Rmu_sc0014885.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014885.1
OG0000123
Physical Location & Seq
Reverse (-)
9009 .. 11889
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014885.1_g000001.1.cds

Sequence Viewer

Length: 1710 bp
atggagagcactttgggtttaaaagtgaagaatgtgcctggacgtagagtggaggagtgggttcttaatgtgattgatattttgcatagtggtcaacgtgatttgttcttcatggtcttatgggtcatatggactgaacacaacaatgcaatttggcatgacacgggctttaatgcttgcaatgcagcaaaatgggctgtgactcttctggatgattatcaaaaacaacatcccgctggtatatccaaacacgctagacctaaagctaaatggcaacttccccctactgggcgtctgaagattaatgttgatgaaaattatagaccagagtgtggtgatggtggcattagggtggtcgttcgggatgagtttggtacttgcattgcagcaatggcacattatttccctcatgttctttctgctattcacatagaagcagaggcctgtagggctggaattcttttgtctattcaccaatattggaatgcctttgaccttgaaagtgattgctcacttgtggtggctacgttgcaactgaatgtggaagatcgatctgaggtagggcgcattatcgatgacgtctctgaacgactgatcgagtttggtgcagcgatggcagcggagggagcagcgacgtctcttgtcttgtcggaggccgtagtgagcctagatgagggtggggatgcgatctacgatccattcttttacttgtgtggacgtctgctaaccaagaaaccggtggttattctgtcgttctctgcagcgatgttcgaaattcgggcttcgtcagaggtccctctgcattttctggaggtgtgggtggcggtgactggtctacgagttgccatgcgcaacgagcgggctcttacccggattggcaacttaatgggtacttttgtgagggttgatcaagtggcgctacaaaggaaggaagccacccaaaggatcaggctgatctttgatgtgcgtcaccgtgtctgggctcggcatacggtctacttcacgccagaggtctcggtggcacttgaatttcgatttgagaaatgtcgtgggatctgtaagggatgtggctttttcacccatggaggcggtaagtgtgatcagaagctggtgaaggaggcggttgtggaggagtcgggtttggttttgcagaaggtggtggctctgtcaccgtcaaatgctacggaggaaacccggtcggtgtccctcgctggtgtggtaccgccggcgtccggttgggaggatttggatctcgctcctgcttcttctgccgtgcaggttgaggaaacgcagcatgcggccgggacgaagatggccagcccttgtttttcggcgggaaatcctaatttcaaattagggttgactgccgggccgggtttgcctactggtgttgggcagaatgtcgttgggcctgcattgctgggtttgcctagccctgtgggtttgggctctggatcagctgggctggaagtaggggttgctagcctttttggacacccatcaaaggtgttgggtgtgaggaggcttcgtgaggaggattggctcgaggatgggaagcgggcaaagctttctgatggcttagtcgagatctcaattacggatggaaagctatcgaagaagaagggtagaccccgtgggcatcggaacaagcctaaggttgtctctacatctacttcaggggtggatgttggggggcagcctgctgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

569

Amino Acids

61.74

Weight (kDa)

6.97

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 582, 638, 721
Acc16I TGCGCA 1 cut(s) 851
Acc36I ACCTGC 1 cut(s) 1267
Acc65I GGTACC 1 cut(s) 1219
AccB1I GGYRCC 1 cut(s) 1219
AccB7I CCANNNNNTGG 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 859
AccI GTMKAC 3 cut(s) 835, 996, 1627
AclWI GGATC 5 cut(s) 689, 953, 1061, 1257, 1462
AcoI YGGCCR 2 cut(s) 1299, 1314
AcsI RAATTY 3 cut(s) 456, 774, 1028
AcuI CTGAAG 2 cut(s) 317, 1659
AcyI GRCGYC 5 cut(s) 292, 579, 635, 718, 1229
AfaI GTAC 3 cut(s) 376, 892, 1221
AfiI CCNNNNNNNGG 8 cut(s) 287, 288, 332, 673, 942, 979, 1232, 1504
