Rmu_co8416111.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416111.1
OG0000123
Physical Location & Seq
Reverse (-)
492 .. 1367
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416111.1_g000001.1.cds

Sequence Viewer

Length: 768 bp
ctgtcgttctcgacggtgatctccaacgtttggggattgagagagagagttctgatcttgcaggaggagcaggatatcttcgtttttcaattcaaggatagggaggtgaagaatcgggttctttcaggaggtccatggttttacaacaactctatgttgctgctggcagattatgacggcgtttcagctcttgaggaggcaccgctgcatcttcttgaagtttgggtggcggtgaaggggctgcgcatagctatgcgcaatgagaaggcgctgtccttgattggtagtgcgctggggactgttgttcgggttgatcagggagcggtgcagcgaaaggacatgattcaaaggatctgtgtcatccatgatgttcgccggcggatctgggcgcagcggcagttcgacttttcgccggtggtctccgtgttggtagaacttcaatacgagaatctggaggaggatcgtgggttggtttcggcgcctaattcaacggcttttgtggcggcggtcagtgggatgggaatgacccatacgacgtcgacagggttgtcgatgctgaaggatgtagtgacgatggatatggaccatacggtggagggatcggtggctgctgcgagtacaacgttaattcttcaggaaaatctggcgggaaaccccaactttgaattagggttgaccgctgggttgactgggccagggctgcaggtgcctgtgccgtgcctcaatgctgatgggacaaaggaggactctgttactgggctaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

255

Amino Acids

27.83

Weight (kDa)

