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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 120 |
| Acc16I | TGCGCA | 1 cut(s) | 803 |
| AccB1I | GGYRCC | 1 cut(s) | 125 |
| AciI | CCGC | 1 cut(s) | 771 |
| AclWI | GGATC | 1 cut(s) | 443 |
| AcsI | RAATTY | 1 cut(s) | 539 |
| AcuI | CTGAAG | 1 cut(s) | 455 |
| AfaI | GTAC | 1 cut(s) | 784 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 271, 670 |
| AgsI | TTSAA | 7 cut(s) | 148, 163, 172, 182, 530, 655, 938 |
| AjiI | CACGTC | 1 cut(s) | 901 |
| AluBI | AGCT | 5 cut(s) | 10, 94, 409, 469, 493 |
| AluI | AGCT | 5 cut(s) | 10, 94, 409, 469, 493 |
| Alw26I | GTCTC | 1 cut(s) | 56 |
| AlwI | GGATC | 1 cut(s) | 443 |
| AoxI | GGCC | 2 cut(s) | 331, 885 |
| ApeKI | GCWGC | 2 cut(s) | 493, 787 |
| ApoI | RAATTY | 1 cut(s) | 539 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 190 |
| AspLEI | GCGC | 1 cut(s) | 804 |
| AspS9I | GGNCC | 3 cut(s) | 331, 503, 885 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BanI | GGYRCC | 1 cut(s) | 125 |
| BbsI | GAAGAC | 1 cut(s) | 621 |
| BbvI | GCAGC | 2 cut(s) | 480, 774 |
| BccI | CCATC | 2 cut(s) | 544, 692 |
| BceAI | ACGGC | 1 cut(s) | 505 |
| BclI | TGATCA | 1 cut(s) | 825 |
| BcoDI | GTCTC | 1 cut(s) | 56 |
| BfaI | CTAG | 2 cut(s) | 95, 278 |
| BfmI | CTRYAG | 1 cut(s) | 815 |
| BisI | GCNGC | 2 cut(s) | 494, 788 |
| BlsI | GCNGC | 2 cut(s) | 495, 789 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmgBI | CACGTC | 1 cut(s) | 901 |
| BmgT120I | GGNCC | 3 cut(s) | 331, 503, 885 |
| BmiI | GGNNCC | 2 cut(s) | 127, 504 |
| BmsI | GCATC | 2 cut(s) | 34, 211 |
| BpiI | GAAGAC | 1 cut(s) | 621 |
| BpmI | CTGGAG | 1 cut(s) | 647 |
| BpuEI | CTTGAG | 1 cut(s) | 485 |
| BsaAI | YACGTR | 1 cut(s) | 449 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 271, 670 |
| Bse1I | ACTGG | 2 cut(s) | 81, 664 |
| Bse3DI | GCAATG | 1 cut(s) | 195 |
| BseGI | GGATG | 3 cut(s) | 555, 611, 703 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 271, 670 |
| BseMI | GCAATG | 1 cut(s) | 195 |
| BseMII | CTCAG | 1 cut(s) | 862 |
| BseNI | ACTGG | 2 cut(s) | 81, 664 |
| BseRI | GAGGAG | 4 cut(s) | 607, 610, 613, 893 |
| BseXI | GCAGC | 2 cut(s) | 480, 774 |
| Bsh1285I | CGRYCG | 1 cut(s) | 928 |
| BshFI | GGCC | 2 cut(s) | 333, 887 |
| BshNI | GGYRCC | 1 cut(s) | 125 |
| BsiEI | CGRYCG | 1 cut(s) | 928 |
| BslFI | GGGAC | 4 cut(s) | 154, 340, 411, 887 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 271, 670 |
| BsmAI | GTCTC | 1 cut(s) | 56 |
| BsmBI | CGTCTC | 1 cut(s) | 56 |
| BsmFI | GGGAC | 4 cut(s) | 154, 340, 411, 887 |
| BsmI | GAATGC | 1 cut(s) | 393 |
| BsnI | GGCC | 2 cut(s) | 333, 887 |
| Bsp143I | GATC | 2 cut(s) | 435, 825 |
| BspACI | CCGC | 1 cut(s) | 771 |
| BspANI | GGCC | 2 cut(s) | 333, 887 |
| BspCNI | CTCAG | 1 cut(s) | 861 |
| BspLI | GGNNCC | 2 cut(s) | 127, 504 |
| BspPI | GGATC | 1 cut(s) | 443 |
| BspT107I | GGYRCC | 1 cut(s) | 125 |
| BsrDI | GCAATG | 1 cut(s) | 195 |
| BsrI | ACTGG | 2 cut(s) | 81, 664 |
| BssMI | GATC | 2 cut(s) | 435, 825 |
| Bst4CI | ACNGT | 2 cut(s) | 404, 693 |
