FvH4_3g35981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000123
Physical Location & Seq
Forward (+)
30869160 .. 30869947
788 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35981.t1

Sequence Viewer

Length: 567 bp
ATGAGAGAAAAAGAATTGTCAAAACATTTCATGAGTTTGGTCTGTGGGTTGCCGGTGGTTGATGCAGTGGGTGGCGGGGTCGACGACGTTCCCGAGCTCTTGGCGAGTCGGTCGCGGGAAGTTGTTGGGTTGGTAGAGGAGTCGGAATTGCAGGCGGAGGAGCCGGTGGGACTAGAGGTCGAATTGGAAGGCAGCGAGGTGGTGGCTGCTCTGACTGTCGCGAGGGGGGGGTCTCATGGGCTCTCGGTGGTTGGGCCAGGAAACTCTGGGCTGAAAAGGAAAATTGAGACTAGGGCTGAGCTTGCTTTTTCTGATGTTATTGGGCCGTCTGGATCTATTTTGGGGAAAAGGCATAAGCCTAATCTCCAATGTGGGGAGTTGGTAGAGGTTCTGGTGTTGTTTGGGAAGGTTCCAAAGAAAAGATCTCCAAAGAAGAGAGGTCGTCCGAGAGGTATTGGATCCATGGCTCCTAGCTCGGTAAGTGCTGAGGATATAGACCTCGAGTCCGAGGCTGAGGAAGATCAAGCTCGTGGGGCAGTGGGGAAGATCCCTATCACATTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

19.8

Weight (kDa)

