Rorug02G0283000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000123
Physical Location & Seq
Reverse (-)
30681811 .. 30684384
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0283000.1

Sequence Viewer

Length: 1710 bp
ATGAAGGTTTCCAGAATTAGCCTGCATCTGCAACTTTTGGGGTTGTTATTGGCTGTTAATGGCTTCCTCCTCCATTGCCAAGCTTGGCCAGCTCGTTACACTTTTGTGGTGGAAAACACTCCATACAAAAGACTCTGCAGCACAAAGAACATCTTGACTGTAAATGGCCAGTTTCCGGGACCGACTTTGCATGTTCATAAAGGACACACTATCATCGTCGATGTCTTTAACAAAGGCAATCGTAACATTACTATCCACTGGCATGGTGTTGCGCAACCAAGAAATCCATGGTCGGACGGACCAGAGTATATCACACAGTGCCCAATTCAACCGGGAGCCAAGTTCACCCAAAAGATCATTTTCTCAAAGGAGGAAGGCACCCTTTGGTGGCATGCTCACAGTGAGTGGGATCGAGCCACTGTCCACGGTCCCATCATCATATACCCCAACAAGAAGAAGAATTACCCTTTTGGCAAGCCTCATGCAGAAATTCCAATCATATTGGGAGAGTGGTGGAAGGTAGATATAGGGAACCTTTATACTCAAACTCTTCAAGCCGGAGGGGAACCTAATACTTCCGACGCTTATCTCATCAATGGTCAACCTGGCGATCTGTATCCATGCTCTAAATCAGAGACGTTCAAGGTGATGGTTGATTATGGCAAAACCTACCTACTGAGACTAATCAACTCCGGTCTGCAAGAGATTCTGTTTTTCGCCATCGCCAATCACAAAGTCACAGTCGTAGGAACAGATGCTAGCTACACCAAGCCTTTCACAACGGATTATGTCACCATCTCACCTGGTCAAACCATTGACCTTTTGCTCCATGCTAATCAGAGGCCTAACCACTACTACATGGCCGCTACAGCCTACGTAGGTGGCGCTGTTCCTTATGATAACACCACCACCACAGCCCTACTACAATACAAGAATCGGGGTTACACCCCTTCTTCAACCCCTTTCTTTCCTAATCTTCCTGCTCACAATGACACTAATGCATCAGTTCATTTTAGTGGTAGTCTCAGGAGCTTGGCTGATAAAAACCATCCCATTGACGTTCCACGAAAAATTACAACTCCCTTGTTTTATACCGTCTCCGTCAACACGTTCCAGTGCCCCAATAATTCATGTGCTGGGCCTAACGGGACGCGTCTGGCCGCTAGTGTAAACAACATTAGCTTTGTGAACCCTAGCATTGACATACTACAAGCTTACTATTACCATGTCAACGGGGTATTTGGAACTCGGTTTCCAGATTTCCCGCCTTTGCTGTTTAACTTTACAGCACAGTACTTGCCGCTGTACCTTCAGACCCCAAAACGAGGGACAGAGGTGCAGGTACTGGAGTACAACGCGACAGTGGAGCTTGTGTTTCAGGGGACTAATTTGGTGGCAGGGGATGACCATCCAATGCATCTTCATGGTTACAGTTTCTATGTGGTTGGATTGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATACAATCTTGTTGATCCTCCTCTTCAAAACACCATTGCTGTCCCTGTAAATGGGTGGACTACCATCAGATTCAAGGCTGACAATCCTGGAGTTTGGTTTATGCATTGCCATCTGGATAGGCATATGTCATGGGGCATGGATACGACATTTATAGTAAAAAATGGAAAGGGACCTAAAGCTCAAATCTTACCTCCACCACCAGATATGCCACCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

569

Amino Acids

63.69

Weight (kDa)

8.67

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 151 6.1e-40 Multicopper oxidase
Cu-oxidase PF00394 164 - 312 6.4e-40 Multicopper oxidase
Cu-oxidase_2 PF07731 421 - 552 7.8e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 1330
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 2 cut(s) 1153, 1358
