Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 98 |
| AciI | CCGC | 6 cut(s) | 5, 204, 269, 305, 491, 514 |
| AclWI | GGATC | 4 cut(s) | 124, 158, 421, 434 |
| AcuI | CTGAAG | 1 cut(s) | 134 |
| AcyI | GRCGYC | 1 cut(s) | 23 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 105, 139, 169, 322 |
| AflIII | ACRYGT | 1 cut(s) | 363 |
| AgsI | TTSAA | 1 cut(s) | 169 |
| AleI | CACNNNNGTG | 1 cut(s) | 377 |
| AluBI | AGCT | 1 cut(s) | 505 |
| AluI | AGCT | 1 cut(s) | 505 |
| Alw26I | GTCTC | 1 cut(s) | 30 |
| AlwI | GGATC | 4 cut(s) | 124, 158, 421, 434 |
| Aor13HI | TCCGGA | 1 cut(s) | 98 |
| AoxI | GGCC | 3 cut(s) | 45, 205, 313 |
| AspLEI | GCGC | 1 cut(s) | 450 |
| AspS9I | GGNCC | 3 cut(s) | 206, 313, 436 |
| AsuC2I | CCSGG | 1 cut(s) | 352 |
| AsuHPI | GGTGA | 2 cut(s) | 319, 340 |
| AvaII | GGWCC | 1 cut(s) | 436 |
| BamHI | GGATCC | 1 cut(s) | 426 |
| BanII | GRGCYC | 1 cut(s) | 265 |
| BccI | CCATC | 1 cut(s) | 85 |
| BceAI | ACGGC | 2 cut(s) | 32, 36 |
| BclI | TGATCA | 1 cut(s) | 388 |
| BcnI | CCSGG | 1 cut(s) | 352 |
| BcoDI | GTCTC | 1 cut(s) | 30 |
| BisI | GCNGC | 2 cut(s) | 6, 205 |
| BlsI | GCNGC | 2 cut(s) | 7, 206 |
| Bme1390I | CCNGG | 1 cut(s) | 352 |
| Bme18I | GGWCC | 1 cut(s) | 436 |
| BmgT120I | GGNCC | 3 cut(s) | 206, 313, 436 |
| BmiI | GGNNCC | 2 cut(s) | 276, 428 |
| BmrFI | CCNGG | 1 cut(s) | 352 |
| BmsI | GCATC | 1 cut(s) | 219 |
| BpmI | CTGGAG | 2 cut(s) | 311, 527 |
| BpuMI | CCSGG | 1 cut(s) | 352 |
| BsaHI | GRCGYC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 209 |
| BsaWI | WCCGGW | 1 cut(s) | 98 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 105, 139, 169, 322 |
| Bse118I | RCCGGY | 1 cut(s) | 487 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| BseAI | TCCGGA | 1 cut(s) | 98 |
| BseDI | CCNNGG | 1 cut(s) | 209 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 105, 139, 169, 322 |
| BseMII | CTCAG | 2 cut(s) | 308, 434 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 2 cut(s) | 56, 155 |
| BsgI | GTGCAG | 1 cut(s) | 359 |
| BshFI | GGCC | 3 cut(s) | 47, 207, 315 |
| BsiSI | CCGG | 3 cut(s) | 99, 352, 488 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 105, 139, 169, 322 |
| BsmAI | GTCTC | 1 cut(s) | 30 |
| BsmBI | CGTCTC | 1 cut(s) | 30 |
| BsnI | GGCC | 3 cut(s) | 47, 207, 315 |
| Bsp1286I | GDGCHC | 1 cut(s) | 265 |
| Bsp13I | TCCGGA | 1 cut(s) | 98 |
| Bsp143I | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| Bsp19I | CCATGG | 1 cut(s) | 209 |
| BspACI | CCGC | 6 cut(s) | 5, 204, 269, 305, 491, 514 |
| BspANI | GGCC | 3 cut(s) | 47, 207, 315 |
| BspCNI | CTCAG | 2 cut(s) | 309, 433 |
| BspEI | TCCGGA | 1 cut(s) | 98 |
| BspLI | GGNNCC | 2 cut(s) | 276, 428 |
| BspPI | GGATC | 4 cut(s) | 124, 158, 421, 434 |
| BsrFI | RCCGGY | 1 cut(s) | 487 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssAI | RCCGGY | 1 cut(s) | 487 |
| BssECI | CCNNGG | 1 cut(s) | 209 |
