ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF7950 | PF25821 | 139 - 265 | 5.2e-49 | Domain of unknown function (DUF7950) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 3 cut(s) | 289, 307, 367 |
| AciI | CCGC | 9 cut(s) | 15, 135, 202, 220, 236, 400, 656, 756, 769 |
| AclWI | GGATC | 3 cut(s) | 145, 708, 721 |
| AcoI | YGGCCR | 2 cut(s) | 332, 401 |
| AcvI | CACGTG | 3 cut(s) | 330, 519, 708 |
| AcyI | GRCGYC | 1 cut(s) | 644 |
| AfaI | GTAC | 3 cut(s) | 425, 575, 704 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 119, 453, 511 |
| AflIII | ACRYGT | 5 cut(s) | 516, 518, 705, 707, 735 |
| AgeI | ACCGGT | 1 cut(s) | 362 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 621 |
| AjiI | CACGTC | 2 cut(s) | 736, 778 |
| AjnI | CCWGG | 1 cut(s) | 504 |
| AluBI | AGCT | 4 cut(s) | 70, 321, 339, 785 |
| AluI | AGCT | 4 cut(s) | 70, 321, 339, 785 |
| Alw26I | GTCTC | 5 cut(s) | 133, 189, 503, 596, 632 |
| AlwI | GGATC | 3 cut(s) | 145, 708, 721 |
| Ama87I | CYCGRG | 1 cut(s) | 353 |
| Aor13HI | TCCGGA | 3 cut(s) | 289, 307, 367 |
| AoxI | GGCC | 4 cut(s) | 332, 401, 660, 799 |
| ApeKI | GCWGC | 2 cut(s) | 724, 785 |
| AsiGI | ACCGGT | 1 cut(s) | 362 |
| AspLEI | GCGC | 1 cut(s) | 790 |
| AspS9I | GGNCC | 2 cut(s) | 365, 799 |
| AsuC2I | CCSGG | 5 cut(s) | 354, 355, 525, 569, 674 |
| AsuHPI | GGTGA | 6 cut(s) | 394, 418, 436, 625, 643, 662 |
| AvaI | CYCGRG | 1 cut(s) | 353 |
| AvaII | GGWCC | 1 cut(s) | 365 |
| AxyI | CCTNAGG | 1 cut(s) | 297 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 441, 474 |
| BamHI | GGATCC | 1 cut(s) | 713 |
| BbrPI | CACGTG | 3 cut(s) | 330, 519, 708 |
| BbvI | GCAGC | 2 cut(s) | 711, 772 |
| BccI | CCATC | 2 cut(s) | 646, 725 |
| BceAI | ACGGC | 2 cut(s) | 657, 803 |
| BciT130I | CCWGG | 1 cut(s) | 506 |
| BcnI | CCSGG | 5 cut(s) | 354, 355, 525, 569, 674 |
| BcoDI | GTCTC | 5 cut(s) | 133, 189, 503, 596, 632 |
| BfmI | CTRYAG | 1 cut(s) | 163 |
| BisI | GCNGC | 3 cut(s) | 401, 725, 786 |
| BlpI | GCTNAGC | 1 cut(s) | 322 |
| BlsI | GCNGC | 3 cut(s) | 402, 726, 787 |
| Bme1390I | CCNGG | 6 cut(s) | 354, 355, 506, 525, 569, 674 |
| Bme18I | GGWCC | 1 cut(s) | 365 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 621 |
| BmeT110I | CYCGRG | 1 cut(s) | 353 |
| BmgBI | CACGTC | 2 cut(s) | 736, 778 |
| BmgT120I | GGNCC | 2 cut(s) | 365, 799 |
| BmiI | GGNNCC | 2 cut(s) | 294, 715 |
| BmrFI | CCNGG | 6 cut(s) | 354, 355, 506, 525, 569, 674 |
| BmrI | ACTGGG | 1 cut(s) | 482 |