AciI CCGC 4 cut(s) 864, 1161, 1265, 1301
AclWI GGATC 2 cut(s) 417, 1499
AcoI YGGCCR 4 cut(s) 86, 166, 861, 1158
AcsI RAATTY 1 cut(s) 489
AcuI CTGAAG 1 cut(s) 1295
AdeI CACNNNGTG 1 cut(s) 318
AfaI GTAC 4 cut(s) 1295, 1307, 1344, 1352
AfiI CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
AflIII ACRYGT 2 cut(s) 1107, 1151
AgsI TTSAA 7 cut(s) 329, 554, 643, 957, 1489, 1517, 1564
AjnI CCWGG 3 cut(s) 604, 802, 1576
AleI CACNNNNGTG 1 cut(s) 104
AloI GAACNNNNNNTCC 2 cut(s) 1237, 1269
AluBI AGCT 8 cut(s) 83, 92, 762, 1032, 1182, 1214, 1369, 1670
AluI AGCT 8 cut(s) 83, 92, 762, 1032, 1182, 1214, 1369, 1670
Alw26I GTCTC 4 cut(s) 629, 673, 1028, 1102
AlwI GGATC 2 cut(s) 417, 1499
AlwNI CAGNNNCTG 1 cut(s) 1345
AoxI GGCC 6 cut(s) 86, 166, 842, 861, 1139, 1158
ApeKI GCWGC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 489
ArsI GACNNNNNNTTYG 2 cut(s) 726, 758
AspLEI GCGC 2 cut(s) 274, 887
AspS9I GGNCC 6 cut(s) 179, 299, 428, 1139, 1480, 1661
AsuC2I CCSGG 2 cut(s) 177, 333
AsuHPI GGTGA 4 cut(s) 337, 658, 784, 792
AsuNHI GCTAGC 1 cut(s) 758
AvaII GGWCC 5 cut(s) 179, 299, 428, 1480, 1661
BaeGI GKGCMC 2 cut(s) 323, 1121
BaeI ACNNNNGTAYC 2 cut(s) 1334, 1367
BalI TGGCCA 2 cut(s) 88, 168
BanI GGYRCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbvI GCAGC 1 cut(s) 150
BccI CCATC 8 cut(s) 440, 643, 728, 803, 1056, 1416, 1562, 1608
BciT130I CCWGG 3 cut(s) 606, 804, 1578
BciVI GTATCC 2 cut(s) 627, 1624
BcnI CCSGG 2 cut(s) 177, 333
BcoDI GTCTC 4 cut(s) 629, 673, 1028, 1102
BfaI CTAG 3 cut(s) 759, 1164, 1194
BfmI CTRYAG 2 cut(s) 136, 867
BfoI RGCGCY 1 cut(s) 888
BfuAI ACCTGC 1 cut(s) 1330
BfuI GTATCC 2 cut(s) 627, 1624
BisI GCNGC 4 cut(s) 139, 864, 1161, 1301
BlsI GCNGC 4 cut(s) 140, 865, 1162, 1302
BmcAI AGTACT 1 cut(s) 1295
Bme1390I CCNGG 5 cut(s) 177, 333, 606, 804, 1578
Bme18I GGWCC 5 cut(s) 179, 299, 428, 1480, 1661
BmgT120I GGNCC 6 cut(s) 179, 299, 428, 1139, 1480, 1661
BmiI GGNNCC 8 cut(s) 180, 337, 379, 430, 533, 567, 1482, 1662
BmrFI CCNGG 5 cut(s) 177, 333, 606, 804, 1578
BmsI GCATC 4 cut(s) 34, 745, 1010, 1426
BmtI GCTAGC 1 cut(s) 762
BpmI CTGGAG 2 cut(s) 1367, 1599
BpuMI CCSGG 2 cut(s) 177, 333
BsaAI YACGTR 1 cut(s) 877
BsaBI GATNNNNATC 2 cut(s) 615, 1407
BsaJI CCNNGG 2 cut(s) 287, 424
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 2 cut(s) 1358, 1388