| BssMI | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| BssNI | GRCGYC | 1 cut(s) | 23 |
| BssT1I | CCWWGG | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 1 cut(s) | 254 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstACI | GRCGYC | 1 cut(s) | 23 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 1 cut(s) | 489 |
| BstDEI | CTNAG | 2 cut(s) | 317, 420 |
| BstDSI | CCRYGG | 1 cut(s) | 209 |
| BstHHI | GCGC | 1 cut(s) | 450 |
| BstKTI | GATC | 5 cut(s) | 132, 153, 391, 429, 477 |
| BstMAI | GTCTC | 1 cut(s) | 30 |
| BstMBI | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 29, 337 |
| BstNSI | RCATGY | 1 cut(s) | 367 |
| BstSCI | CCNGG | 1 cut(s) | 350 |
| BstX2I | RGATCY | 2 cut(s) | 150, 426 |
| BstYI | RGATCY | 2 cut(s) | 150, 426 |
| BsuRI | GGCC | 3 cut(s) | 47, 207, 315 |
| BtgI | CCRYGG | 1 cut(s) | 209 |
| BtgZI | GCGATG | 1 cut(s) | 107 |
| Cac8I | GCNNGC | 1 cut(s) | 489 |
| CfoI | GCGC | 1 cut(s) | 450 |
| Cfr10I | RCCGGY | 1 cut(s) | 487 |
| Cfr13I | GGNCC | 3 cut(s) | 206, 313, 436 |
| CseI | GACGC | 1 cut(s) | 12 |
| CviAII | CATG | 6 cut(s) | 134, 200, 210, 364, 392, 440 |
| DdeI | CTNAG | 2 cut(s) | 317, 420 |
| DpnI | GATC | 5 cut(s) | 131, 152, 390, 428, 476 |
| DpnII | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| EciI | GGCGGA | 1 cut(s) | 284 |
| Eco130I | CCWWGG | 1 cut(s) | 209 |
| Eco24I | GRGCYC | 1 cut(s) | 265 |
| Eco47I | GGWCC | 1 cut(s) | 436 |
| Eco57I | CTGAAG | 1 cut(s) | 134 |
| EcoO109I | RGGNCCY | 1 cut(s) | 313 |
| EcoT14I | CCWWGG | 1 cut(s) | 209 |
| EcoT38I | GRGCYC | 1 cut(s) | 265 |
| ErhI | CCWWGG | 1 cut(s) | 209 |
| Esp3I | CGTCTC | 1 cut(s) | 30 |
| FaeI | CATG | 6 cut(s) | 137, 203, 213, 367, 395, 443 |
| FatI | CATG | 6 cut(s) | 133, 199, 209, 363, 391, 439 |
| FbaI | TGATCA | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 205 |
| FriOI | GRGCYC | 1 cut(s) | 265 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 205 |
| GlaI | GCGC | 1 cut(s) | 449 |
| GluI | GCNGC | 2 cut(s) | 6, 205 |
| GsuI | CTGGAG | 2 cut(s) | 311, 527 |
| HaeIII | GGCC | 3 cut(s) | 47, 207, 315 |
| HapII | CCGG | 3 cut(s) | 99, 352, 488 |
| HgaI | GACGC | 1 cut(s) | 12 |
| HhaI | GCGC | 1 cut(s) | 450 |
| Hin1I | GRCGYC | 1 cut(s) | 23 |
| Hin1II | CATG | 6 cut(s) | 137, 203, 213, 367, 395, 443 |
| Hin6I | GCGC | 1 cut(s) | 448 |
| HinP1I | GCGC | 1 cut(s) | 448 |
| HinfI | GANTC | 1 cut(s) | 343 |
| HpaII | CCGG | 3 cut(s) | 99, 352, 488 |
| HphI | GGTGA | 2 cut(s) | 319, 340 |
| Hpy166II | GTNNAC | 1 cut(s) | 55 |
| Hpy188I | TCNGA | 3 cut(s) | 40, 129, 423 |
| Hpy188III | TCNNGA | 2 cut(s) | 99, 290 |
| Hpy8I | GTNNAC | 1 cut(s) | 55 |
| Hpy99I | CGWCG | 1 cut(s) | 22 |
| HpyAV | CCTTC | 4 cut(s) | 109, 304, 376, 403 |
| HpyCH4III | ACNGT | 1 cut(s) | 254 |
| HpyCH4V | TGCA | 3 cut(s) | 283, 340, 403 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 29, 337 |