AgeI ACCGGT 1 cut(s) 736
AgsI TTSAA 3 cut(s) 500, 1028, 1351
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 5 cut(s) 266, 1108, 1460, 1567, 1609
AluI AGCT 5 cut(s) 266, 1108, 1460, 1567, 1609
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 4 cut(s) 586, 642, 1018, 1666
AlwI GGATC 5 cut(s) 689, 953, 1061, 1257, 1462
AlwNI CAGNNNCTG 1 cut(s) 1108
Ama87I CYCGRG 1 cut(s) 1544
AoxI GGCC 6 cut(s) 441, 654, 1299, 1314, 1370, 1409
ApeKI GCWGC 8 cut(s) 185, 386, 608, 617, 629, 761, 1291, 1696
ApoI RAATTY 3 cut(s) 456, 774, 1028
AseI ATTAAT 1 cut(s) 303
AsiGI ACCGGT 1 cut(s) 736
Asp718I GGTACC 1 cut(s) 1219
AspLEI GCGC 3 cut(s) 567, 852, 919
AspS9I GGNCC 3 cut(s) 793, 1370, 1409
AsuC2I CCSGG 5 cut(s) 871, 1195, 1303, 1369, 1374
AsuHPI GGTGA 7 cut(s) 347, 464, 838, 962, 1069, 1123, 1161
AsuII TTCGAA 1 cut(s) 771
AsuNHI GCTAGC 1 cut(s) 1481
AvaI CYCGRG 1 cut(s) 1544
AvaII GGWCC 1 cut(s) 793
AxyI CCTNAGG 1 cut(s) 1653
BaeI ACNNNNGTAYC 2 cut(s) 882, 915
BalI TGGCCA 1 cut(s) 1316
BanI GGYRCC 1 cut(s) 1219
BanII GRGCYC 3 cut(s) 865, 985, 1451
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 7 cut(s) 197, 398, 620, 629, 641, 773, 1303
BccI CCATC 7 cut(s) 332, 607, 1306, 1507, 1544, 1568, 1595
BceAI ACGGC 2 cut(s) 641, 1256
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 1 cut(s) 39
BclI TGATCA 2 cut(s) 907, 1099
BcnI CCSGG 5 cut(s) 871, 1195, 1303, 1369, 1374
BcoDI GTCTC 4 cut(s) 586, 642, 1018, 1666
BfaI CTAG 4 cut(s) 255, 668, 1431, 1482
BfmI CTRYAG 2 cut(s) 445, 759
BfoI RGCGCY 1 cut(s) 920
BfuAI ACCTGC 1 cut(s) 1267
BglI GCCNNNNNGGC 1 cut(s) 449
BglII AGATCT 1 cut(s) 1587
BisI GCNGC 9 cut(s) 186, 387, 609, 618, 630, 762, 1292, 1299, 1697
BlsI GCNGC 9 cut(s) 187, 388, 610, 619, 631, 763, 1293, 1300, 1698
Bme1390I CCNGG 6 cut(s) 39, 871, 1195, 1303, 1369, 1374
Bme18I GGWCC 1 cut(s) 793
BmeT110I CYCGRG 1 cut(s) 1544
BmgT120I GGNCC 3 cut(s) 793, 1370, 1409
BmiI GGNNCC 2 cut(s) 795, 1221
BmrFI CCNGG 6 cut(s) 39, 871, 1195, 1303, 1369, 1374
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 673, 1648
BmtI GCTAGC 1 cut(s) 1485
BmuI ACTGGG 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 830
Bpu14I TTCGAA 1 cut(s) 771
BpuMI CCSGG 5 cut(s) 871, 1195, 1303, 1369, 1374
Bsa29I ATCGAT 2 cut(s) 550, 573
BsaBI GATNNNNATC 2 cut(s) 216, 1248
BsaHI GRCGYC 5 cut(s) 292, 579, 635, 718, 1229
BsaI GGTCTC 1 cut(s) 1018
BsaJI CCNNGG 2 cut(s) 1081, 1633
BsaWI WCCGGW 2 cut(s) 736, 1232
BsaXI ACNNNNNCTCC 2 cut(s) 1513, 1543
Bsc4I CCNNNNNNNGG 8 cut(s) 287, 288, 332, 673, 942, 979, 1232, 1504
Bse118I RCCGGY 2 cut(s) 736, 1225
Bse1I ACTGG 3 cut(s) 292, 835, 1390
Bse21I CCTNAGG 1 cut(s) 1653