| BmuI | ACTGGG | 1 cut(s) | 482 |
| BoxI | GACNNNNGTC | 1 cut(s) | 519 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 305, 337 |
| BpmI | CTGGAG | 1 cut(s) | 527 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 322 |
| BpuMI | CCSGG | 5 cut(s) | 354, 355, 525, 569, 674 |
| BsaAI | YACGTR | 6 cut(s) | 330, 427, 453, 519, 684, 708 |
| BsaHI | GRCGYC | 1 cut(s) | 644 |
| BsaJI | CCNNGG | 3 cut(s) | 352, 353, 524 |
| BsaWI | WCCGGW | 4 cut(s) | 289, 307, 362, 367 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 31, 111, 141, 629, 659 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 119, 453, 511 |
| Bse118I | RCCGGY | 5 cut(s) | 112, 362, 391, 403, 801 |
| Bse1I | ACTGG | 1 cut(s) | 477 |
| Bse21I | CCTNAGG | 1 cut(s) | 297 |
| BseAI | TCCGGA | 3 cut(s) | 289, 307, 367 |
| BseBI | CCWGG | 1 cut(s) | 506 |
| BseDI | CCNNGG | 3 cut(s) | 352, 353, 524 |
| BseGI | GGATG | 2 cut(s) | 504, 613 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 119, 453, 511 |
| BseMII | CTCAG | 2 cut(s) | 77, 336 |
| BseNI | ACTGG | 1 cut(s) | 477 |
| BseRI | GAGGAG | 2 cut(s) | 503, 508 |
| BseX3I | CGGCCG | 1 cut(s) | 401 |
| BseXI | GCAGC | 2 cut(s) | 711, 772 |
| BsgI | GTGCAG | 2 cut(s) | 706, 719 |
| Bsh1285I | CGRYCG | 1 cut(s) | 404 |
| BshFI | GGCC | 4 cut(s) | 334, 403, 662, 801 |
| BshTI | ACCGGT | 1 cut(s) | 362 |
| BsiEI | CGRYCG | 1 cut(s) | 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 353 |
| BsiWI | CGTACG | 1 cut(s) | 423 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 119, 453, 511 |
| BsmAI | GTCTC | 5 cut(s) | 133, 189, 503, 596, 632 |
| BsmBI | CGTCTC | 3 cut(s) | 503, 596, 632 |
| BsnI | GGCC | 4 cut(s) | 334, 403, 662, 801 |
| BsoBI | CYCGRG | 1 cut(s) | 353 |
| Bsp13I | TCCGGA | 3 cut(s) | 289, 307, 367 |
| Bsp143I | GATC | 3 cut(s) | 137, 179, 713 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 322 |
| BspACI | CCGC | 9 cut(s) | 15, 135, 202, 220, 236, 400, 656, 756, 769 |
| BspANI | GGCC | 4 cut(s) | 334, 403, 662, 801 |
| BspCNI | CTCAG | 2 cut(s) | 78, 335 |
| BspEI | TCCGGA | 3 cut(s) | 289, 307, 367 |
| BspLI | GGNNCC | 2 cut(s) | 294, 715 |
| BspPI | GGATC | 3 cut(s) | 145, 708, 721 |
| BspQI | GCTCTTC | 1 cut(s) | 306 |
| BsrFI | RCCGGY | 5 cut(s) | 112, 362, 391, 403, 801 |
| BsrI | ACTGG | 1 cut(s) | 477 |
| BssAI | RCCGGY | 5 cut(s) | 112, 362, 391, 403, 801 |
| BssECI | CCNNGG | 3 cut(s) | 352, 353, 524 |
| BssMI | GATC | 3 cut(s) | 137, 179, 713 |
| BssNI | GRCGYC | 1 cut(s) | 644 |