| HpyF3I | CTNAG | 2 cut(s) | 317, 420 |
| Hsp92I | GRCGYC | 1 cut(s) | 23 |
| Hsp92II | CATG | 6 cut(s) | 137, 203, 213, 367, 395, 443 |
| HspAI | GCGC | 1 cut(s) | 448 |
| Kpn2I | TCCGGA | 1 cut(s) | 98 |
| KroI | GCCGGC | 1 cut(s) | 487 |
| KroNI | GCCGGC | 1 cut(s) | 489 |
| Ksp22I | TGATCA | 1 cut(s) | 388 |
| Kzo9I | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| LmnI | GCTCC | 2 cut(s) | 172, 280 |
| LweI | GCATC | 1 cut(s) | 219 |
| MalI | GATC | 5 cut(s) | 131, 152, 390, 428, 476 |
| MboI | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| MboII | GAAGA | 3 cut(s) | 145, 149, 188 |
| MflI | RGATCY | 2 cut(s) | 150, 426 |
| MhlI | GDGCHC | 1 cut(s) | 265 |
| MluCI | AATT | 2 cut(s) | 164, 223 |
| MlyI | GAGTC | 1 cut(s) | 337 |
| MmeI | TCCRAC | 2 cut(s) | 18, 348 |
| MreI | CGCCGGCG | 1 cut(s) | 487 |
| MroI | TCCGGA | 1 cut(s) | 98 |
| MroNI | GCCGGC | 1 cut(s) | 487 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspI | CCGG | 3 cut(s) | 99, 352, 488 |
| MspR9I | CCNGG | 1 cut(s) | 352 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 29, 337 |
| NaeI | GCCGGC | 1 cut(s) | 489 |
| NciI | CCSGG | 1 cut(s) | 352 |
| NcoI | CCATGG | 1 cut(s) | 209 |
| NdeII | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| NgoMIV | GCCGGC | 1 cut(s) | 487 |
| NlaIII | CATG | 6 cut(s) | 137, 203, 213, 367, 395, 443 |
| NlaIV | GGNNCC | 2 cut(s) | 276, 428 |
| NspI | RCATGY | 1 cut(s) | 367 |
| OliI | CACNNNNGTG | 1 cut(s) | 377 |
| PciI | ACATGT | 1 cut(s) | 363 |
| PdiI | GCCGGC | 1 cut(s) | 489 |
| PflFI | GACNNNGTC | 1 cut(s) | 22 |
| PkrI | GCNGC | 2 cut(s) | 7, 206 |
| PleI | GAGTC | 1 cut(s) | 337 |
| PpsI | GAGTC | 1 cut(s) | 337 |
| PscI | ACATGT | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 2 cut(s) | 276, 428 |
| PspPI | GGNCC | 3 cut(s) | 206, 313, 436 |
| PsuI | RGATCY | 2 cut(s) | 150, 426 |
| PsyI | GACNNNGTC | 1 cut(s) | 22 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SatI | GCNGC | 2 cut(s) | 6, 205 |
| Sau3AI | GATC | 5 cut(s) | 129, 150, 388, 426, 474 |
| Sau96I | GGNCC | 3 cut(s) | 206, 313, 436 |
| SchI | GAGTC | 1 cut(s) | 337 |
| ScrFI | CCNGG | 1 cut(s) | 352 |
| SduI | GDGCHC | 1 cut(s) | 265 |
| SetI | ASST | 4 cut(s) | 60, 147, 297, 507 |
| SfaNI | GCATC | 1 cut(s) | 219 |
| SgrAI | CRCCGGYG | 1 cut(s) | 487 |
| SinI | GGWCC | 1 cut(s) | 436 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| Sse9I | AATT | 2 cut(s) | 164, 223 |
| SsiI | CCGC | 6 cut(s) | 5, 204, 269, 305, 491, 514 |
| StyD4I | CCNGG | 1 cut(s) | 350 |
| StyI | CCWWGG | 1 cut(s) | 209 |
| TaaI | ACNGT | 1 cut(s) | 254 |
| TaqI | TCGA | 1 cut(s) | 227 |
| TasI | AATT | 2 cut(s) | 164, 223 |
| TauI | GCSGC | 2 cut(s) | 8, 207 |
| TspDTI | ATGAA | 2 cut(s) | 150, 188 |
| TspGWI | ACGGA | 1 cut(s) | 419 |
| Tth111I | GACNNNGTC | 1 cut(s) | 22 |
| VpaK11BI | GGWCC | 1 cut(s) | 436 |
| XceI | RCATGY | 1 cut(s) | 367 |