Rmu_co8038194.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8038194.1
OG0000123
Physical Location & Seq
Forward (+)
124 .. 551
428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8038194.1_g000001.1.cds

Sequence Viewer

Length: 422 bp
atggtggcgctacaacagaaagatcctatccaaaggatttgtctgatccacgacgtccgcctgaggatatgggctcgtcgtacctattgcttttcatcgaaggtttcggtgatgttggaattcaaatatgaaaaatgtcatggtatctgcacggagtgtggtttctttgggcacggtggtggcagttgtgacagaggtttgacgaaggaggttccggcgttgaccgcgacggtcatggagccagtgatggttggattagcgtcggaacatgttggaatagagtcggagcatactgagctggggttggaacttggagctgaagctgggttggtggtgtttgcgtcggagcctgctgtttcggtgattctggattctttggcgggaaaccctaatttcaaattagggttgaccgctgggttgga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.08

Weight (kDa)

5.69

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccII CGCG 1 cut(s) 227
AciI CCGC 4 cut(s) 58, 225, 380, 411
AclWI GGATC 2 cut(s) 17, 40
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 156
AfaI GTAC 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 2 cut(s) 124, 397
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 3 cut(s) 298, 317, 323
AluI AGCT 3 cut(s) 298, 317, 323
AlwI GGATC 2 cut(s) 17, 40
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 121, 373
AxyI CCTNAGG 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 76
BccI CCATC 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 11
BmiI GGNNCC 3 cut(s) 213, 240, 348
BsaHI GRCGYC 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 242
Bse21I CCTNAGG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 53, 285
BseNI ACTGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 174
BseYI CCCAGC 3 cut(s) 298, 323, 413
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 76, 174
Bsp143I GATC 2 cut(s) 22, 45
BspACI CCGC 4 cut(s) 58, 225, 380, 411
BspCNI CTCAG 2 cut(s) 54, 286
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 3 cut(s) 213, 240, 348
BspPI GGATC 2 cut(s) 17, 40
BsrI ACTGG 1 cut(s) 242
BssMI GATC 2 cut(s) 22, 45
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 176, 232
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 62, 294
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 25, 48
BstMBI GATC 2 cut(s) 22, 45
BstMWI GCNNNNNNNGC 2 cut(s) 224, 295
BstNSI RCATGY 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 174
BstUI CGCG 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 1 cut(s) 10
CseI GACGC 2 cut(s) 249, 330
Csp6I GTAC 1 cut(s) 81
CviAII CATG 3 cut(s) 140, 235, 269
CviJI RGCY 6 cut(s) 74, 241, 298, 317, 323, 349
CviKI_1 RGCY 6 cut(s) 74, 241, 298, 317, 323, 349
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 2 cut(s) 62, 294
DpnI GATC 2 cut(s) 24, 47
DpnII GATC 2 cut(s) 22, 45
DraIII CACNNNGTG 1 cut(s) 156
EciI GGCGGA 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 3 cut(s) 143, 238, 272
FaiI YATR 6 cut(s) 70, 129, 141, 236, 270, 291
FatI CATG 3 cut(s) 139, 234, 268
FauI CCCGC 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 76
GlaI GCGC 1 cut(s) 9
GsaI CCCAGC 3 cut(s) 302, 327, 417
HaeII RGCGCY 1 cut(s) 11
HapII CCGG 1 cut(s) 215
HgaI GACGC 2 cut(s) 249, 330
HhaI GCGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 3 cut(s) 143, 238, 272
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 2 cut(s) 222, 408
HindII GTYRAC 2 cut(s) 222, 408
HinfI GANTC 3 cut(s) 281, 364, 371
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 121, 373
Hpy166II GTNNAC 2 cut(s) 222, 408
Hpy188I TCNGA 4 cut(s) 45, 265, 286, 346
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 222, 408
Hpy99I CGWCG 5 cut(s) 56, 81, 232, 265, 346
HpyAV CCTTC 2 cut(s) 94, 199
HpyCH4III ACNGT 2 cut(s) 176, 232
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 295
HpyF3I CTNAG 2 cut(s) 62, 294
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 3 cut(s) 143, 238, 272
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 22, 45
LmnI GCTCC 4 cut(s) 238, 286, 314, 346
LpnPI CCDG 8 cut(s) 74, 228, 255, 284, 309, 353, 363, 399
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 24, 47
MboI GATC 2 cut(s) 22, 45
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 2 cut(s) 76, 174
MluCI AATT 3 cut(s) 119, 391, 398
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 8 cut(s) 96, 232, 243, 253, 264, 285, 324, 399
MnlI CCTC 3 cut(s) 57, 188, 202
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 224, 295
NdeII GATC 2 cut(s) 22, 45
NlaIII CATG 3 cut(s) 143, 238, 272
NlaIV GGNNCC 3 cut(s) 213, 240, 348
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 177
PciI ACATGT 1 cut(s) 268
PfeI GAWTC 2 cut(s) 364, 371
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PscI ACATGT 1 cut(s) 268
PspFI CCCAGC 3 cut(s) 298, 323, 413
PspN4I GGNNCC 3 cut(s) 213, 240, 348
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 177
Sau3AI GATC 2 cut(s) 22, 45
SchI GAGTC 1 cut(s) 290
SduI GDGCHC 2 cut(s) 76, 174
SetI ASST 8 cut(s) 57, 86, 105, 199, 213, 300, 319, 325
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 3 cut(s) 119, 391, 398
SsiI CCGC 4 cut(s) 58, 225, 380, 411
TaaI ACNGT 2 cut(s) 176, 232
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 98
TasI AATT 3 cut(s) 119, 391, 398
TfiI GAWTC 2 cut(s) 364, 371
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 84, 144
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 249
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 272
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.