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
Bse1I ACTGG 4 cut(s) 169, 263, 1114, 1350
Bse3DI GCAATG 3 cut(s) 73, 1524, 1594
Bse8I GATNNNNATC 2 cut(s) 615, 1407
BseBI CCWGG 3 cut(s) 606, 804, 1578
BseDI CCNNGG 2 cut(s) 287, 424
BseGI GGATG 3 cut(s) 1048, 1408, 1408
BseJI GATNNNNATC 2 cut(s) 615, 1407
BseLI CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
BseMI GCAATG 3 cut(s) 73, 1524, 1594
BseMII CTCAG 2 cut(s) 668, 1039
BseNI ACTGG 4 cut(s) 169, 263, 1114, 1350
BseRI GAGGAG 2 cut(s) 59, 1500
BseSI GKGCMC 2 cut(s) 323, 1121
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 1136
BsgI GTGCAG 1 cut(s) 1358
Bsh1236I CGCG 2 cut(s) 1153, 1358
BshFI GGCC 6 cut(s) 88, 168, 844, 863, 1141, 1160
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 4 cut(s) 176, 332, 558, 693
BslFI GGGAC 7 cut(s) 192, 414, 1162, 1342, 1396, 1517, 1674
BslI CCNNNNNNNGG 4 cut(s) 175, 387, 1325, 1541
BsmAI GTCTC 4 cut(s) 629, 673, 1028, 1102
BsmBI CGTCTC 2 cut(s) 629, 1102
BsmFI GGGAC 7 cut(s) 192, 414, 1162, 1342, 1396, 1517, 1674
BsnI GGCC 6 cut(s) 88, 168, 844, 863, 1141, 1160
Bsp1286I GDGCHC 2 cut(s) 323, 1121
Bsp143I GATC 4 cut(s) 354, 409, 610, 1504
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 4 cut(s) 864, 1161, 1265, 1301
BspANI GGCC 6 cut(s) 88, 168, 844, 863, 1141, 1160
BspCNI CTCAG 2 cut(s) 669, 1038
BspFNI CGCG 2 cut(s) 1153, 1358
BspLI GGNNCC 8 cut(s) 180, 337, 379, 430, 533, 567, 1482, 1662
BspMAI CTGCAG 1 cut(s) 140
BspMI ACCTGC 1 cut(s) 1330
BspOI GCTAGC 1 cut(s) 762
BspPI GGATC 2 cut(s) 417, 1499
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 3 cut(s) 73, 1524, 1594
BsrI ACTGG 4 cut(s) 169, 263, 1114, 1350
BssECI CCNNGG 2 cut(s) 287, 424
BssMI GATC 4 cut(s) 354, 409, 610, 1504
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 3 cut(s) 606, 804, 1578
Bst6I CTCTTC 2 cut(s) 555, 1518
BstBAI YACGTR 1 cut(s) 877
BstC8I GCNNGC 5 cut(s) 23, 90, 393, 476, 760
BstDEI CTNAG 2 cut(s) 677, 1025
BstDSI CCRYGG 2 cut(s) 287, 424
BstF5I GGATG 3 cut(s) 1048, 1408, 1408
BstFNI CGCG 2 cut(s) 1153, 1358
BstH2I RGCGCY 1 cut(s) 888
BstHHI GCGC 2 cut(s) 274, 887
BstKTI GATC 4 cut(s) 357, 412, 613, 1507
BstMAI GTCTC 4 cut(s) 629, 673, 1028, 1102
BstMBI GATC 4 cut(s) 354, 409, 610, 1504
BstMWI GCNNNNNNNGC 2 cut(s) 89, 869
BstNI CCWGG 3 cut(s) 606, 804, 1578
