Rorug02G0488800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000123
Physical Location & Seq
Reverse (-)
61838500 .. 61840259
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0488800.1

Sequence Viewer

Length: 1461 bp
ATGAAGAAAGCTGCAGAGCTGGTGTTCATCCCCTGCGCCGGTGTTGGCCACATCATATCAACGGTAGAGATCGCAAAGCTTCTCGTATCTCGAGAGGACCACCTCTTCATCACCGTCCTCGTCATGAAGGCCCCCTTCGATTCCAAAGGCAACGATGCCTGTACAGAGTACTGCATCACACAAGCCTCGGATCGCATCAAGTTCATCAATCTCCCACAGCCCGACGTCGACTTCCTAAACATGACCCGCAGCAACTTCCGCAAATCGTTCTTTGAAAGCCACAAACCCTACGTCAGAGATGCCGTCACCAAACTCCTCGCCGGCTCGTCCGAGTCATCAACCCCTGGACTCGCCGGGTTCGTCATCGACATGTTCTGCACCACCATGATCGACGTGGCCAACGAGTTCGGGGTTCCTACCTACATCTTCTTCACCTCCAACGCTGGCTTTCTGGGGCTCGTGTTCCACCTCCAAATGATCCACGACGAGCATGACGTGGTCATCGCCGACTTGAAAGACTCGGATTCTGAGTTGGTCCTCCCGAGTTTTGTTAATCCGGTACCTATCAAAGCCCTGCCGAGTATACTTTTGGAGAAAGAGGAGGCAATCCCATTCTTAAACTACGCAAAAAGGTTCAGAGAGACCAAGGGTATTTTGATAAATACCTTCTCAGATCTGGAACCGCATGCCCTTCGTTCTCTTGATTCTTATGGGAAGATCCCGCAGGTATATCCCGTGGGACCACTTCTAAAAGGGGAGAGTGACGATAATAACCCTAGGGGATCAGATCAGGCCGGCCGGGAGATCTTGAAATGGCTTGATGATCAGCTTCCATCGTCGGTCGTGTTCTTGTGCTTTGGCAGCATGGGAAGTTTTGGTGAGGATCAACTGAAAGAGATTGCCTGCGCGCTGGAGCACAGTGGGCACCGGTTCTTGTGGTCCATACGTTGCCCCCCACCAAAGGGAAAGATTACTCACCCCAGCGACTATGCCGATCCCGCAGCCATCTTGCCCGAGGGGTTTCTCGAACGGACGGCTGGGATTGGGAAGGTCATAGGGTGGGCCCCACAAGTGGCGGTGTTGGCCCACCCGGCCGTGGGAGGTTTTGTATCTCATTGCGGTTGGAATTCGATACTGGAGAGTCTTTGGTTCGGTGTGCCTGTCGCTACGTGGCCAATGTACTCGGAGCAACAAATGAATGCATTTGAGATGGTGAAGGAATTAGAATTGGCGGTGAAGATTAGTGTAGATTACGGGTGGGACTTTTATAACTCCGGTCAGGAGAAGCAAATGGTTTTGAGTGCCCAAGAGATAGAAAGAGGAGTTAGGGAGGTGATGGAGCATGATAGTGCCATAAGGAAGAAGGTGAACGAGATGAGTGAAATGTGCAAGAAAGCATTGATGGATGGTGGTTCTTCCTACTCTTCATTGGGACGTTTTATTGATCAGATATTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04020 ko04071 ko04072 ko04370 ko04371 ko04666 ko05152 map00600 map01100 map04020 map04071 map04072 map04370 map04371 map04666 map05152
Pfam Domains
Protein Families
DUF4283 RVT_1 zf-CCHC_4

Protein Analysis

486

Amino Acids

53.99

Weight (kDa)

5.26

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 279 - 406 3.1e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1269
AatII GACGTC 1 cut(s) 228
Acc36I ACCTGC 1 cut(s) 715
Acc65I GGTACC 1 cut(s) 559
AccB1I GGYRCC 2 cut(s) 559, 924
AccI GTMKAC 2 cut(s) 228, 583
AccII CGCG 1 cut(s) 908
AciI CCGC 8 cut(s) 247, 259, 683, 722, 999, 1076, 1119, 1232
AclWI GGATC 6 cut(s) 198, 472, 712, 790, 891, 989
AcoI YGGCCR 5 cut(s) 46, 396, 796, 1092, 1172
AcsI RAATTY 1 cut(s) 1126
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 4 cut(s) 163, 170, 561, 1181
AfiI CCNNNNNNNGG 6 cut(s) 38, 961, 962, 1072, 1096, 1097
