Rmu_sc0004191.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004191.1
OG0000123
Physical Location & Seq
Forward (+)
36163 .. 36621
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004191.1_g000011.1.cds

Sequence Viewer

Length: 459 bp
atggcggcggtggctccgtcagtactatttgaagaggccgtggtgagcctgcttggtggagaggatgctatccatgattcttttttctatctctgtggccgacttctgtctaagaaggcggtggtgctttcatcgttttcggtggcgatctccaatgtttggggattgaaggagagggttttgatccggcaggaggaggaggacatctttgtcttccaatttaaggagatggaggtgaagaatcgggttctcttggggggtccttggttctataacaactccatgctattgctggcagattacgacggagtttctgacctagaagcggcgctgctgcatctccttgaggtgtgggtggctgtgaaagggttgcagatagcgatgcagaatgagaaagccctaaccctaatcggacgagcactgggggactttgttcgagttgatcagggggcggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

152

Amino Acids

16.83

Weight (kDa)

4.78

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 5 cut(s) 5, 8, 119, 326, 452
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 4 cut(s) 159, 193, 223, 325
AgsI TTSAA 2 cut(s) 32, 169
Alw21I GWGCWC 1 cut(s) 421
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 36, 97
ApeKI GCWGC 2 cut(s) 331, 334
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 55, 247
AvaII GGWCC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 318, 321
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 23
BclI TGATCA 1 cut(s) 442
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 4 cut(s) 6, 327, 332, 335
BlsI GCNGC 4 cut(s) 7, 328, 333, 336
BmcAI AGTACT 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 15, 261
BmrI ACTGGG 1 cut(s) 431
BmsI GCATC 3 cut(s) 55, 346, 372
BmuI ACTGGG 1 cut(s) 431
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 39, 263
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 193, 223, 325
Bse1I ACTGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 39, 263
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 4 cut(s) 159, 193, 223, 325
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 209, 212
BseXI GCAGC 2 cut(s) 318, 321
BshFI GGCC 2 cut(s) 38, 99
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 4 cut(s) 159, 193, 223, 325
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 2 cut(s) 38, 99
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 3 cut(s) 147, 183, 442
BspACI CCGC 5 cut(s) 5, 8, 119, 326, 452
BspANI GGCC 2 cut(s) 38, 99
BspLI GGNNCC 2 cut(s) 15, 261
BspPI GGATC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 39, 263
BssMI GATC 3 cut(s) 147, 183, 442
BssT1I CCWWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 50, 294
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 3 cut(s) 150, 186, 445
BstMBI GATC 3 cut(s) 147, 183, 442
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 318, 321
BstV2I GAAGAC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 38, 99
BtgI CCRYGG 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 50, 294
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 23
CviAII CATG 2 cut(s) 74, 283
CviJI RGCY 6 cut(s) 14, 38, 48, 99, 359, 398
CviKI_1 RGCY 6 cut(s) 14, 38, 48, 99, 359, 398
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 111
DpnI GATC 3 cut(s) 149, 185, 444
DpnII GATC 3 cut(s) 147, 183, 442
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 2 cut(s) 77, 286
FaiI YATR 3 cut(s) 75, 273, 284
FaqI GGGAC 1 cut(s) 440
FatI CATG 2 cut(s) 73, 282
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 6, 327, 332, 335
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 4 cut(s) 6, 327, 332, 335
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 330
GluI GCNGC 4 cut(s) 6, 327, 332, 335
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 2 cut(s) 38, 99
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 331
Hin1II CATG 2 cut(s) 77, 286
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 2 cut(s) 77, 241
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 55, 247
Hpy188I TCNGA 2 cut(s) 316, 413
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 109, 163
HpyCH4V TGCA 3 cut(s) 337, 373, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 2 cut(s) 77, 286
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 147, 183, 442
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 62, 176, 200, 278, 407, 431
Lsp1109I GCAGC 2 cut(s) 318, 321
LweI GCATC 3 cut(s) 55, 346, 372
MaeI CTAG 1 cut(s) 320
MalI GATC 3 cut(s) 149, 185, 444
MboI GATC 3 cut(s) 147, 183, 442
MboII GAAGA 3 cut(s) 44, 205, 250
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 218
MnlI CCTC 8 cut(s) 28, 55, 168, 187, 190, 193, 226, 340
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 147, 183, 442
NlaIII CATG 2 cut(s) 77, 286
NlaIV GGNNCC 2 cut(s) 15, 261
PfeI GAWTC 2 cut(s) 77, 241
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 4 cut(s) 7, 328, 333, 336
PpuMI RGGWCCY 1 cut(s) 260
PshAI GACNNNNGTC 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 15, 261
PspPI GGNCC 1 cut(s) 260
PspPPI RGGWCCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 4 cut(s) 6, 327, 332, 335
Sau3AI GATC 3 cut(s) 147, 183, 442
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 24
SduI GDGCHC 1 cut(s) 421
SetI ASST 3 cut(s) 237, 321, 351
SfaNI GCATC 3 cut(s) 55, 346, 372
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 218
SsiI CCGC 5 cut(s) 5, 8, 119, 326, 452
SspMI CTAG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 263
TaqI TCGA 1 cut(s) 436
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 22
TauI GCSGC 2 cut(s) 8, 329
TfiI GAWTC 2 cut(s) 77, 241
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 426
TseI GCWGC 2 cut(s) 331, 334
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 2 cut(s) 6, 321
TspRI CASTG 1 cut(s) 426
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.