BstNSI RCATGY 2 cut(s) 194, 395
BstSCI CCNGG 5 cut(s) 175, 331, 604, 802, 1576
BstSFI CTRYAG 2 cut(s) 136, 867
BstSLI GKGCMC 2 cut(s) 323, 1121
BstSNI TACGTA 1 cut(s) 877
BstUI CGCG 2 cut(s) 1153, 1358
BstV1I GCAGC 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuI GTATCC 2 cut(s) 627, 1624
BsuRI GGCC 6 cut(s) 88, 168, 844, 863, 1141, 1160
BtgI CCRYGG 2 cut(s) 287, 424
BtgZI GCGATG 1 cut(s) 706
BtsCI GGATG 3 cut(s) 1048, 1408, 1408
BtsIMutI CAGTG 6 cut(s) 256, 323, 406, 417, 1121, 1368
BveI ACCTGC 1 cut(s) 1330
Cac8I GCNNGC 5 cut(s) 23, 90, 393, 476, 760
CaiI CAGNNNCTG 1 cut(s) 1345
CfoI GCGC 2 cut(s) 274, 887
Cfr13I GGNCC 6 cut(s) 179, 299, 428, 1139, 1480, 1661
CseI GACGC 3 cut(s) 590, 1142, 1159
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 4 cut(s) 1294, 1306, 1343, 1351
CviQI GTAC 4 cut(s) 1294, 1306, 1343, 1351
DdeI CTNAG 2 cut(s) 677, 1025
DpnI GATC 4 cut(s) 356, 411, 612, 1506
DpnII GATC 4 cut(s) 354, 409, 610, 1504
DraIII CACNNNGTG 1 cut(s) 318
EaeI YGGCCR 4 cut(s) 86, 166, 861, 1158
Eam1104I CTCTTC 2 cut(s) 555, 1518
EarI CTCTTC 2 cut(s) 555, 1518
Eco105I TACGTA 1 cut(s) 877
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 844
Eco47I GGWCC 5 cut(s) 179, 299, 428, 1480, 1661
Eco57I CTGAAG 1 cut(s) 1295
EcoO109I RGGNCCY 2 cut(s) 1480, 1661
EcoRII CCWGG 3 cut(s) 604, 802, 1576
EcoT14I CCWWGG 1 cut(s) 287
EcoT22I ATGCAT 3 cut(s) 1003, 1419, 1596
ErhI CCWWGG 1 cut(s) 287
Esp3I CGTCTC 2 cut(s) 629, 1102
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 366, 398
FaqI GGGAC 7 cut(s) 192, 414, 1162, 1342, 1396, 1517, 1674
FauI CCCGC 1 cut(s) 1272
FauNDI CATATG 1 cut(s) 1614
Fnu4HI GCNGC 4 cut(s) 139, 864, 1161, 1301
FokI GGATG 3 cut(s) 1035, 1395, 1415
Fsp4HI GCNGC 4 cut(s) 139, 864, 1161, 1301
FspBI CTAG 3 cut(s) 759, 1164, 1194
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 2 cut(s) 273, 886
GluI GCNGC 4 cut(s) 139, 864, 1161, 1301
GsaI CCCAGC 1 cut(s) 1140
GsuI CTGGAG 2 cut(s) 1367, 1599
HaeII RGCGCY 1 cut(s) 888
HaeIII GGCC 6 cut(s) 88, 168, 844, 863, 1141, 1160
HapII CCGG 4 cut(s) 176, 332, 558, 693
HgaI GACGC 3 cut(s) 590, 1142, 1159
HhaI GCGC 2 cut(s) 274, 887
Hin6I GCGC 2 cut(s) 272, 885
HinP1I GCGC 2 cut(s) 272, 885
HincII GTYRAC 3 cut(s) 602, 1105, 1231
HindII GTYRAC 3 cut(s) 602, 1105, 1231
HindIII AAGCTT 2 cut(s) 81, 1212
HinfI GANTC 4 cut(s) 132, 706, 934, 1560