AflIII ACRYGT 1 cut(s) 369
AgeI ACCGGT 1 cut(s) 927
AgsI TTSAA 3 cut(s) 275, 514, 811
AjiI CACGTC 2 cut(s) 394, 496
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 4 cut(s) 11, 19, 79, 829
AluI AGCT 4 cut(s) 11, 19, 79, 829
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 6 cut(s) 198, 472, 712, 790, 891, 989
Ama87I CYCGRG 3 cut(s) 90, 541, 1013
AoxI GGCC 9 cut(s) 46, 129, 396, 792, 796, 1062, 1083, 1092, 1172
ApaI GGGCCC 1 cut(s) 1066
ApeKI GCWGC 4 cut(s) 11, 249, 861, 1001
ApoI RAATTY 1 cut(s) 1126
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AsiGI ACCGGT 1 cut(s) 927
Asp718I GGTACC 1 cut(s) 559
AspA2I CCTAGG 1 cut(s) 776
AspLEI GCGC 3 cut(s) 38, 908, 910
AspS9I GGNCC 8 cut(s) 97, 130, 535, 740, 939, 1062, 1063, 1084
AsuC2I CCSGG 3 cut(s) 355, 800, 1091
AsuHPI GGTGA 9 cut(s) 103, 298, 424, 890, 968, 1225, 1246, 1345, 1378
AvaI CYCGRG 3 cut(s) 90, 541, 1013
AvaII GGWCC 4 cut(s) 97, 535, 740, 939
AvrII CCTAGG 1 cut(s) 776
BaeGI GKGCMC 3 cut(s) 927, 1066, 1306
BalI TGGCCA 3 cut(s) 48, 398, 1174
BanI GGYRCC 2 cut(s) 559, 924
BanII GRGCYC 2 cut(s) 459, 1066
BauI CACGAG 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 3 cut(s) 261, 873, 1013
BccI CCATC 6 cut(s) 841, 1013, 1204, 1330, 1396, 1400
BceAI ACGGC 3 cut(s) 287, 1050, 1079
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 2 cut(s) 823, 1444
BcnI CCSGG 3 cut(s) 355, 800, 1091
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 715
BglI GCCNNNNNGGC 1 cut(s) 1091
BglII AGATCT 2 cut(s) 673, 804
BisI GCNGC 4 cut(s) 12, 250, 862, 1002
BlnI CCTAGG 1 cut(s) 776
BlsI GCNGC 4 cut(s) 13, 251, 863, 1003
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 4 cut(s) 345, 355, 800, 1091
Bme18I GGWCC 4 cut(s) 97, 535, 740, 939
BmeT110I CYCGRG 3 cut(s) 90, 541, 1013
BmgBI CACGTC 2 cut(s) 394, 496
BmgT120I GGNCC 8 cut(s) 97, 130, 535, 740, 939, 1062, 1063, 1084
BmiI GGNNCC 8 cut(s) 132, 414, 561, 681, 741, 926, 1064, 1065
BmrFI CCNGG 4 cut(s) 345, 355, 800, 1091
BmsI GCATC 4 cut(s) 145, 183, 204, 289
BpmI CTGGAG 2 cut(s) 932, 1157
BpuMI CCSGG 3 cut(s) 355, 800, 1091
BsaAI YACGTR 1 cut(s) 1170
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 7 cut(s) 186, 343, 645, 735, 776, 1014, 1095
BsaWI WCCGGW 3 cut(s) 556, 927, 1274
BsaXI ACNNNNNCTCC 2 cut(s) 1092, 1122
Bsc4I CCNNNNNNNGG 6 cut(s) 38, 961, 962, 1072, 1096, 1097
Bse118I RCCGGY 4 cut(s) 38, 320, 794, 927
Bse1I ACTGG 1 cut(s) 1140
Bse3DI GCAATG 1 cut(s) 1114
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 7 cut(s) 186, 343, 645, 735, 776, 1014, 1095
BseGI GGATG 2 cut(s) 27, 1411