5.38

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AccII CGCG 2 cut(s) 115, 221
AciI CCGC 3 cut(s) 75, 115, 155
AclWI GGATC 4 cut(s) 340, 453, 466, 541
AfiI CCNNNNNNNGG 1 cut(s) 373
AhdI GACNNNNNGTC 2 cut(s) 176, 502
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 4 cut(s) 97, 301, 474, 527
AluI AGCT 4 cut(s) 97, 301, 474, 527
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 237, 281
AlwI GGATC 4 cut(s) 340, 453, 466, 541
Ama87I CYCGRG 2 cut(s) 92, 500
AoxI GGCC 2 cut(s) 254, 323
ApeKI GCWGC 2 cut(s) 192, 206
AspS9I GGNCC 2 cut(s) 254, 323
AvaI CYCGRG 2 cut(s) 92, 500
BamHI GGATCC 1 cut(s) 458
BanII GRGCYC 2 cut(s) 99, 243
BauI CACGAG 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 99
BbvCI CCTCAGC 2 cut(s) 486, 513
BbvI GCAGC 2 cut(s) 193, 204
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 237, 281
BfaI CTAG 3 cut(s) 173, 291, 471
BglII AGATCT 1 cut(s) 422
BisI GCNGC 2 cut(s) 193, 207
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 2 cut(s) 194, 208
Bme1390I CCNGG 1 cut(s) 258
BmeRI GACNNNNNGTC 2 cut(s) 176, 502
BmeT110I CYCGRG 2 cut(s) 92, 500
BmgT120I GGNCC 2 cut(s) 254, 323
BmiI GGNNCC 4 cut(s) 162, 411, 460, 468
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 52
Bpu10I CCTNAGC 2 cut(s) 486, 513
Bpu1102I GCTNAGC 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 462, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 2 cut(s) 52, 163
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 462, 507
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 3 cut(s) 288, 477, 504
BseRI GAGGAG 2 cut(s) 152, 173
BseXI GCAGC 2 cut(s) 193, 204
Bsh1236I CGCG 2 cut(s) 115, 221
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 256, 325
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 92, 500
BsiSI CCGG 2 cut(s) 53, 164
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 237, 281
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 256, 325
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 2 cut(s) 92, 500
Bsp1286I GDGCHC 2 cut(s) 99, 243
Bsp143I GATC 5 cut(s) 332, 422, 458, 520, 546
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 462
Bsp68I TCGCGA 1 cut(s) 221
BspACI CCGC 3 cut(s) 75, 115, 155
BspANI GGCC 2 cut(s) 256, 325
BspCNI CTCAG 3 cut(s) 289, 478, 505
BspFNI CGCG 2 cut(s) 115, 221
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 4 cut(s) 162, 411, 460, 468
BspPI GGATC 4 cut(s) 340, 453, 466, 541
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 2 cut(s) 52, 163
BssAI RCCGGY 2 cut(s) 52, 163
BssECI CCNNGG 2 cut(s) 462, 507
BssMI GATC 5 cut(s) 332, 422, 458, 520, 546
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 153, 303
BstDEI CTNAG 3 cut(s) 297, 486, 513
BstDSI CCRYGG 1 cut(s) 462
BstFNI CGCG 2 cut(s) 115, 221
BstKTI GATC 5 cut(s) 335, 425, 461, 523, 549
BstMAI GTCTC 2 cut(s) 237, 281
BstMBI GATC 5 cut(s) 332, 422, 458, 520, 546
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 302, 533
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstUI CGCG 2 cut(s) 115, 221
BstV1I GCAGC 2 cut(s) 193, 204
BstX2I RGATCY 4 cut(s) 332, 422, 458, 546
BstYI RGATCY 4 cut(s) 332, 422, 458, 546
BsuRI GGCC 2 cut(s) 256, 325
BtgI CCRYGG 1 cut(s) 462
BtsI GCAGTG 2 cut(s) 72, 543
BtsIMutI CAGTG 2 cut(s) 72, 543
BtuMI TCGCGA 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 153, 303
CciI TCATGA 1 cut(s) 30
Cfr10I RCCGGY 2 cut(s) 52, 163
Cfr13I GGNCC 2 cut(s) 254, 323
CviAII CATG 3 cut(s) 31, 236, 463
DdeI CTNAG 3 cut(s) 297, 486, 513
DpnI GATC 5 cut(s) 334, 424, 460, 522, 548
DpnII GATC 5 cut(s) 332, 422, 458, 520, 546
DriI GACNNNNNGTC 2 cut(s) 176, 502
Eam1104I CTCTTC 1 cut(s) 428
Eam1105I GACNNNNNGTC 2 cut(s) 176, 502
EarI CTCTTC 1 cut(s) 428
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 2 cut(s) 99, 243
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 2 cut(s) 92, 500
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 2 cut(s) 99, 243
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 3 cut(s) 34, 239, 466
FaiI YATR 5 cut(s) 32, 237, 354, 464, 494
FaqI GGGAC 1 cut(s) 183
FatI CATG 3 cut(s) 30, 235, 462
FauI CCCGC 2 cut(s) 68, 108
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 193, 207
FriOI GRGCYC 2 cut(s) 99, 243
Fsp4HI GCNGC 2 cut(s) 193, 207
FspBI CTAG 3 cut(s) 173, 291, 471
GluI GCNGC 2 cut(s) 193, 207
HaeIII GGCC 2 cut(s) 256, 325
HapII CCGG 2 cut(s) 53, 164
Hin1II CATG 3 cut(s) 34, 239, 466
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 3 cut(s) 106, 140, 503
HpaII CCGG 2 cut(s) 53, 164
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 145, 213, 313, 447, 508
Hpy188III TCNNGA 4 cut(s) 31, 92, 220, 330
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 2 cut(s) 86, 89
HpyAV CCTTC 2 cut(s) 182, 400
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 65, 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 533
HpyF3I CTNAG 3 cut(s) 297, 486, 513
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 3 cut(s) 34, 239, 466
Kzo9I GATC 5 cut(s) 332, 422, 458, 520, 546
LmnI GCTCC 2 cut(s) 160, 472
LpnPI CCDG 8 cut(s) 66, 137, 177, 243, 252, 270, 315, 377
Lsp1109I GCAGC 2 cut(s) 193, 204
LweI GCATC 1 cut(s) 52
MaeI CTAG 3 cut(s) 173, 291, 471
MaeII ACGT 1 cut(s) 87
MalI GATC 5 cut(s) 334, 424, 460, 522, 548
MboI GATC 5 cut(s) 332, 422, 458, 520, 546
MboII GAAGA 3 cut(s) 445, 530, 556
MflI RGATCY 4 cut(s) 332, 422, 458, 546
MhlI GDGCHC 2 cut(s) 99, 243
MluCI AATT 4 cut(s) 14, 146, 182, 282
MlyI GAGTC 3 cut(s) 115, 149, 512
MmeI TCCRAC 1 cut(s) 123
MspI CCGG 2 cut(s) 53, 164
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 2 cut(s) 115, 221
MwoI GCNNNNNNNGC 2 cut(s) 302, 533
NcoI CCATGG 1 cut(s) 462
NdeII GATC 5 cut(s) 332, 422, 458, 520, 546
NlaIII CATG 3 cut(s) 34, 239, 466
NlaIV GGNNCC 4 cut(s) 162, 411, 460, 468
NruI TCGCGA 1 cut(s) 221
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 2 cut(s) 194, 208
PleI GAGTC 3 cut(s) 114, 148, 511
PpsI GAGTC 3 cut(s) 114, 148, 511
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 4 cut(s) 162, 411, 460, 468
PspPI GGNCC 2 cut(s) 254, 323
PspXI VCTCGAGB 1 cut(s) 500
PsuI RGATCY 4 cut(s) 332, 422, 458, 546
RruI TCGCGA 1 cut(s) 221
SacI GAGCTC 1 cut(s) 99
SalI GTCGAC 1 cut(s) 80
SatI GCNGC 2 cut(s) 193, 207
Sau3AI GATC 5 cut(s) 332, 422, 458, 520, 546
Sau96I GGNCC 2 cut(s) 254, 323
SchI GAGTC 3 cut(s) 115, 149, 512
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 2 cut(s) 99, 243
SfaNI GCATC 1 cut(s) 52
Sfr274I CTCGAG 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 4 cut(s) 14, 146, 182, 282
SsiI CCGC 3 cut(s) 75, 115, 155
SspMI CTAG 3 cut(s) 173, 291, 471
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 81, 180, 501
TaqII GACCGA 1 cut(s) 99
TasI AATT 4 cut(s) 14, 146, 182, 282
TscAI CASTG 2 cut(s) 72, 543
TseI GCWGC 2 cut(s) 192, 206
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 2 cut(s) 72, 543
XhoI CTCGAG 1 cut(s) 500
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 3 cut(s) 173, 291, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.