| Bst2UI | CCWGG | 1 cut(s) | 506 |
| Bst4CI | ACNGT | 4 cut(s) | 164, 433, 542, 619 |
| Bst6I | CTCTTC | 1 cut(s) | 306 |
| BstACI | GRCGYC | 1 cut(s) | 644 |
| BstBAI | YACGTR | 6 cut(s) | 330, 427, 453, 519, 684, 708 |
| BstC8I | GCNNGC | 1 cut(s) | 393 |
| BstDEI | CTNAG | 3 cut(s) | 86, 297, 322 |
| BstF5I | GGATG | 2 cut(s) | 504, 613 |
| BstHHI | GCGC | 1 cut(s) | 790 |
| BstKTI | GATC | 3 cut(s) | 140, 182, 716 |
| BstMAI | GTCTC | 5 cut(s) | 133, 189, 503, 596, 632 |
| BstMBI | GATC | 3 cut(s) | 137, 179, 713 |
| BstMCI | CGRYCG | 1 cut(s) | 404 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 397, 674, 807 |
| BstNI | CCWGG | 1 cut(s) | 506 |
| BstNSI | RCATGY | 1 cut(s) | 391 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 519 |
| BstSCI | CCNGG | 6 cut(s) | 352, 353, 504, 523, 567, 672 |
| BstSFI | CTRYAG | 1 cut(s) | 163 |
| BstV1I | GCAGC | 2 cut(s) | 711, 772 |
| BstX2I | RGATCY | 2 cut(s) | 137, 713 |
| BstYI | RGATCY | 2 cut(s) | 137, 713 |
| BstZI | CGGCCG | 1 cut(s) | 401 |
| Bsu36I | CCTNAGG | 1 cut(s) | 297 |
| BsuRI | GGCC | 4 cut(s) | 334, 403, 662, 801 |
| BtrI | CACGTC | 2 cut(s) | 736, 778 |
| BtsCI | GGATG | 2 cut(s) | 504, 613 |
| Cac8I | GCNNGC | 1 cut(s) | 393 |
| CfoI | GCGC | 1 cut(s) | 790 |
| Cfr10I | RCCGGY | 5 cut(s) | 112, 362, 391, 403, 801 |
| Cfr13I | GGNCC | 2 cut(s) | 365, 799 |
| Cfr9I | CCCGGG | 1 cut(s) | 353 |
| CpoI | CGGWCCG | 1 cut(s) | 365 |
| CseI | GACGC | 2 cut(s) | 430, 633 |
| Csp6I | GTAC | 3 cut(s) | 424, 574, 703 |
| CspAI | ACCGGT | 1 cut(s) | 362 |
| CspI | CGGWCCG | 1 cut(s) | 365 |
| CviAII | CATG | 2 cut(s) | 388, 583 |
| CviQI | GTAC | 3 cut(s) | 424, 574, 703 |
| DdeI | CTNAG | 3 cut(s) | 86, 297, 322 |
| DpnI | GATC | 3 cut(s) | 139, 181, 715 |
| DpnII | GATC | 3 cut(s) | 137, 179, 713 |
| DriI | GACNNNNNGTC | 1 cut(s) | 621 |
| EaeI | YGGCCR | 2 cut(s) | 332, 401 |
| EagI | CGGCCG | 1 cut(s) | 401 |
| Eam1104I | CTCTTC | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 621 |
| EarI | CTCTTC | 1 cut(s) | 306 |
| EciI | GGCGGA | 2 cut(s) | 150, 225 |
| EclXI | CGGCCG | 1 cut(s) | 401 |
| Eco47I | GGWCC | 1 cut(s) | 365 |
| Eco52I | CGGCCG | 1 cut(s) | 401 |
| Eco72I | CACGTG | 3 cut(s) | 330, 519, 708 |
| Eco81I | CCTNAGG | 1 cut(s) | 297 |
| Eco88I | CYCGRG | 1 cut(s) | 353 |
| EcoRII | CCWGG | 1 cut(s) | 504 |
| Esp3I | CGTCTC | 3 cut(s) | 503, 596, 632 |
| FaeI | CATG | 2 cut(s) | 391, 586 |
| FatI | CATG | 2 cut(s) | 387, 582 |
| FauI | CCCGC | 1 cut(s) | 749 |