4.96

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 694
AasI GACNNNNNNGTC 1 cut(s) 547
AatII GACGTC 1 cut(s) 539
Acc16I TGCGCA 2 cut(s) 245, 257
Acc36I ACCTGC 1 cut(s) 694
AccB1I GGYRCC 3 cut(s) 199, 478, 706
AccB7I CCANNNNNTGG 2 cut(s) 30, 592
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 539
AciI CCGC 9 cut(s) 203, 230, 323, 379, 394, 503, 506, 647, 678
AclI AACGTT 2 cut(s) 27, 623
AclWI GGATC 4 cut(s) 359, 389, 468, 607
AcuI CTGAAG 2 cut(s) 578, 617
AcyI GRCGYC 2 cut(s) 479, 536
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 2 cut(s) 30, 592
AgsI TTSAA 7 cut(s) 89, 94, 218, 347, 440, 489, 665
AjnI CCWGG 1 cut(s) 694
AluBI AGCT 2 cut(s) 188, 251
AluI AGCT 2 cut(s) 188, 251
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 4 cut(s) 359, 389, 468, 607
AoxI GGCC 1 cut(s) 692
ApeKI GCWGC 8 cut(s) 160, 205, 241, 328, 391, 608, 611, 700
AspLEI GCGC 6 cut(s) 246, 258, 271, 292, 391, 481
AspS9I GGNCC 3 cut(s) 131, 583, 692
AsuHPI GGTGA 3 cut(s) 28, 118, 244
AvaII GGWCC 2 cut(s) 131, 583
BanI GGYRCC 3 cut(s) 199, 478, 706
BbvI GCAGC 8 cut(s) 147, 192, 228, 340, 403, 595, 598, 687
BccI CCATC 3 cut(s) 511, 568, 725
BceAI ACGGC 3 cut(s) 193, 507, 700
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 1 cut(s) 761
BfmI CTRYAG 1 cut(s) 701
BfoI RGCGCY 2 cut(s) 272, 482
BfuAI ACCTGC 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 2 cut(s) 131, 583
BmgT120I GGNCC 3 cut(s) 131, 583, 692
BmiI GGNNCC 3 cut(s) 201, 480, 708
BmrFI CCNGG 1 cut(s) 696
BmrI ACTGGG 2 cut(s) 699, 765
BmsI GCATC 2 cut(s) 217, 543
BmuI ACTGGG 2 cut(s) 699, 765
BpmI CTGGAG 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 479, 536
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 134, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 592
Bse118I RCCGGY 2 cut(s) 375, 412
Bse1I ACTGG 2 cut(s) 694, 760
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 134, 695
BseGI GGATG 3 cut(s) 360, 522, 568
BseLI CCNNNNNNNGG 2 cut(s) 30, 592
BseMI GCAATG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 694, 760
BseRI GAGGAG 3 cut(s) 80, 209, 470
BseXI GCAGC 8 cut(s) 147, 192, 228, 340, 403, 595, 598, 687
BseYI CCCAGC 2 cut(s) 292, 680
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 694
BshNI GGYRCC 3 cut(s) 199, 478, 706
BsiSI CCGG 2 cut(s) 376, 413
BslFI GGGAC 2 cut(s) 310, 748
BslI CCNNNNNNNGG 2 cut(s) 30, 592
BsmAI GTCTC 1 cut(s) 424
BsmFI GGGAC 2 cut(s) 310, 748
BsnI GGCC 1 cut(s) 694
Bso31I GGTCTC 1 cut(s) 424
Bsp143I GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 9 cut(s) 203, 230, 323, 379, 394, 503, 506, 647, 678
BspANI GGCC 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 201, 480, 708
BspMAI CTGCAG 1 cut(s) 705
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 4 cut(s) 359, 389, 468, 607
BspT107I GGYRCC 3 cut(s) 199, 478, 706
BspTNI GGTCTC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 265
BsrFI RCCGGY 2 cut(s) 375, 412
BsrI ACTGG 2 cut(s) 694, 760
BssAI RCCGGY 2 cut(s) 375, 412
BssECI CCNNGG 2 cut(s) 134, 695
BssMI GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
BssNI GRCGYC 2 cut(s) 479, 536
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 3 cut(s) 16, 301, 592
BstACI GRCGYC 2 cut(s) 479, 536
BstC8I GCNNGC 2 cut(s) 165, 377
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 360, 522, 568
BstH2I RGCGCY 2 cut(s) 272, 482
BstHHI GCGC 6 cut(s) 246, 258, 271, 292, 391, 481
BstKTI GATC 7 cut(s) 21, 57, 316, 354, 384, 463, 602
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
BstMWI GCNNNNNNNGC 4 cut(s) 67, 500, 700, 706
BstNI CCWGG 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 701