Bse3DI GCAATG 4 cut(s) 187, 381, 396, 1415
Bse8I GATNNNNATC 2 cut(s) 216, 1248
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 2 cut(s) 550, 573
BseDI CCNNGG 2 cut(s) 1081, 1633
BseGI GGATG 8 cut(s) 217, 229, 370, 688, 1070, 1555, 1606, 1690
BseJI GATNNNNATC 2 cut(s) 216, 1248
BseLI CCNNNNNNNGG 8 cut(s) 287, 288, 332, 673, 942, 979, 1232, 1504
BseMI GCAATG 4 cut(s) 187, 381, 396, 1415
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 3 cut(s) 292, 835, 1390
BseRI GAGGAG 4 cut(s) 68, 1145, 1534, 1547
BseX3I CGGCCG 1 cut(s) 1299
BseXI GCAGC 7 cut(s) 197, 398, 620, 629, 641, 773, 1303
BseYI CCCAGC 3 cut(s) 1420, 1460, 1703
BsgI GTGCAG 2 cut(s) 627, 1295
Bsh1285I CGRYCG 2 cut(s) 1199, 1302
BshFI GGCC 6 cut(s) 443, 656, 1301, 1316, 1372, 1411
BshNI GGYRCC 1 cut(s) 1219
BshTI ACCGGT 1 cut(s) 736
BshVI ATCGAT 2 cut(s) 550, 573
BsiEI CGRYCG 2 cut(s) 1199, 1302
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 1544
BsiSI CCGG 8 cut(s) 737, 871, 1195, 1226, 1233, 1302, 1368, 1373
BslFI GGGAC 3 cut(s) 779, 1189, 1318
BslI CCNNNNNNNGG 8 cut(s) 287, 288, 332, 673, 942, 979, 1232, 1504
BsmAI GTCTC 4 cut(s) 586, 642, 1018, 1666
BsmBI CGTCTC 2 cut(s) 586, 642
BsmFI GGGAC 3 cut(s) 779, 1189, 1318
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 6 cut(s) 443, 656, 1301, 1316, 1372, 1411
Bso31I GGTCTC 1 cut(s) 1018
BsoBI CYCGRG 1 cut(s) 1544
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 4 cut(s) 11, 865, 985, 1451
Bsp19I CCATGG 1 cut(s) 1081
BspANI GGCC 6 cut(s) 443, 656, 1301, 1316, 1372, 1411
BspCNI CTCAG 1 cut(s) 547
BspDI ATCGAT 2 cut(s) 550, 573
BspLI GGNNCC 2 cut(s) 795, 1221
BspMAI CTGCAG 1 cut(s) 763
BspMI ACCTGC 1 cut(s) 1267
BspOI GCTAGC 1 cut(s) 1485
BspPI GGATC 5 cut(s) 689, 953, 1061, 1257, 1462
BspT104I TTCGAA 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 1219
BspTNI GGTCTC 1 cut(s) 1018
BsrBI CCGCTC 1 cut(s) 859
BsrDI GCAATG 4 cut(s) 187, 381, 396, 1415
BsrFI RCCGGY 2 cut(s) 736, 1225
BsrI ACTGG 3 cut(s) 292, 835, 1390
BssAI RCCGGY 2 cut(s) 736, 1225
BssECI CCNNGG 2 cut(s) 1081, 1633
BssNI GRCGYC 5 cut(s) 292, 579, 635, 718, 1229
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 974, 994, 1173
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 5 cut(s) 292, 579, 635, 718, 1229
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 9 cut(s) 178, 861, 1227, 1296, 1318, 1413, 1483, 1560, 1701
BstDEI CTNAG 3 cut(s) 555, 1579, 1653
BstDSI CCRYGG 2 cut(s) 1081, 1633
BstENI CCTNNNNNAGG 1 cut(s) 671
BstF5I GGATG 8 cut(s) 217, 229, 370, 688, 1070, 1555, 1606, 1690
BstH2I RGCGCY 1 cut(s) 920
BstHHI GCGC 3 cut(s) 567, 852, 919
BstMAI GTCTC 4 cut(s) 586, 642, 1018, 1666