BseLI CCNNNNNNNGG 6 cut(s) 38, 961, 962, 1072, 1096, 1097
BseMI GCAATG 1 cut(s) 1114
BseMII CTCAG 2 cut(s) 519, 684
BseNI ACTGG 1 cut(s) 1140
BsePI GCGCGC 1 cut(s) 906
BseRI GAGGAG 3 cut(s) 305, 614, 1335
BseSI GKGCMC 3 cut(s) 927, 1066, 1306
BseX3I CGGCCG 2 cut(s) 796, 1092
BseXI GCAGC 3 cut(s) 261, 873, 1013
BseYI CCCAGC 2 cut(s) 980, 1037
BsgI GTGCAG 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 908
Bsh1285I CGRYCG 3 cut(s) 799, 843, 1095
BshFI GGCC 9 cut(s) 48, 131, 398, 794, 798, 1064, 1085, 1094, 1174
BshNI GGYRCC 2 cut(s) 559, 924
BshTI ACCGGT 1 cut(s) 927
BsiEI CGRYCG 3 cut(s) 799, 843, 1095
BsiHKAI GWGCWC 1 cut(s) 918
BsiHKCI CYCGRG 3 cut(s) 90, 541, 1013
BsiSI CCGG 9 cut(s) 39, 321, 354, 557, 795, 799, 928, 1091, 1275
BslFI GGGAC 3 cut(s) 753, 1274, 1446
BslI CCNNNNNNNGG 6 cut(s) 38, 961, 962, 1072, 1096, 1097
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 3 cut(s) 753, 1274, 1446
BsmI GAATGC 1 cut(s) 1204
BsnI GGCC 9 cut(s) 48, 131, 398, 794, 798, 1064, 1085, 1094, 1174
Bso31I GGTCTC 1 cut(s) 635
BsoBI CYCGRG 3 cut(s) 90, 541, 1013
Bsp120I GGGCCC 1 cut(s) 1062
Bsp1286I GDGCHC 5 cut(s) 459, 918, 927, 1066, 1306
Bsp1407I TGTACA 1 cut(s) 161
BspACI CCGC 8 cut(s) 247, 259, 683, 722, 999, 1076, 1119, 1232
BspANI GGCC 9 cut(s) 48, 131, 398, 794, 798, 1064, 1085, 1094, 1174
BspCNI CTCAG 2 cut(s) 520, 683
BspFNI CGCG 1 cut(s) 908
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 8 cut(s) 132, 414, 561, 681, 741, 926, 1064, 1065
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 6 cut(s) 198, 472, 712, 790, 891, 989
BspT107I GGYRCC 2 cut(s) 559, 924
BspTNI GGTCTC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 1114
BsrFI RCCGGY 4 cut(s) 38, 320, 794, 927
BsrGI TGTACA 1 cut(s) 161
BsrI ACTGG 1 cut(s) 1140
BssAI RCCGGY 4 cut(s) 38, 320, 794, 927
BssECI CCNNGG 7 cut(s) 186, 343, 645, 735, 776, 1014, 1095
BssHII GCGCGC 1 cut(s) 906
BssNAI GTATAC 1 cut(s) 584
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 2 cut(s) 645, 776
Bst1107I GTATAC 1 cut(s) 584
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 64, 115, 920
Bst6I CTCTTC 2 cut(s) 110, 1429
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 1170
BstC8I GCNNGC 6 cut(s) 322, 445, 687, 796, 904, 908
BstDEI CTNAG 2 cut(s) 528, 670
BstDSI CCRYGG 2 cut(s) 735, 1095
BstF5I GGATG 2 cut(s) 27, 1411
BstFNI CGCG 1 cut(s) 908
BstHHI GCGC 3 cut(s) 38, 908, 910
BstMAI GTCTC 1 cut(s) 635
BstMCI CGRYCG 3 cut(s) 799, 843, 1095
BstMWI GCNNNNNNNGC 6 cut(s) 258, 861, 922, 998, 1082, 1091
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 2 cut(s) 373, 689
BstSCI CCNGG 4 cut(s) 343, 353, 798, 1089