HpaII CCGG 4 cut(s) 176, 332, 558, 693
HphI GGTGA 4 cut(s) 337, 658, 784, 792
Hpy166II GTNNAC 8 cut(s) 345, 424, 602, 1105, 1171, 1189, 1231, 1548
Hpy188I TCNGA 6 cut(s) 295, 580, 634, 840, 1314, 1559
Hpy188III TCNNGA 5 cut(s) 12, 154, 1027, 1256, 1604
Hpy8I GTNNAC 8 cut(s) 345, 424, 602, 1105, 1171, 1189, 1231, 1548
Hpy99I CGWCG 2 cut(s) 221, 584
HpyAV CCTTC 4 cut(s) 368, 511, 960, 1319
HpyCH4IV ACGT 4 cut(s) 638, 876, 1059, 1109
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 869
HpyF3I CTNAG 2 cut(s) 677, 1025
HpySE526I ACGT 4 cut(s) 638, 876, 1059, 1109
HspAI GCGC 2 cut(s) 272, 885
Kzo9I GATC 4 cut(s) 354, 409, 610, 1504
LmnI GCTCC 4 cut(s) 335, 831, 1029, 1366
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 4 cut(s) 34, 745, 1010, 1426
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 3 cut(s) 759, 1164, 1194
MaeII ACGT 4 cut(s) 638, 876, 1059, 1109
MaeIII GTNAC 6 cut(s) 95, 242, 736, 790, 941, 1427
MalI GATC 4 cut(s) 356, 411, 612, 1506
MboI GATC 4 cut(s) 354, 409, 610, 1504
MboII GAAGA 7 cut(s) 466, 469, 542, 945, 968, 1412, 1505
MhlI GDGCHC 2 cut(s) 323, 1121
MlsI TGGCCA 2 cut(s) 88, 168
MluCI AATT 7 cut(s) 15, 324, 460, 489, 1071, 1126, 1387
MluI ACGCGT 1 cut(s) 1151
MluNI TGGCCA 2 cut(s) 88, 168
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 3 cut(s) 273, 603, 1426
Mox20I TGGCCA 2 cut(s) 88, 168
Mph1103I ATGCAT 3 cut(s) 1003, 1419, 1596
MscI TGGCCA 2 cut(s) 88, 168
MseI TTAA 3 cut(s) 57, 228, 1278
MslI CAYNNNNRTG 4 cut(s) 104, 261, 1014, 1422
Msp20I TGGCCA 2 cut(s) 88, 168
MspA1I CMGCKG 1 cut(s) 1303
MspI CCGG 4 cut(s) 176, 332, 558, 693
MspR9I CCNGG 5 cut(s) 177, 333, 606, 804, 1578
MvaI CCWGG 3 cut(s) 606, 804, 1578
MvnI CGCG 2 cut(s) 1153, 1358
MwoI GCNNNNNNNGC 2 cut(s) 89, 869
NciI CCSGG 2 cut(s) 177, 333
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 1614
NdeII GATC 4 cut(s) 354, 409, 610, 1504
NheI GCTAGC 1 cut(s) 758
NlaIV GGNNCC 8 cut(s) 180, 337, 379, 430, 533, 567, 1482, 1662
NmuCI GTSAC 2 cut(s) 736, 790
NsbI TGCGCA 1 cut(s) 273
NsiI ATGCAT 3 cut(s) 1003, 1419, 1596
NspI RCATGY 2 cut(s) 194, 395
OliI CACNNNNGTG 1 cut(s) 104
PaeI GCATGC 1 cut(s) 395
PceI AGGCCT 1 cut(s) 844
PfeI GAWTC 3 cut(s) 706, 934, 1560
PfoI TCCNGGA 2 cut(s) 175, 1576
PkrI GCNGC 4 cut(s) 140, 865, 1162, 1302
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 877
