ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 200 |
| AccB1I | GGYRCC | 1 cut(s) | 319 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 150 |
| AciI | CCGC | 3 cut(s) | 110, 134, 323 |
| AclWI | GGATC | 2 cut(s) | 112, 169 |
| AcyI | GRCGYC | 1 cut(s) | 320 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 150, 214, 247, 337 |
| AflIII | ACRYGT | 1 cut(s) | 363 |
| AgsI | TTSAA | 1 cut(s) | 214 |
| AlwI | GGATC | 2 cut(s) | 112, 169 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApeKI | GCWGC | 1 cut(s) | 325 |
| AspLEI | GCGC | 1 cut(s) | 322 |
| AspS9I | GGNCC | 2 cut(s) | 238, 251 |
| AsuHPI | GGTGA | 2 cut(s) | 127, 238 |
| AvaII | GGWCC | 2 cut(s) | 238, 251 |
| BanI | GGYRCC | 1 cut(s) | 319 |
| BbsI | GAAGAC | 1 cut(s) | 196 |
| BbvCI | CCTCAGC | 1 cut(s) | 246 |
| BbvI | GCAGC | 1 cut(s) | 312 |
| BfoI | RGCGCY | 1 cut(s) | 323 |
| BisI | GCNGC | 3 cut(s) | 135, 323, 326 |
| BlsI | GCNGC | 3 cut(s) | 136, 324, 327 |
| Bme18I | GGWCC | 2 cut(s) | 238, 251 |
| BmgT120I | GGNCC | 2 cut(s) | 238, 251 |
| BmiI | GGNNCC | 4 cut(s) | 6, 239, 252, 321 |
| BoxI | GACNNNNGTC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 196 |
| Bpu10I | CCTNAGC | 1 cut(s) | 246 |
| BpuEI | CTTGAG | 1 cut(s) | 356 |
| BsaAI | YACGTR | 1 cut(s) | 364 |
| BsaHI | GRCGYC | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 1 cut(s) | 254 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 254, 284 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 150, 214, 247, 337 |
| BseDI | CCNNGG | 1 cut(s) | 254 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 150, 214, 247, 337 |
| BseMII | CTCAG | 2 cut(s) | 144, 237 |
| BseRI | GAGGAG | 2 cut(s) | 38, 63 |
| BseXI | GCAGC | 1 cut(s) | 312 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BshNI | GGYRCC | 1 cut(s) | 319 |
| BsiSI | CCGG | 1 cut(s) | 178 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 150, 214, 247, 337 |
| BsmI | GAATGC | 1 cut(s) | 61 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bsp143I | GATC | 3 cut(s) | 117, 174, 307 |
| Bsp19I | CCATGG | 1 cut(s) | 254 |
| BspACI | CCGC | 3 cut(s) | 110, 134, 323 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspCNI | CTCAG | 2 cut(s) | 143, 238 |
| BspLI | GGNNCC | 4 cut(s) | 6, 239, 252, 321 |
| BspPI | GGATC | 2 cut(s) | 112, 169 |
| BspT107I | GGYRCC | 1 cut(s) | 319 |
| BssECI | CCNNGG | 1 cut(s) | 254 |
| BssMI | GATC | 3 cut(s) | 117, 174, 307 |
| BssNI | GRCGYC | 1 cut(s) | 320 |
| BssT1I | CCWWGG | 1 cut(s) | 254 |
| BstACI | GRCGYC | 1 cut(s) | 320 |
| BstBAI | YACGTR | 1 cut(s) | 364 |
| BstC8I | GCNNGC | 1 cut(s) | 285 |
| BstDEI | CTNAG | 3 cut(s) | 102, 130, 246 |