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 3 cut(s) 927, 1066, 1306
BstUI CGCG 1 cut(s) 908
BstV1I GCAGC 3 cut(s) 261, 873, 1013
BstX2I RGATCY 3 cut(s) 673, 717, 804
BstYI RGATCY 3 cut(s) 673, 717, 804
BstZ17I GTATAC 1 cut(s) 584
BstZI CGGCCG 2 cut(s) 796, 1092
BsuRI GGCC 9 cut(s) 48, 131, 398, 794, 798, 1064, 1085, 1094, 1174
BtgI CCRYGG 2 cut(s) 735, 1095
BtgZI GCGATG 1 cut(s) 487
BtrI CACGTC 2 cut(s) 394, 496
BtsCI GGATG 2 cut(s) 27, 1411
BtsIMutI CAGTG 1 cut(s) 925
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 6 cut(s) 322, 445, 687, 796, 904, 908
CciI TCATGA 1 cut(s) 123
CfoI GCGC 3 cut(s) 38, 908, 910
Cfr10I RCCGGY 4 cut(s) 38, 320, 794, 927
Cfr13I GGNCC 8 cut(s) 97, 130, 535, 740, 939, 1062, 1063, 1084
Csp6I GTAC 4 cut(s) 162, 169, 560, 1180
CspAI ACCGGT 1 cut(s) 927
CviAII CATG 8 cut(s) 124, 241, 370, 385, 491, 686, 865, 1343
CviQI GTAC 4 cut(s) 162, 169, 560, 1180
DdeI CTNAG 2 cut(s) 528, 670
EaeI YGGCCR 5 cut(s) 46, 396, 796, 1092, 1172
EagI CGGCCG 2 cut(s) 796, 1092
Eam1104I CTCTTC 2 cut(s) 110, 1429
EarI CTCTTC 2 cut(s) 110, 1429
EclXI CGGCCG 2 cut(s) 796, 1092
Eco130I CCWWGG 2 cut(s) 645, 776
Eco24I GRGCYC 2 cut(s) 459, 1066
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 4 cut(s) 97, 535, 740, 939
Eco52I CGGCCG 2 cut(s) 796, 1092
Eco88I CYCGRG 3 cut(s) 90, 541, 1013
EcoO109I RGGNCCY 2 cut(s) 130, 1063
EcoRI GAATTC 1 cut(s) 1126
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 645, 776
EcoT22I ATGCAT 1 cut(s) 1204
EcoT38I GRGCYC 2 cut(s) 459, 1066
ErhI CCWWGG 2 cut(s) 645, 776
FaeI CATG 8 cut(s) 127, 244, 373, 388, 494, 689, 868, 1346
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 3 cut(s) 753, 1274, 1446
FatI CATG 8 cut(s) 123, 240, 369, 384, 490, 685, 864, 1342
FauI CCCGC 3 cut(s) 254, 729, 1006
FbaI TGATCA 2 cut(s) 823, 1444
FblI GTMKAC 2 cut(s) 228, 583
Fnu4HI GCNGC 4 cut(s) 12, 250, 862, 1002
FokI GGATG 2 cut(s) 14, 1418
FriOI GRGCYC 2 cut(s) 459, 1066
FseI GGCCGGCC 1 cut(s) 798
Fsp4HI GCNGC 4 cut(s) 12, 250, 862, 1002
FspBI CTAG 1 cut(s) 777
GlaI GCGC 3 cut(s) 37, 907, 909
GluI GCNGC 4 cut(s) 12, 250, 862, 1002
GsaI CCCAGC 2 cut(s) 984, 1041
GsuI CTGGAG 2 cut(s) 932, 1157
HaeIII GGCC 9 cut(s) 48, 131, 398, 794, 798, 1064, 1085, 1094, 1174
HapII CCGG 9 cut(s) 39, 321, 354, 557, 795, 799, 928, 1091, 1275
HhaI GCGC 3 cut(s) 38, 908, 910
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 8 cut(s) 127, 244, 373, 388, 494, 689, 868, 1346
Hin6I GCGC 3 cut(s) 36, 906, 908
HinP1I GCGC 3 cut(s) 36, 906, 908
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 7 cut(s) 140, 332, 348, 518, 524, 704, 1141
