Rmu_sc0001557.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001557.1
OG0000123
Physical Location & Seq
Reverse (-)
14606 .. 15394
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001557.1_g000004.1.cds

Sequence Viewer

Length: 708 bp
atgggttcgacatccttacttaatcccatattctatgacttatacctcttgcacttgatggtggctttaatgctaacagcaaaacgggtgtttgtttcaacagccgtgtcagtgttggttgagctccagtacgagaagtgccatgggctctgtgctgcgtatggtttctttggacatggcggaggtgtgtgtgataggaggttggagatggaggcactgccgctggcagtgtcggattgtgaaggtacagatcgtggtgggctgagatcgacgccgtgttcgccgacttctgtggctgcgttcggcggtttggggacgtcccatgaggcgtcgaaggggttagcggtgctggaaggggcggaagaagccgtgacgggcttgggattagcagctgctgcaagtgtaactcggctgccgattggtgggttgggcctcaattatgctggtgcagacctggggcctctttctgctgagagacattcgaaggcggccttggttgtgaagagagagcaattcaagccaagtttagctattataccacgggagtttcagctcggtgaattggtggaggttccggtttctttggggccaactccaaagaaaaggggtcgtcctcgcaagtatacgttggcaaaagaaattgaaggtcataattcaggttcggatataagctccaactcgatagggaaggagctgtttattgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

24.68

Weight (kDa)

