Rroxscaffold_2G00146610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000123
Physical Location & Seq
Forward (+)
84479521 .. 84483097
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146610.1

Sequence Viewer

Length: 330 bp
ATGAGGCATCGGGAGAACGACTCTCCCACATCGAAGATAGGGAAACTCCTTTCTCATGCTAGAGTATTAAAACATCGGTACAACCACCTTTTACGGTGTTGGGTGTGCGACGACTCACGAGGAGGATTGGGTCGAGGACGGGAAACGACGAAGCTTGCCGATGGCTTAGTCGAGGTTCCCGTTATTGATGGGAAGATTCCGAAGAAGAAGGGTAGGCCCCATGGTCATCGGAATAAACCTAAGACCGCACCTACTTCTACCGTAGTGGGCCCGGTCGAGAGGTCATGGAGAAGGATACCTTATCCCAAGAGGGTTAGGGTTGCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.34

Weight (kDa)

11.15

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AfaI GTAC 1 cut(s) 80
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AoxI GGCC 2 cut(s) 215, 268
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 216, 268, 269
AsuC2I CCSGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BauI CACGAG 1 cut(s) 117
BccI CCATC 2 cut(s) 155, 182
BciVI GTATCC 1 cut(s) 288
BcnI CCSGG 1 cut(s) 272
BfaI CTAG 1 cut(s) 60
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 216, 268, 269
BmiI GGNNCC 3 cut(s) 177, 218, 270
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 16
BplI GAGNNNNNCTC 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 217, 270
BsiEI CGRYCG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 272
BsnI GGCC 2 cut(s) 217, 270
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 1 cut(s) 246
BspANI GGCC 2 cut(s) 217, 270
BspLI GGNNCC 3 cut(s) 177, 218, 270
BssECI CCNNGG 1 cut(s) 220
BssSI CACGAG 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 96, 262
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 166, 240
BstDSI CCRYGG 1 cut(s) 220
BstMCI CGRYCG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 272
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 217, 270
BtgI CCRYGG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 216, 268, 269
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 56, 221, 285
CviJI RGCY 5 cut(s) 154, 165, 217, 270, 326
CviKI_1 RGCY 5 cut(s) 154, 165, 217, 270, 326
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 166, 240
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 3 cut(s) 59, 224, 288
FaiI YATR 3 cut(s) 57, 222, 286
FalI AAGNNNNNCTT 2 cut(s) 283, 315
FatI CATG 3 cut(s) 55, 220, 284
Fnu4HI GCNGC 1 cut(s) 324
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 217, 270
HapII CCGG 1 cut(s) 272
Hin1II CATG 3 cut(s) 59, 224, 288
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 3 cut(s) 20, 113, 196
HpaII CCGG 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 201, 231
Hpy188III TCNNGA 3 cut(s) 11, 117, 277
Hpy99I CGWCG 2 cut(s) 113, 151
HpyAV CCTTC 2 cut(s) 202, 285
HpyCH4III ACNGT 2 cut(s) 96, 262
HpyCH4V TGCA 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 166, 240
Hsp92II CATG 3 cut(s) 59, 224, 288
LpnPI CCDG 1 cut(s) 285
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 60
MboII GAAGA 4 cut(s) 46, 205, 214, 217
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 2 cut(s) 14, 107
MnlI CCTC 6 cut(s) 113, 116, 128, 166, 273, 303
MseI TTAA 1 cut(s) 68
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 272
NciI CCSGG 1 cut(s) 272
NcoI CCATGG 1 cut(s) 220
NlaIII CATG 3 cut(s) 59, 224, 288
NlaIV GGNNCC 3 cut(s) 177, 218, 270
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 2 cut(s) 14, 107
PpsI GAGTC 2 cut(s) 14, 107
PspN4I GGNNCC 3 cut(s) 177, 218, 270
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 3 cut(s) 216, 268, 269
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 324
Sau96I GGNCC 3 cut(s) 216, 268, 269
SchI GAGTC 2 cut(s) 14, 107
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 272
SetI ASST 7 cut(s) 90, 156, 177, 241, 253, 284, 301
SfaNI GCATC 1 cut(s) 16
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 96, 262
TaqI TCGA 4 cut(s) 32, 133, 171, 276
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseI GCWGC 1 cut(s) 323
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.