HpaII CCGG 9 cut(s) 39, 321, 354, 557, 795, 799, 928, 1091, 1275
HphI GGTGA 9 cut(s) 103, 298, 424, 890, 968, 1225, 1246, 1345, 1378
Hpy166II GTNNAC 3 cut(s) 229, 584, 1369
Hpy188III TCNNGA 9 cut(s) 90, 92, 124, 541, 677, 701, 808, 1025, 1280
Hpy8I GTNNAC 3 cut(s) 229, 584, 1369
Hpy99I CGWCG 5 cut(s) 227, 230, 395, 488, 841
HpyAV CCTTC 7 cut(s) 121, 145, 676, 701, 1042, 1210, 1357
HpyCH4III ACNGT 3 cut(s) 64, 115, 920
HpyCH4IV ACGT 7 cut(s) 225, 291, 393, 495, 946, 1169, 1435
HpyCH4V TGCA 5 cut(s) 14, 174, 378, 1202, 1389
HpyF10VI GCNNNNNNNGC 6 cut(s) 258, 861, 922, 998, 1082, 1091
HpyF3I CTNAG 2 cut(s) 528, 670
HpySE526I ACGT 7 cut(s) 225, 291, 393, 495, 946, 1169, 1435
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 8 cut(s) 127, 244, 373, 388, 494, 689, 868, 1346
HspAI GCGC 3 cut(s) 36, 906, 908
KpnI GGTACC 1 cut(s) 563
KroI GCCGGC 2 cut(s) 320, 794
KroNI GCCGGC 2 cut(s) 322, 796
Ksp22I TGATCA 2 cut(s) 823, 1444
LmnI GCTCC 3 cut(s) 913, 1186, 1339
Lsp1109I GCAGC 3 cut(s) 261, 873, 1013
LweI GCATC 4 cut(s) 145, 183, 204, 289
MaeI CTAG 1 cut(s) 777
MaeII ACGT 7 cut(s) 225, 291, 393, 495, 946, 1169, 1435
MaeIII GTNAC 2 cut(s) 304, 761
MboII GAAGA 9 cut(s) 16, 97, 418, 421, 727, 1249, 1372, 1407, 1416
MflI RGATCY 3 cut(s) 673, 717, 804
MhlI GDGCHC 5 cut(s) 459, 918, 927, 1066, 1306
MlsI TGGCCA 3 cut(s) 48, 398, 1174
MluCI AATT 3 cut(s) 1126, 1220, 1226
MluNI TGGCCA 3 cut(s) 48, 398, 1174
MlyI GAGTC 4 cut(s) 341, 342, 512, 1150
MmeI TCCRAC 2 cut(s) 462, 1103
Mox20I TGGCCA 3 cut(s) 48, 398, 1174
Mph1103I ATGCAT 1 cut(s) 1204
MroNI GCCGGC 2 cut(s) 320, 794
MscI TGGCCA 3 cut(s) 48, 398, 1174
MseI TTAA 2 cut(s) 552, 617
MslI CAYNNNNRTG 3 cut(s) 368, 383, 1347
Msp20I TGGCCA 3 cut(s) 48, 398, 1174
MspI CCGG 9 cut(s) 39, 321, 354, 557, 795, 799, 928, 1091, 1275
MspR9I CCNGG 4 cut(s) 345, 355, 800, 1091
Mva1269I GAATGC 1 cut(s) 1204
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 908
MwoI GCNNNNNNNGC 6 cut(s) 258, 861, 922, 998, 1082, 1091
NaeI GCCGGC 2 cut(s) 322, 796
NciI CCSGG 3 cut(s) 355, 800, 1091
NgoMIV GCCGGC 2 cut(s) 320, 794
NlaIII CATG 8 cut(s) 127, 244, 373, 388, 494, 689, 868, 1346
NlaIV GGNNCC 8 cut(s) 132, 414, 561, 681, 741, 926, 1064, 1065
NmeAIII GCCGAG 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 304, 761
NsiI ATGCAT 1 cut(s) 1204
NspI RCATGY 2 cut(s) 373, 689
PaeI GCATGC 1 cut(s) 689
PaeR7I CTCGAG 1 cut(s) 90
PagI TCATGA 1 cut(s) 123
PauI GCGCGC 1 cut(s) 906
PciI ACATGT 1 cut(s) 369
PcsI WCGNNNNNNNCGW 3 cut(s) 357, 399, 492
PctI GAATGC 1 cut(s) 1204
PdiI GCCGGC 2 cut(s) 322, 796
PfeI GAWTC 3 cut(s) 140, 524, 704