| Fnu4HI | GCNGC | 3 cut(s) | 401, 725, 786 |
| FokI | GGATG | 2 cut(s) | 511, 620 |
| Fsp4HI | GCNGC | 3 cut(s) | 401, 725, 786 |
| GlaI | GCGC | 1 cut(s) | 789 |
| GluI | GCNGC | 3 cut(s) | 401, 725, 786 |
| GsuI | CTGGAG | 1 cut(s) | 527 |
| HaeIII | GGCC | 4 cut(s) | 334, 403, 662, 801 |
| HgaI | GACGC | 2 cut(s) | 430, 633 |
| HhaI | GCGC | 1 cut(s) | 790 |
| Hin1I | GRCGYC | 1 cut(s) | 644 |
| Hin1II | CATG | 2 cut(s) | 391, 586 |
| Hin6I | GCGC | 1 cut(s) | 788 |
| HinP1I | GCGC | 1 cut(s) | 788 |
| HinfI | GANTC | 4 cut(s) | 90, 286, 302, 419 |
| HphI | GGTGA | 6 cut(s) | 394, 418, 436, 625, 643, 662 |
| Hpy166II | GTNNAC | 5 cut(s) | 385, 436, 480, 681, 705 |
| Hpy188I | TCNGA | 2 cut(s) | 108, 538 |
| Hpy188III | TCNNGA | 5 cut(s) | 290, 308, 343, 368, 593 |
| Hpy8I | GTNNAC | 5 cut(s) | 385, 436, 480, 681, 705 |
| Hpy99I | CGWCG | 1 cut(s) | 488 |
| HpyAV | CCTTC | 5 cut(s) | 162, 217, 455, 628, 673 |
| HpyCH4III | ACNGT | 4 cut(s) | 164, 433, 542, 619 |
| HpyCH4IV | ACGT | 8 cut(s) | 329, 426, 452, 518, 683, 707, 735, 777 |
| HpyCH4V | TGCA | 3 cut(s) | 207, 687, 700 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 397, 674, 807 |
| HpyF3I | CTNAG | 3 cut(s) | 86, 297, 322 |
| HpySE526I | ACGT | 8 cut(s) | 329, 426, 452, 518, 683, 707, 735, 777 |
| Hsp92I | GRCGYC | 1 cut(s) | 644 |
| Hsp92II | CATG | 2 cut(s) | 391, 586 |
| HspAI | GCGC | 1 cut(s) | 788 |
| Kpn2I | TCCGGA | 3 cut(s) | 289, 307, 367 |
| KroI | GCCGGC | 1 cut(s) | 391 |
| KroNI | GCCGGC | 1 cut(s) | 393 |
| Kzo9I | GATC | 3 cut(s) | 137, 179, 713 |
| LguI | GCTCTTC | 1 cut(s) | 306 |
| LmnI | GCTCC | 2 cut(s) | 109, 464 |
| Lsp1109I | GCAGC | 2 cut(s) | 711, 772 |
| MaeII | ACGT | 8 cut(s) | 329, 426, 452, 518, 683, 707, 735, 777 |
| MaeIII | GTNAC | 5 cut(s) | 259, 427, 442, 613, 731 |
| MalI | GATC | 3 cut(s) | 139, 181, 715 |
| MboI | GATC | 3 cut(s) | 137, 179, 713 |
| MboII | GAAGA | 3 cut(s) | 222, 259, 323 |
| MflI | RGATCY | 2 cut(s) | 137, 713 |
| MlyI | GAGTC | 3 cut(s) | 295, 296, 428 |
| MmeI | TCCRAC | 2 cut(s) | 97, 753 |
| MroI | TCCGGA | 3 cut(s) | 289, 307, 367 |
| MroNI | GCCGGC | 1 cut(s) | 391 |
| MspR9I | CCNGG | 6 cut(s) | 354, 355, 506, 525, 569, 674 |
| MvaI | CCWGG | 1 cut(s) | 506 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 397, 674, 807 |
| NaeI | GCCGGC | 1 cut(s) | 393 |
| NciI | CCSGG | 5 cut(s) | 354, 355, 525, 569, 674 |
| NdeII | GATC | 3 cut(s) | 137, 179, 713 |
| NgoMIV | GCCGGC | 1 cut(s) | 391 |
| NlaIII | CATG | 2 cut(s) | 391, 586 |