BstMCI CGRYCG 2 cut(s) 1199, 1302
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 1298
BstSCI CCNGG 6 cut(s) 37, 869, 1193, 1301, 1367, 1372
BstSFI CTRYAG 2 cut(s) 445, 759
BstV1I GCAGC 7 cut(s) 197, 398, 620, 629, 641, 773, 1303
BstX2I RGATCY 3 cut(s) 1053, 1249, 1587
BstYI RGATCY 3 cut(s) 1053, 1249, 1587
BstZI CGGCCG 1 cut(s) 1299
Bsu15I ATCGAT 2 cut(s) 550, 573
Bsu36I CCTNAGG 1 cut(s) 1653
BsuRI GGCC 6 cut(s) 443, 656, 1301, 1316, 1372, 1411
BsuTUI ATCGAT 2 cut(s) 550, 573
BtgI CCRYGG 2 cut(s) 1081, 1633
BtgZI GCGATG 2 cut(s) 626, 779
BtsCI GGATG 8 cut(s) 217, 229, 370, 688, 1070, 1555, 1606, 1690
BveI ACCTGC 1 cut(s) 1267
Cac8I GCNNGC 9 cut(s) 178, 861, 1227, 1296, 1318, 1413, 1483, 1560, 1701
CaiI CAGNNNCTG 1 cut(s) 1108
CfoI GCGC 3 cut(s) 567, 852, 919
Cfr10I RCCGGY 2 cut(s) 736, 1225
Cfr13I GGNCC 3 cut(s) 793, 1370, 1409
ClaI ATCGAT 2 cut(s) 550, 573
CseI GACGC 3 cut(s) 281, 956, 1218
Csp6I GTAC 3 cut(s) 375, 891, 1220
CspAI ACCGGT 1 cut(s) 736
CviAII CATG 6 cut(s) 112, 158, 410, 847, 1082, 1295
CviQI GTAC 3 cut(s) 375, 891, 1220
DdeI CTNAG 3 cut(s) 555, 1579, 1653
DraI TTTAAA 1 cut(s) 21
EaeI YGGCCR 2 cut(s) 1299, 1314
EagI CGGCCG 1 cut(s) 1299
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 1299
Eco130I CCWWGG 1 cut(s) 1081
Eco147I AGGCCT 1 cut(s) 443
Eco24I GRGCYC 3 cut(s) 865, 985, 1451
Eco31I GGTCTC 1 cut(s) 1018
Eco47I GGWCC 1 cut(s) 793
Eco52I CGGCCG 1 cut(s) 1299
Eco57I CTGAAG 2 cut(s) 317, 1659
Eco81I CCTNAGG 1 cut(s) 1653
Eco88I CYCGRG 1 cut(s) 1544
EcoNI CCTNNNNNAGG 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 1081
EcoT38I GRGCYC 3 cut(s) 865, 985, 1451
ErhI CCWWGG 1 cut(s) 1081
Esp3I CGTCTC 2 cut(s) 586, 642
FaeI CATG 6 cut(s) 115, 161, 413, 850, 1085, 1298
FaqI GGGAC 3 cut(s) 779, 1189, 1318
FatI CATG 6 cut(s) 111, 157, 409, 846, 1081, 1294
FauI CCCGC 4 cut(s) 241, 852, 1327, 1551
FauNDI CATATG 1 cut(s) 128
FbaI TGATCA 2 cut(s) 907, 1099
FblI GTMKAC 3 cut(s) 835, 996, 1627
Fnu4HI GCNGC 9 cut(s) 186, 387, 609, 618, 630, 762, 1292, 1299, 1697
FokI GGATG 8 cut(s) 216, 224, 377, 695, 1077, 1562, 1613, 1697
FriOI GRGCYC 3 cut(s) 865, 985, 1451
Fsp4HI GCNGC 9 cut(s) 186, 387, 609, 618, 630, 762, 1292, 1299, 1697
FspBI CTAG 4 cut(s) 255, 668, 1431, 1482
FspI TGCGCA 1 cut(s) 851
GlaI GCGC 3 cut(s) 566, 851, 918
GluI GCNGC 9 cut(s) 186, 387, 609, 618, 630, 762, 1292, 1299, 1697
GsaI CCCAGC 3 cut(s) 1424, 1464, 1707
GsuI CTGGAG 1 cut(s) 830
HaeII RGCGCY 1 cut(s) 920
HaeIII GGCC 6 cut(s) 443, 656, 1301, 1316, 1372, 1411
HapII CCGG 8 cut(s) 737, 871, 1195, 1226, 1233, 1302, 1368, 1373
HgaI GACGC 3 cut(s) 281, 956, 1218
HhaI GCGC 3 cut(s) 567, 852, 919