PflFI GACNNNGTC 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 927
PkrI GCNGC 4 cut(s) 13, 251, 863, 1003
PleI GAGTC 4 cut(s) 340, 342, 512, 1149
PpsI GAGTC 4 cut(s) 340, 342, 512, 1149
Ppu21I YACGTR 1 cut(s) 1170
PscI ACATGT 1 cut(s) 369
PsiI TTATAA 1 cut(s) 1269
Psp6I CCWGG 1 cut(s) 343
PspFI CCCAGC 2 cut(s) 980, 1037
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 8 cut(s) 132, 414, 561, 681, 741, 926, 1064, 1065
PspOMI GGGCCC 1 cut(s) 1062
PspPI GGNCC 8 cut(s) 97, 130, 535, 740, 939, 1062, 1063, 1084
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 3 cut(s) 673, 717, 804
PsyI GACNNNGTC 1 cut(s) 497
PteI GCGCGC 1 cut(s) 906
RigI GGCCGGCC 1 cut(s) 798
RsaI GTAC 4 cut(s) 163, 170, 561, 1181
RsaNI GTAC 4 cut(s) 162, 169, 560, 1180
RseI CAYNNNNRTG 3 cut(s) 368, 383, 1347
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 552, 617
SatI GCNGC 4 cut(s) 12, 250, 862, 1002
Sau96I GGNCC 8 cut(s) 97, 130, 535, 740, 939, 1062, 1063, 1084
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 4 cut(s) 341, 342, 512, 1150
ScrFI CCNGG 4 cut(s) 345, 355, 800, 1091
SduI GDGCHC 5 cut(s) 459, 918, 927, 1066, 1306
SfaNI GCATC 4 cut(s) 145, 183, 204, 289
SfcI CTRYAG 1 cut(s) 12
SfiI GGCCNNNNNGGCC 1 cut(s) 1091
Sfr274I CTCGAG 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 38
SinI GGWCC 4 cut(s) 97, 535, 740, 939
SlaI CTCGAG 1 cut(s) 90
SmiMI CAYNNNNRTG 3 cut(s) 368, 383, 1347
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
SphI GCATGC 1 cut(s) 689
Sse9I AATT 3 cut(s) 1126, 1220, 1226
SsiI CCGC 8 cut(s) 247, 259, 683, 722, 999, 1076, 1119, 1232
SspMI CTAG 1 cut(s) 777
StyD4I CCNGG 4 cut(s) 343, 353, 798, 1089
StyI CCWWGG 2 cut(s) 645, 776
TaaI ACNGT 3 cut(s) 64, 115, 920
TaiI ACGT 7 cut(s) 228, 294, 396, 498, 949, 1172, 1438
TaqI TCGA 7 cut(s) 91, 138, 228, 366, 390, 1026, 1130
TaqII GACCGA 1 cut(s) 829
TasI AATT 3 cut(s) 1126, 1220, 1226
TatI WGTACW 3 cut(s) 161, 168, 1179
TfiI GAWTC 3 cut(s) 140, 524, 704
Tru1I TTAA 2 cut(s) 552, 617
Tru9I TTAA 2 cut(s) 552, 617
TscAI CASTG 1 cut(s) 925
TseFI GTSAC 2 cut(s) 304, 761
TseI GCWGC 4 cut(s) 11, 249, 861, 1001
Tsp45I GTSAC 2 cut(s) 304, 761
TspDTI ATGAA 7 cut(s) 16, 17, 97, 140, 193, 1211, 1416
TspGWI ACGGA 1 cut(s) 1045
TspRI CASTG 1 cut(s) 925
Tth111I GACNNNGTC 1 cut(s) 497
VpaK11BI GGWCC 4 cut(s) 97, 535, 740, 939
XapI RAATTY 1 cut(s) 1126
XceI RCATGY 2 cut(s) 373, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 90
XmaJI CCTAGG 1 cut(s) 776
XmiI GTMKAC 2 cut(s) 228, 583
XspI CTAG 1 cut(s) 777
ZraI GACGTC 1 cut(s) 226
ZrmI AGTACT 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.