| BstDSI | CCRYGG | 1 cut(s) | 254 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 245, 335 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstH2I | RGCGCY | 1 cut(s) | 323 |
| BstHHI | GCGC | 1 cut(s) | 322 |
| BstKTI | GATC | 3 cut(s) | 120, 177, 310 |
| BstMBI | GATC | 3 cut(s) | 117, 174, 307 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 97 |
| BstV1I | GCAGC | 1 cut(s) | 312 |
| BstV2I | GAAGAC | 1 cut(s) | 196 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtgI | CCRYGG | 1 cut(s) | 254 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| BtsI | GCAGTG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 1 cut(s) | 357 |
| Cac8I | GCNNGC | 1 cut(s) | 285 |
| CfoI | GCGC | 1 cut(s) | 322 |
| Cfr13I | GGNCC | 2 cut(s) | 238, 251 |
| CviAII | CATG | 4 cut(s) | 41, 65, 255, 274 |
| CviJI | RGCY | 6 cut(s) | 5, 29, 39, 259, 287, 388 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 29, 39, 259, 287, 388 |
| DdeI | CTNAG | 3 cut(s) | 102, 130, 246 |
| DinI | GGCGCC | 1 cut(s) | 321 |
| DpnI | GATC | 3 cut(s) | 119, 176, 309 |
| DpnII | GATC | 3 cut(s) | 117, 174, 307 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 200 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 200 |
| Eco130I | CCWWGG | 1 cut(s) | 254 |
| Eco47I | GGWCC | 2 cut(s) | 238, 251 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 245, 335 |
| EcoO109I | RGGNCCY | 1 cut(s) | 238 |
| EcoT14I | CCWWGG | 1 cut(s) | 254 |
| EcoT22I | ATGCAT | 1 cut(s) | 377 |
| EgeI | GGCGCC | 1 cut(s) | 321 |
| EheI | GGCGCC | 1 cut(s) | 321 |
| ErhI | CCWWGG | 1 cut(s) | 254 |
| FaeI | CATG | 4 cut(s) | 44, 68, 258, 277 |
| FaiI | YATR | 8 cut(s) | 42, 66, 85, 256, 275, 294, 373, 377 |
| FatI | CATG | 4 cut(s) | 40, 64, 254, 273 |
| Fnu4HI | GCNGC | 3 cut(s) | 135, 323, 326 |
| FokI | GGATG | 1 cut(s) | 203 |
| Fsp4HI | GCNGC | 3 cut(s) | 135, 323, 326 |
| GlaI | GCGC | 1 cut(s) | 321 |
| GluI | GCNGC | 3 cut(s) | 135, 323, 326 |
| HaeII | RGCGCY | 1 cut(s) | 323 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HapII | CCGG | 1 cut(s) | 178 |
| HhaI | GCGC | 1 cut(s) | 322 |
| Hin1I | GRCGYC | 1 cut(s) | 320 |
| Hin1II | CATG | 4 cut(s) | 44, 68, 258, 277 |
| Hin6I | GCGC | 1 cut(s) | 320 |
| HinP1I | GCGC | 1 cut(s) | 320 |
| HinfI | GANTC | 2 cut(s) | 68, 168 |
| HpaII | CCGG | 1 cut(s) | 178 |
| HphI | GGTGA | 2 cut(s) | 127, 238 |
| Hpy166II | GTNNAC | 1 cut(s) | 361 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 307 |
| Hpy188III | TCNNGA | 2 cut(s) | 172, 311 |
| Hpy8I | GTNNAC | 1 cut(s) | 361 |
| Hpy99I | CGWCG | 1 cut(s) | 127 |
| HpyAV | CCTTC | 1 cut(s) | 100 |
| HpyCH4IV | ACGT | 1 cut(s) | 363 |
| HpyCH4V | TGCA | 2 cut(s) | 328, 375 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 130, 246 |
| HpySE526I | ACGT | 1 cut(s) | 363 |