Hin1I GRCGYC 5 cut(s) 292, 579, 635, 718, 1229
Hin1II CATG 6 cut(s) 115, 161, 413, 850, 1085, 1298
Hin6I GCGC 3 cut(s) 565, 850, 917
HinP1I GCGC 3 cut(s) 565, 850, 917
HincII GTYRAC 2 cut(s) 95, 1362
HindII GTYRAC 2 cut(s) 95, 1362
HindIII AAGCTT 1 cut(s) 1565
HinfI GANTC 2 cut(s) 202, 1133
HpaII CCGG 8 cut(s) 737, 871, 1195, 1226, 1233, 1302, 1368, 1373
HphI GGTGA 7 cut(s) 347, 464, 838, 962, 1069, 1123, 1161
Hpy166II GTNNAC 6 cut(s) 95, 716, 836, 997, 1362, 1628
Hpy188I TCNGA 8 cut(s) 297, 556, 586, 652, 790, 1104, 1573, 1644
Hpy188III TCNNGA 6 cut(s) 209, 362, 809, 1452, 1529, 1585
Hpy8I GTNNAC 6 cut(s) 95, 716, 836, 997, 1362, 1628
Hpy99I CGWCG 1 cut(s) 637
HpyAV CCTTC 4 cut(s) 922, 1108, 1147, 1615
HpyCH4III ACNGT 3 cut(s) 974, 994, 1173
HpyCH4IV ACGT 6 cut(s) 43, 97, 527, 579, 635, 718
HpyF3I CTNAG 3 cut(s) 555, 1579, 1653
HpySE526I ACGT 6 cut(s) 43, 97, 527, 579, 635, 718
Hsp92I GRCGYC 5 cut(s) 292, 579, 635, 718, 1229
Hsp92II CATG 6 cut(s) 115, 161, 413, 850, 1085, 1298
HspAI GCGC 3 cut(s) 565, 850, 917
KpnI GGTACC 1 cut(s) 1223
KroI GCCGGC 1 cut(s) 1225
KroNI GCCGGC 1 cut(s) 1227
Ksp22I TGATCA 2 cut(s) 907, 1099
LmnI GCTCC 2 cut(s) 626, 1261
Lsp1109I GCAGC 7 cut(s) 197, 398, 620, 629, 641, 773, 1303
LweI GCATC 2 cut(s) 673, 1648
MaeI CTAG 4 cut(s) 255, 668, 1431, 1482
MaeII ACGT 6 cut(s) 43, 97, 527, 579, 635, 718
MaeIII GTNAC 4 cut(s) 199, 826, 968, 1167
MbiI CCGCTC 1 cut(s) 859
MboII GAAGA 9 cut(s) 40, 100, 197, 310, 557, 1257, 1321, 1627, 1630
MflI RGATCY 3 cut(s) 1053, 1249, 1587
MhlI GDGCHC 4 cut(s) 11, 865, 985, 1451
MlsI TGGCCA 1 cut(s) 1316
MluCI AATT 8 cut(s) 150, 316, 456, 774, 1028, 1345, 1352, 1593
MluNI TGGCCA 1 cut(s) 1316
MlyI GAGTC 2 cut(s) 196, 1142
MmeI TCCRAC 1 cut(s) 630
Mox20I TGGCCA 1 cut(s) 1316
MreI CGCCGGCG 1 cut(s) 1225
MroNI GCCGGC 1 cut(s) 1225
MscI TGGCCA 1 cut(s) 1316
MseI TTAA 5 cut(s) 20, 66, 171, 303, 884
MslI CAYNNNNRTG 2 cut(s) 144, 350
Msp20I TGGCCA 1 cut(s) 1316
MspA1I CMGCKG 3 cut(s) 236, 620, 1460
MspI CCGG 8 cut(s) 737, 871, 1195, 1226, 1233, 1302, 1368, 1373
MspR9I CCNGG 6 cut(s) 39, 871, 1195, 1303, 1369, 1374
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 1 cut(s) 39
NaeI GCCGGC 1 cut(s) 1227
NciI CCSGG 5 cut(s) 871, 1195, 1303, 1369, 1374
NcoI CCATGG 1 cut(s) 1081
NdeI CATATG 1 cut(s) 128
NgoMIV GCCGGC 1 cut(s) 1225
NheI GCTAGC 1 cut(s) 1481
NlaIII CATG 6 cut(s) 115, 161, 413, 850, 1085, 1298
NlaIV GGNNCC 2 cut(s) 795, 1221
NmeAIII GCCGAG 1 cut(s) 964
NmuCI GTSAC 4 cut(s) 199, 826, 968, 1167
NsbI TGCGCA 1 cut(s) 851
NspI RCATGY 1 cut(s) 1298
NspV TTCGAA 1 cut(s) 771
PaeI GCATGC 1 cut(s) 1298
PaeR7I CTCGAG 1 cut(s) 1544