| BstBAI | YACGTR | 1 cut(s) | 449 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstDEI | CTNAG | 2 cut(s) | 205, 848 |
| BstF5I | GGATG | 3 cut(s) | 555, 611, 703 |
| BstHHI | GCGC | 1 cut(s) | 804 |
| BstKTI | GATC | 2 cut(s) | 438, 828 |
| BstMAI | GTCTC | 1 cut(s) | 56 |
| BstMBI | GATC | 2 cut(s) | 435, 825 |
| BstMCI | CGRYCG | 1 cut(s) | 928 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 406 |
| BstNSI | RCATGY | 2 cut(s) | 246, 303 |
| BstSFI | CTRYAG | 1 cut(s) | 815 |
| BstSNI | TACGTA | 1 cut(s) | 449 |
| BstV1I | GCAGC | 2 cut(s) | 480, 774 |
| BstV2I | GAAGAC | 1 cut(s) | 621 |
| BstX2I | RGATCY | 1 cut(s) | 435 |
| BstYI | RGATCY | 1 cut(s) | 435 |
| BsuRI | GGCC | 2 cut(s) | 333, 887 |
| BtrI | CACGTC | 1 cut(s) | 901 |
| BtsCI | GGATG | 3 cut(s) | 555, 611, 703 |
| BtsIMutI | CAGTG | 2 cut(s) | 400, 698 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| CfoI | GCGC | 1 cut(s) | 804 |
| Cfr13I | GGNCC | 3 cut(s) | 331, 503, 885 |
| Csp6I | GTAC | 1 cut(s) | 783 |
| CviAII | CATG | 3 cut(s) | 243, 300, 371 |
| CviJI | RGCY | 9 cut(s) | 10, 94, 333, 409, 413, 469, 493, 660, 887 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 94, 333, 409, 413, 469, 493, 660, 887 |
| CviQI | GTAC | 1 cut(s) | 783 |
| DdeI | CTNAG | 2 cut(s) | 205, 848 |
| DpnI | GATC | 2 cut(s) | 437, 827 |
| DpnII | GATC | 2 cut(s) | 435, 825 |
| Eco105I | TACGTA | 1 cut(s) | 449 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| Eco57I | CTGAAG | 1 cut(s) | 455 |
| Esp3I | CGTCTC | 1 cut(s) | 56 |
| FaeI | CATG | 3 cut(s) | 246, 303, 374 |
| FaiI | YATR | 8 cut(s) | 33, 120, 244, 289, 301, 372, 677, 734 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FaqI | GGGAC | 4 cut(s) | 154, 340, 411, 887 |
| FatI | CATG | 3 cut(s) | 242, 299, 370 |
| FauI | CCCGC | 1 cut(s) | 764 |
| FbaI | TGATCA | 1 cut(s) | 825 |
| Fnu4HI | GCNGC | 2 cut(s) | 494, 788 |
| FokI | GGATG | 3 cut(s) | 562, 598, 710 |
| Fsp4HI | GCNGC | 2 cut(s) | 494, 788 |
| FspBI | CTAG | 2 cut(s) | 95, 278 |
| FspI | TGCGCA | 1 cut(s) | 803 |
| GlaI | GCGC | 1 cut(s) | 803 |
| GluI | GCNGC | 2 cut(s) | 494, 788 |
| GsuI | CTGGAG | 1 cut(s) | 647 |
| HaeIII | GGCC | 2 cut(s) | 333, 887 |
| HhaI | GCGC | 1 cut(s) | 804 |
| Hin1II | CATG | 3 cut(s) | 246, 303, 374 |
| Hin6I | GCGC | 1 cut(s) | 802 |
| HinP1I | GCGC | 1 cut(s) | 802 |
| HincII | GTYRAC | 2 cut(s) | 78, 843 |
| HindII | GTYRAC | 2 cut(s) | 78, 843 |
| HinfI | GANTC | 4 cut(s) | 41, 209, 530, 858 |
| HpaI | GTTAAC | 1 cut(s) | 78 |
| Hpy166II | GTNNAC | 2 cut(s) | 78, 843 |
| Hpy188I | TCNGA | 5 cut(s) | 456, 474, 720, 851, 914 |
| Hpy188III | TCNNGA | 2 cut(s) | 272, 464 |
| Hpy8I | GTNNAC | 2 cut(s) | 78, 843 |
| Hpy99I | CGWCG | 1 cut(s) | 526 |
| HpyAV | CCTTC | 6 cut(s) | 56, 131, 176, 275, 317, 924 |
| HpyCH4III | ACNGT | 2 cut(s) | 404, 693 |
| HpyCH4IV | ACGT | 3 cut(s) | 448, 757, 900 |
| HpyCH4V | TGCA | 5 cut(s) | 88, 154, 200, 364, 679 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 406 |
| HpyF3I | CTNAG | 2 cut(s) | 205, 848 |
| HpySE526I | ACGT | 3 cut(s) | 448, 757, 900 |
| Hsp92II | CATG | 3 cut(s) | 246, 303, 374 |