7.01

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 320
AccI GTMKAC 1 cut(s) 623
AciI CCGC 6 cut(s) 180, 221, 306, 344, 359, 488
AcyI GRCGYC 3 cut(s) 272, 317, 329
AfaI GTAC 2 cut(s) 131, 247
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 3 cut(s) 99, 517, 644
AjnI CCWGG 1 cut(s) 453
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 6 cut(s) 124, 392, 530, 553, 672, 694
AluI AGCT 6 cut(s) 124, 392, 530, 553, 672, 694
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 469
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 4 cut(s) 430, 458, 489, 587
ApeKI GCWGC 6 cut(s) 155, 296, 389, 392, 395, 412
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspS9I GGNCC 3 cut(s) 430, 458, 587
AsuHPI GGTGA 1 cut(s) 569
AsuII TTCGAA 1 cut(s) 482
BanII GRGCYC 2 cut(s) 126, 150
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 6 cut(s) 142, 283, 379, 382, 399, 401
BccI CCATC 2 cut(s) 52, 202
BceAI ACGGC 3 cut(s) 89, 259, 353
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 469
BisI GCNGC 8 cut(s) 156, 221, 297, 390, 393, 396, 413, 489
BlsI GCNGC 8 cut(s) 157, 222, 298, 391, 394, 397, 414, 490
Bme1390I CCNGG 1 cut(s) 455
BmgT120I GGNCC 3 cut(s) 430, 458, 587
BmiI GGNNCC 3 cut(s) 459, 573, 588
BmrFI CCNGG 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 110
Bpu14I TTCGAA 1 cut(s) 482
BsaHI GRCGYC 3 cut(s) 272, 317, 329
BsaJI CCNNGG 4 cut(s) 142, 454, 492, 539
BsaWI WCCGGW 1 cut(s) 574
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 4 cut(s) 142, 454, 492, 539
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMII CTCAG 2 cut(s) 254, 462
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 6 cut(s) 142, 283, 379, 382, 399, 401
BsgI GTGCAG 1 cut(s) 468
BshFI GGCC 4 cut(s) 432, 460, 491, 589
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 575
BslFI GGGAC 2 cut(s) 304, 328
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 469
BsmFI GGGAC 2 cut(s) 304, 328
BsnI GGCC 4 cut(s) 432, 460, 491, 589
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 126, 150
Bsp143I GATC 2 cut(s) 250, 266
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 6 cut(s) 180, 221, 306, 344, 359, 488
BspANI GGCC 4 cut(s) 432, 460, 491, 589
BspCNI CTCAG 2 cut(s) 255, 463
BspLI GGNNCC 3 cut(s) 459, 573, 588
BspT104I TTCGAA 1 cut(s) 482
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 4 cut(s) 142, 454, 492, 539
BssMI GATC 2 cut(s) 250, 266
BssNAI GTATAC 1 cut(s) 624
BssNI GRCGYC 3 cut(s) 272, 317, 329
BssT1I CCWWGG 2 cut(s) 142, 492
Bst1107I GTATAC 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 3 cut(s) 272, 317, 329
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 263, 471
BstDSI CCRYGG 2 cut(s) 142, 539
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 2 cut(s) 253, 269
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 2 cut(s) 250, 266
BstMWI GCNNNNNNNGC 4 cut(s) 280, 365, 395, 517
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BstV1I GCAGC 6 cut(s) 142, 283, 379, 382, 399, 401
BstZ17I GTATAC 1 cut(s) 624
BsuRI GGCC 4 cut(s) 432, 460, 491, 589
BtgI CCRYGG 2 cut(s) 142, 539
BtsCI GGATG 1 cut(s) 11
BtsI GCAGTG 2 cut(s) 215, 234
BtsIMutI CAGTG 3 cut(s) 117, 215, 234
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 430, 458, 587
CseI GACGC 2 cut(s) 280, 318
Csp6I GTAC 2 cut(s) 130, 246
CviAII CATG 3 cut(s) 143, 176, 323
CviQI GTAC 2 cut(s) 130, 246
DdeI CTNAG 2 cut(s) 263, 471
DpnI GATC 2 cut(s) 252, 268
DpnII GATC 2 cut(s) 250, 266
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
EciI GGCGGA 2 cut(s) 195, 374
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 142, 492
Eco24I GRGCYC 2 cut(s) 126, 150
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 142, 492
EcoT38I GRGCYC 2 cut(s) 126, 150
ErhI CCWWGG 2 cut(s) 142, 492
FaeI CATG 3 cut(s) 146, 179, 326
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 2 cut(s) 304, 328
FatI CATG 3 cut(s) 142, 175, 322
FblI GTMKAC 1 cut(s) 623
Fnu4HI GCNGC 8 cut(s) 156, 221, 297, 390, 393, 396, 413, 489
FriOI GRGCYC 2 cut(s) 126, 150
Fsp4HI GCNGC 8 cut(s) 156, 221, 297, 390, 393, 396, 413, 489
GluI GCNGC 8 cut(s) 156, 221, 297, 390, 393, 396, 413, 489
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 4 cut(s) 432, 460, 491, 589
HapII CCGG 1 cut(s) 575
HgaI GACGC 2 cut(s) 280, 318
Hin1I GRCGYC 3 cut(s) 272, 317, 329
Hin1II CATG 3 cut(s) 146, 179, 326
HpaII CCGG 1 cut(s) 575
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 2 cut(s) 235, 664
Hpy8I GTNNAC 1 cut(s) 624
Hpy99I CGWCG 2 cut(s) 274, 334
HpyAV CCTTC 6 cut(s) 236, 328, 347, 478, 638, 682
HpyCH4IV ACGT 2 cut(s) 317, 626
HpyCH4V TGCA 3 cut(s) 52, 398, 449
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 365, 395, 517
HpyF3I CTNAG 2 cut(s) 263, 471
HpySE526I ACGT 2 cut(s) 317, 626
Hsp92I GRCGYC 3 cut(s) 272, 317, 329
Hsp92II CATG 3 cut(s) 146, 179, 326
Kzo9I GATC 2 cut(s) 250, 266
LmnI GCTCC 3 cut(s) 129, 677, 691
LpnPI CCDG 8 cut(s) 140, 209, 335, 429, 440, 467, 588, 642
Lsp1109I GCAGC 6 cut(s) 142, 283, 379, 382, 399, 401
MaeII ACGT 2 cut(s) 317, 626
MaeIII GTNAC 2 cut(s) 370, 403
MalI GATC 2 cut(s) 252, 268
MboI GATC 2 cut(s) 250, 266
MboII GAAGA 2 cut(s) 374, 514
MhlI GDGCHC 2 cut(s) 126, 150
MluCI AATT 5 cut(s) 436, 512, 560, 639, 652
MmeI TCCRAC 3 cut(s) 183, 213, 699
MnlI CCTC 9 cut(s) 56, 176, 192, 205, 319, 443, 471, 562, 624
MseI TTAA 2 cut(s) 21, 68
MspA1I CMGCKG 2 cut(s) 223, 392
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 4 cut(s) 280, 365, 395, 517
NcoI CCATGG 1 cut(s) 142
NdeII GATC 2 cut(s) 250, 266
NlaIII CATG 3 cut(s) 146, 179, 326
NlaIV GGNNCC 3 cut(s) 459, 573, 588
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 370
NspV TTCGAA 1 cut(s) 482
PkrI GCNGC 8 cut(s) 157, 222, 298, 391, 394, 397, 414, 490
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 459, 573, 588
PspPI GGNCC 3 cut(s) 430, 458, 587
PstNI CAGNNNCTG 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 131, 247
RsaNI GTAC 2 cut(s) 130, 246
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 21, 68
SatI GCNGC 8 cut(s) 156, 221, 297, 390, 393, 396, 413, 489
Sau3AI GATC 2 cut(s) 250, 266
Sau96I GGNCC 3 cut(s) 430, 458, 587
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 2 cut(s) 126, 150
SfuI TTCGAA 1 cut(s) 482
Sse9I AATT 5 cut(s) 436, 512, 560, 639, 652
SsiI CCGC 6 cut(s) 180, 221, 306, 344, 359, 488
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 2 cut(s) 142, 492
TaiI ACGT 2 cut(s) 320, 629
TaqI TCGA 5 cut(s) 8, 269, 332, 482, 680
TasI AATT 5 cut(s) 436, 512, 560, 639, 652
TauI GCSGC 2 cut(s) 223, 491
Tru1I TTAA 2 cut(s) 21, 68
Tru9I TTAA 2 cut(s) 21, 68
TscAI CASTG 3 cut(s) 117, 222, 234
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 6 cut(s) 155, 296, 389, 392, 395, 412
Tsp45I GTSAC 1 cut(s) 370
TspRI CASTG 3 cut(s) 117, 222, 234
XmiI GTMKAC 1 cut(s) 623
ZraI GACGTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.