PceI AGGCCT 1 cut(s) 443
PctI GAATGC 1 cut(s) 490
PdiI GCCGGC 1 cut(s) 1227
PflMI CCANNNNNTGG 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 736
PkrI GCNGC 9 cut(s) 187, 388, 610, 619, 631, 763, 1293, 1300, 1698
PleI GAGTC 2 cut(s) 196, 1141
PpsI GAGTC 2 cut(s) 196, 1141
PpuMI RGGWCCY 1 cut(s) 793
PshBI ATTAAT 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 37
PspFI CCCAGC 3 cut(s) 1420, 1460, 1703
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 795, 1221
PspPI GGNCC 3 cut(s) 793, 1370, 1409
PspPPI RGGWCCY 1 cut(s) 793
PspXI VCTCGAGB 1 cut(s) 1544
PstI CTGCAG 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 1108
PsuI RGATCY 3 cut(s) 1053, 1249, 1587
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 3 cut(s) 376, 892, 1221
RsaNI GTAC 3 cut(s) 375, 891, 1220
RseI CAYNNNNRTG 2 cut(s) 144, 350
SaqAI TTAA 5 cut(s) 20, 66, 171, 303, 884
SatI GCNGC 9 cut(s) 186, 387, 609, 618, 630, 762, 1292, 1299, 1697
Sau96I GGNCC 3 cut(s) 793, 1370, 1409
SchI GAGTC 2 cut(s) 196, 1142
ScrFI CCNGG 6 cut(s) 39, 871, 1195, 1303, 1369, 1374
SduI GDGCHC 4 cut(s) 11, 865, 985, 1451
SfaNI GCATC 2 cut(s) 673, 1648
SfcI CTRYAG 2 cut(s) 445, 759
Sfr274I CTCGAG 1 cut(s) 1544
SfuI TTCGAA 1 cut(s) 771
SgrAI CRCCGGYG 1 cut(s) 1225
SinI GGWCC 1 cut(s) 793
SlaI CTCGAG 1 cut(s) 1544
SmiMI CAYNNNNRTG 2 cut(s) 144, 350
SmlI CTYRAG 1 cut(s) 1544
SmoI CTYRAG 1 cut(s) 1544
SphI GCATGC 1 cut(s) 1298
Sse9I AATT 8 cut(s) 150, 316, 456, 774, 1028, 1345, 1352, 1593
SseBI AGGCCT 1 cut(s) 443
SspI AATATT 1 cut(s) 479
SspMI CTAG 4 cut(s) 255, 668, 1431, 1482
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 6 cut(s) 37, 869, 1193, 1301, 1367, 1372
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 3 cut(s) 974, 994, 1173
TaiI ACGT 6 cut(s) 46, 100, 530, 582, 638, 721
TaqI TCGA 8 cut(s) 550, 573, 597, 771, 1033, 1545, 1584, 1613
TasI AATT 8 cut(s) 150, 316, 456, 774, 1028, 1345, 1352, 1593
TauI GCSGC 1 cut(s) 1301
Tru1I TTAA 5 cut(s) 20, 66, 171, 303, 884
Tru9I TTAA 5 cut(s) 20, 66, 171, 303, 884
TseFI GTSAC 4 cut(s) 199, 826, 968, 1167
TseI GCWGC 8 cut(s) 185, 386, 608, 617, 629, 761, 1291, 1696
Tsp45I GTSAC 4 cut(s) 199, 826, 968, 1167
TspDTI ATGAA 2 cut(s) 100, 327
TspGWI ACGGA 2 cut(s) 1199, 1613
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 793
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 671
XapI RAATTY 3 cut(s) 456, 774, 1028
XceI RCATGY 1 cut(s) 1298
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XhoI CTCGAG 1 cut(s) 1544
XmiI GTMKAC 3 cut(s) 835, 996, 1627
XspI CTAG 4 cut(s) 255, 668, 1431, 1482
ZraI GACGTC 3 cut(s) 580, 636, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.