| NlaIV | GGNNCC | 2 cut(s) | 294, 715 |
| NmeAIII | GCCGAG | 1 cut(s) | 360 |
| NmuCI | GTSAC | 5 cut(s) | 259, 427, 442, 613, 731 |
| NspI | RCATGY | 1 cut(s) | 391 |
| PciSI | GCTCTTC | 1 cut(s) | 306 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 423, 569 |
| PdiI | GCCGGC | 1 cut(s) | 393 |
| PfeI | GAWTC | 1 cut(s) | 90 |
| Pfl23II | CGTACG | 1 cut(s) | 423 |
| PflFI | GACNNNGTC | 2 cut(s) | 440, 643 |
| PinAI | ACCGGT | 1 cut(s) | 362 |
| PkrI | GCNGC | 3 cut(s) | 402, 726, 787 |
| PleI | GAGTC | 3 cut(s) | 294, 296, 427 |
| PmaCI | CACGTG | 3 cut(s) | 330, 519, 708 |
| PmlI | CACGTG | 3 cut(s) | 330, 519, 708 |
| PpsI | GAGTC | 3 cut(s) | 294, 296, 427 |
| Ppu21I | YACGTR | 6 cut(s) | 330, 427, 453, 519, 684, 708 |
| PshAI | GACNNNNGTC | 1 cut(s) | 519 |
| Psp6I | CCWGG | 1 cut(s) | 504 |
| PspCI | CACGTG | 3 cut(s) | 330, 519, 708 |
| PspGI | CCWGG | 1 cut(s) | 504 |
| PspLI | CGTACG | 1 cut(s) | 423 |
| PspN4I | GGNNCC | 2 cut(s) | 294, 715 |
| PspPI | GGNCC | 2 cut(s) | 365, 799 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 557, 589 |
| PsuI | RGATCY | 2 cut(s) | 137, 713 |
| PsyI | GACNNNGTC | 2 cut(s) | 440, 643 |
| RsaI | GTAC | 3 cut(s) | 425, 575, 704 |
| RsaNI | GTAC | 3 cut(s) | 424, 574, 703 |
| Rsr2I | CGGWCCG | 1 cut(s) | 365 |
| RsrII | CGGWCCG | 1 cut(s) | 365 |
| SapI | GCTCTTC | 1 cut(s) | 306 |
| SatI | GCNGC | 3 cut(s) | 401, 725, 786 |
| Sau3AI | GATC | 3 cut(s) | 137, 179, 713 |
| Sau96I | GGNCC | 2 cut(s) | 365, 799 |
| SchI | GAGTC | 3 cut(s) | 295, 296, 428 |
| ScrFI | CCNGG | 6 cut(s) | 354, 355, 506, 525, 569, 674 |
| SfcI | CTRYAG | 1 cut(s) | 163 |
| SinI | GGWCC | 1 cut(s) | 365 |
| SmaI | CCCGGG | 1 cut(s) | 355 |
| SsiI | CCGC | 9 cut(s) | 15, 135, 202, 220, 236, 400, 656, 756, 769 |
| StyD4I | CCNGG | 6 cut(s) | 352, 353, 504, 523, 567, 672 |
| TaaI | ACNGT | 4 cut(s) | 164, 433, 542, 619 |
| TaiI | ACGT | 8 cut(s) | 332, 429, 455, 521, 686, 710, 738, 780 |
| TaqI | TCGA | 3 cut(s) | 65, 342, 417 |
| TatI | WGTACW | 1 cut(s) | 702 |
| TauI | GCSGC | 1 cut(s) | 403 |
| TfiI | GAWTC | 1 cut(s) | 90 |
| TseFI | GTSAC | 5 cut(s) | 259, 427, 442, 613, 731 |
| TseI | GCWGC | 2 cut(s) | 724, 785 |
| Tsp45I | GTSAC | 5 cut(s) | 259, 427, 442, 613, 731 |
| TspGWI | ACGGA | 3 cut(s) | 83, 527, 620 |
| TspMI | CCCGGG | 1 cut(s) | 353 |
| Tth111I | GACNNNGTC | 2 cut(s) | 440, 643 |
| VpaK11BI | GGWCC | 1 cut(s) | 365 |
| XceI | RCATGY | 1 cut(s) | 391 |
| XmaI | CCCGGG | 1 cut(s) | 353 |