| HspAI | GCGC | 1 cut(s) | 802 |
| Ksp22I | TGATCA | 1 cut(s) | 825 |
| KspAI | GTTAAC | 1 cut(s) | 78 |
| Kzo9I | GATC | 2 cut(s) | 435, 825 |
| LpnPI | CCDG | 7 cut(s) | 94, 257, 395, 532, 677, 812, 918 |
| Lsp1109I | GCAGC | 2 cut(s) | 480, 774 |
| LweI | GCATC | 2 cut(s) | 34, 211 |
| MaeI | CTAG | 2 cut(s) | 95, 278 |
| MaeII | ACGT | 3 cut(s) | 448, 757, 900 |
| MalI | GATC | 2 cut(s) | 437, 827 |
| MboI | GATC | 2 cut(s) | 435, 825 |
| MboII | GAAGA | 3 cut(s) | 230, 332, 621 |
| MfeI | CAATTG | 1 cut(s) | 430 |
| MflI | RGATCY | 1 cut(s) | 435 |
| MluCI | AATT | 7 cut(s) | 430, 484, 539, 588, 602, 650, 938 |
| MlyI | GAGTC | 1 cut(s) | 218 |
| MroXI | GAANNNNTTC | 1 cut(s) | 190 |
| MseI | TTAA | 3 cut(s) | 20, 77, 537 |
| MslI | CAYNNNNRTG | 3 cut(s) | 30, 111, 833 |
| MspA1I | CMGCKG | 1 cut(s) | 409 |
| MunI | CAATTG | 1 cut(s) | 430 |
| Mva1269I | GAATGC | 1 cut(s) | 393 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 406 |
| NdeII | GATC | 2 cut(s) | 435, 825 |
| NlaIII | CATG | 3 cut(s) | 246, 303, 374 |
| NlaIV | GGNNCC | 2 cut(s) | 127, 504 |
| NsbI | TGCGCA | 1 cut(s) | 803 |
| NspI | RCATGY | 2 cut(s) | 246, 303 |
| PctI | GAATGC | 1 cut(s) | 393 |
| PdmI | GAANNNNTTC | 1 cut(s) | 190 |
| PfeI | GAWTC | 3 cut(s) | 41, 530, 858 |
| PkrI | GCNGC | 2 cut(s) | 495, 789 |
| PleI | GAGTC | 1 cut(s) | 217 |
| PpsI | GAGTC | 1 cut(s) | 217 |
| Ppu21I | YACGTR | 1 cut(s) | 449 |
| PsiI | TTATAA | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 2 cut(s) | 127, 504 |
| PspPI | GGNCC | 3 cut(s) | 331, 503, 885 |
| PsuI | RGATCY | 1 cut(s) | 435 |
| PvuII | CAGCTG | 1 cut(s) | 409 |
| RsaI | GTAC | 1 cut(s) | 784 |
| RsaNI | GTAC | 1 cut(s) | 783 |
| RseI | CAYNNNNRTG | 3 cut(s) | 30, 111, 833 |
| SaqAI | TTAA | 3 cut(s) | 20, 77, 537 |
| SatI | GCNGC | 2 cut(s) | 494, 788 |
| Sau3AI | GATC | 2 cut(s) | 435, 825 |
| Sau96I | GGNCC | 3 cut(s) | 331, 503, 885 |
| SchI | GAGTC | 1 cut(s) | 218 |
| SfaNI | GCATC | 2 cut(s) | 34, 211 |
| SfcI | CTRYAG | 1 cut(s) | 815 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 30, 111, 833 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| SnaBI | TACGTA | 1 cut(s) | 449 |
| Sse9I | AATT | 7 cut(s) | 430, 484, 539, 588, 602, 650, 938 |
| SsiI | CCGC | 1 cut(s) | 771 |
| SspI | AATATT | 1 cut(s) | 727 |
| SspMI | CTAG | 2 cut(s) | 95, 278 |
| TaaI | ACNGT | 2 cut(s) | 404, 693 |
| TaiI | ACGT | 3 cut(s) | 451, 760, 903 |
| TaqI | TCGA | 1 cut(s) | 669 |
| TaqII | GACCGA | 1 cut(s) | 942 |
| TasI | AATT | 7 cut(s) | 430, 484, 539, 588, 602, 650, 938 |
| TfiI | GAWTC | 3 cut(s) | 41, 530, 858 |
| Tru1I | TTAA | 3 cut(s) | 20, 77, 537 |
| Tru9I | TTAA | 3 cut(s) | 20, 77, 537 |
| TscAI | CASTG | 2 cut(s) | 407, 698 |
| TseI | GCWGC | 2 cut(s) | 493, 787 |
| TspDTI | ATGAA | 4 cut(s) | 95, 150, 257, 609 |
| TspGWI | ACGGA | 1 cut(s) | 470 |
| TspRI | CASTG | 2 cut(s) | 407, 698 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XapI | RAATTY | 1 cut(s) | 539 |
| XceI | RCATGY | 2 cut(s) | 246, 303 |
| XmnI | GAANNNNTTC | 1 cut(s) | 190 |
| XspI | CTAG | 2 cut(s) | 95, 278 |