| Hsp92I | GRCGYC | 1 cut(s) | 320 |
| Hsp92II | CATG | 4 cut(s) | 44, 68, 258, 277 |
| HspAI | GCGC | 1 cut(s) | 320 |
| KasI | GGCGCC | 1 cut(s) | 319 |
| Kzo9I | GATC | 3 cut(s) | 117, 174, 307 |
| LmnI | GCTCC | 2 cut(s) | 10, 163 |
| LpnPI | CCDG | 2 cut(s) | 191, 269 |
| Lsp1109I | GCAGC | 1 cut(s) | 312 |
| MaeII | ACGT | 1 cut(s) | 363 |
| MaeIII | GTNAC | 1 cut(s) | 276 |
| MalI | GATC | 3 cut(s) | 119, 176, 309 |
| MboI | GATC | 3 cut(s) | 117, 174, 307 |
| MboII | GAAGA | 3 cut(s) | 67, 196, 241 |
| MluCI | AATT | 2 cut(s) | 209, 232 |
| Mly113I | GGCGCC | 1 cut(s) | 320 |
| MlyI | GAGTC | 1 cut(s) | 177 |
| Mph1103I | ATGCAT | 1 cut(s) | 377 |
| MseI | TTAA | 1 cut(s) | 391 |
| MspA1I | CMGCKG | 2 cut(s) | 134, 325 |
| MspI | CCGG | 1 cut(s) | 178 |
| Mva1269I | GAATGC | 1 cut(s) | 61 |
| NarI | GGCGCC | 1 cut(s) | 320 |
| NcoI | CCATGG | 1 cut(s) | 254 |
| NdeII | GATC | 3 cut(s) | 117, 174, 307 |
| NlaIII | CATG | 4 cut(s) | 44, 68, 258, 277 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 239, 252, 321 |
| NsiI | ATGCAT | 1 cut(s) | 377 |
| PctI | GAATGC | 1 cut(s) | 61 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 150 |
| PkrI | GCNGC | 3 cut(s) | 136, 324, 327 |
| PleI | GAGTC | 1 cut(s) | 176 |
| PluTI | GGCGCC | 1 cut(s) | 323 |
| PpsI | GAGTC | 1 cut(s) | 176 |
| Ppu21I | YACGTR | 1 cut(s) | 364 |
| PpuMI | RGGWCCY | 1 cut(s) | 238 |
| PshAI | GACNNNNGTC | 1 cut(s) | 97 |
| Psp5II | RGGWCCY | 1 cut(s) | 238 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 239, 252, 321 |
| PspPI | GGNCC | 2 cut(s) | 238, 251 |
| PspPPI | RGGWCCY | 1 cut(s) | 238 |
| SaqAI | TTAA | 1 cut(s) | 391 |
| SatI | GCNGC | 3 cut(s) | 135, 323, 326 |
| Sau3AI | GATC | 3 cut(s) | 117, 174, 307 |
| Sau96I | GGNCC | 2 cut(s) | 238, 251 |
| SchI | GAGTC | 1 cut(s) | 177 |
| SetI | ASST | 5 cut(s) | 84, 228, 333, 342, 366 |
| SfoI | GGCGCC | 1 cut(s) | 321 |
| SinI | GGWCC | 2 cut(s) | 238, 251 |
| SmlI | CTYRAG | 1 cut(s) | 335 |
| SmoI | CTYRAG | 1 cut(s) | 335 |
| Sse9I | AATT | 2 cut(s) | 209, 232 |
| SsiI | CCGC | 3 cut(s) | 110, 134, 323 |
| SspDI | GGCGCC | 1 cut(s) | 319 |
| StyI | CCWWGG | 1 cut(s) | 254 |
| TaiI | ACGT | 1 cut(s) | 366 |
| TasI | AATT | 2 cut(s) | 209, 232 |
| TauI | GCSGC | 2 cut(s) | 137, 325 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| Tru1I | TTAA | 1 cut(s) | 391 |
| Tru9I | TTAA | 1 cut(s) | 391 |
| TscAI | CASTG | 1 cut(s) | 357 |
| TseI | GCWGC | 1 cut(s) | 325 |
| TspRI | CASTG | 1 cut(s) | 357 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 150 |
| VpaK11BI | GGWCC | 2 cut(s) | 238, 251 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 245, 335 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 280 |
| Zsp2I | ATGCAT | 1 cut(s) | 377 |