PpuMI RGGWCCY 2 cut(s) 1480, 1661
Psp5II RGGWCCY 2 cut(s) 1480, 1661
Psp6I CCWGG 3 cut(s) 604, 802, 1576
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 3 cut(s) 604, 802, 1576
PspN4I GGNNCC 8 cut(s) 180, 337, 379, 430, 533, 567, 1482, 1662
PspPI GGNCC 6 cut(s) 179, 299, 428, 1139, 1480, 1661
PspPPI RGGWCCY 2 cut(s) 1480, 1661
PstI CTGCAG 1 cut(s) 140
PstNI CAGNNNCTG 1 cut(s) 1345
RsaI GTAC 4 cut(s) 1295, 1307, 1344, 1352
RsaNI GTAC 4 cut(s) 1294, 1306, 1343, 1351
RseI CAYNNNNRTG 4 cut(s) 104, 261, 1014, 1422
SaqAI TTAA 3 cut(s) 57, 228, 1278
SatI GCNGC 4 cut(s) 139, 864, 1161, 1301
Sau3AI GATC 4 cut(s) 354, 409, 610, 1504
Sau96I GGNCC 6 cut(s) 179, 299, 428, 1139, 1480, 1661
ScaI AGTACT 1 cut(s) 1295
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 5 cut(s) 177, 333, 606, 804, 1578
SduI GDGCHC 2 cut(s) 323, 1121
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 4 cut(s) 34, 745, 1010, 1426
SfcI CTRYAG 2 cut(s) 136, 867
SinI GGWCC 5 cut(s) 179, 299, 428, 1480, 1661
SmiMI CAYNNNNRTG 4 cut(s) 104, 261, 1014, 1422
SnaBI TACGTA 1 cut(s) 877
SphI GCATGC 1 cut(s) 395
Sse9I AATT 7 cut(s) 15, 324, 460, 489, 1071, 1126, 1387
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 4 cut(s) 864, 1161, 1265, 1301
SspMI CTAG 3 cut(s) 759, 1164, 1194
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 5 cut(s) 175, 331, 604, 802, 1576
StyI CCWWGG 1 cut(s) 287
TaiI ACGT 4 cut(s) 641, 879, 1062, 1112
TaqI TCGA 2 cut(s) 219, 412
TaqII GACCGA 1 cut(s) 196
TasI AATT 7 cut(s) 15, 324, 460, 489, 1071, 1126, 1387
TatI WGTACW 2 cut(s) 1293, 1350
TauI GCSGC 3 cut(s) 866, 1163, 1303
TfiI GAWTC 3 cut(s) 706, 934, 1560
Tru1I TTAA 3 cut(s) 57, 228, 1278
Tru9I TTAA 3 cut(s) 57, 228, 1278
TscAI CASTG 6 cut(s) 263, 323, 406, 424, 1121, 1368
TseFI GTSAC 2 cut(s) 736, 790
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 2 cut(s) 736, 790
TspDTI ATGAA 5 cut(s) 17, 185, 998, 1119, 1412
TspGWI ACGGA 3 cut(s) 312, 797, 1090
TspRI CASTG 6 cut(s) 263, 323, 406, 424, 1121, 1368
VpaK11BI GGWCC 5 cut(s) 179, 299, 428, 1480, 1661
XapI RAATTY 1 cut(s) 489
XceI RCATGY 2 cut(s) 194, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XspI CTAG 3 cut(s) 759, 1164, 1194
ZrmI AGTACT 1 cut(s) 1295
Zsp2I ATGCAT 3 cut(s) 1003, 1419, 1596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.