BstV1I GCAGC 8 cut(s) 147, 192, 228, 340, 403, 595, 598, 687
BstX2I RGATCY 2 cut(s) 351, 381
BstYI RGATCY 2 cut(s) 351, 381
BsuRI GGCC 1 cut(s) 694
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 3 cut(s) 360, 522, 568
BtsIMutI CAGTG 1 cut(s) 517
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 2 cut(s) 165, 377
CfoI GCGC 6 cut(s) 246, 258, 271, 292, 391, 481
Cfr10I RCCGGY 2 cut(s) 375, 412
Cfr13I GGNCC 3 cut(s) 131, 583, 692
Csp6I GTAC 1 cut(s) 618
CviAII CATG 3 cut(s) 135, 340, 365
CviJI RGCY 8 cut(s) 188, 241, 251, 494, 608, 694, 700, 760
CviKI_1 RGCY 8 cut(s) 188, 241, 251, 494, 608, 694, 700, 760
CviQI GTAC 1 cut(s) 618
DinI GGCGCC 1 cut(s) 480
DpnI GATC 7 cut(s) 20, 56, 315, 353, 383, 462, 601
DpnII GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
DrdI GACNNNNNNGTC 1 cut(s) 547
DseDI GACNNNNNNGTC 1 cut(s) 547
EciI GGCGGA 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 131, 583
Eco57I CTGAAG 2 cut(s) 578, 617
EcoRII CCWGG 1 cut(s) 694
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 134
EgeI GGCGCC 1 cut(s) 480
EheI GGCGCC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 3 cut(s) 138, 343, 368
FaqI GGGAC 2 cut(s) 310, 748
FatI CATG 3 cut(s) 134, 339, 364
FauI CCCGC 1 cut(s) 640
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 539
FokI GGATG 3 cut(s) 347, 529, 575
FspBI CTAG 1 cut(s) 761
FspI TGCGCA 2 cut(s) 245, 257
GlaI GCGC 6 cut(s) 245, 257, 270, 291, 390, 480
GsaI CCCAGC 2 cut(s) 296, 684
GsuI CTGGAG 1 cut(s) 473
HaeII RGCGCY 2 cut(s) 272, 482
HaeIII GGCC 1 cut(s) 694
HapII CCGG 2 cut(s) 376, 413
HhaI GCGC 6 cut(s) 246, 258, 271, 292, 391, 481
Hin1I GRCGYC 2 cut(s) 479, 536
Hin1II CATG 3 cut(s) 138, 343, 368
Hin6I GCGC 6 cut(s) 244, 256, 269, 290, 389, 479
HinP1I GCGC 6 cut(s) 244, 256, 269, 290, 389, 479
HincII GTYRAC 3 cut(s) 540, 675, 687
HindII GTYRAC 3 cut(s) 540, 675, 687
HinfI GANTC 4 cut(s) 112, 343, 448, 746
HpaII CCGG 2 cut(s) 376, 413
HphI GGTGA 3 cut(s) 28, 118, 244
Hpy166II GTNNAC 3 cut(s) 540, 675, 687
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 6 cut(s) 10, 126, 191, 215, 452, 635
Hpy8I GTNNAC 3 cut(s) 540, 675, 687
Hpy99I CGWCG 3 cut(s) 16, 538, 541
HpyAV CCTTC 3 cut(s) 229, 259, 553
HpyCH4III ACNGT 3 cut(s) 16, 301, 592
HpyCH4IV ACGT 3 cut(s) 27, 536, 623
HpyCH4V TGCA 4 cut(s) 61, 208, 328, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 500, 700, 706
HpySE526I ACGT 3 cut(s) 27, 536, 623
Hsp92I GRCGYC 2 cut(s) 479, 536
Hsp92II CATG 3 cut(s) 138, 343, 368
HspAI GCGC 6 cut(s) 244, 256, 269, 290, 389, 479
KasI GGCGCC 1 cut(s) 478
KroI GCCGGC 1 cut(s) 375
KroNI GCCGGC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
LmnI GCTCC 2 cut(s) 67, 320
Lsp1109I GCAGC 8 cut(s) 147, 192, 228, 340, 403, 595, 598, 687
LweI GCATC 2 cut(s) 217, 543
MaeI CTAG 1 cut(s) 761
MaeII ACGT 3 cut(s) 27, 536, 623
MaeIII GTNAC 2 cut(s) 568, 751
MalI GATC 7 cut(s) 20, 56, 315, 353, 383, 462, 601
MbiI CCGCTC 1 cut(s) 323
MboI GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
MboII GAAGA 4 cut(s) 70, 121, 203, 623
MflI RGATCY 2 cut(s) 351, 381
MluCI AATT 4 cut(s) 89, 484, 627, 665
Mly113I GGCGCC 1 cut(s) 479
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 48
MreI CGCCGGCG 1 cut(s) 375
MroNI GCCGGC 1 cut(s) 375
MseI TTAA 1 cut(s) 626
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 3 cut(s) 205, 394, 680
MspI CCGG 2 cut(s) 376, 413
MspR9I CCNGG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 4 cut(s) 67, 500, 700, 706
NaeI GCCGGC 1 cut(s) 377
NarI GGCGCC 1 cut(s) 479
NcoI CCATGG 1 cut(s) 134
NdeII GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
NgoMIV GCCGGC 1 cut(s) 375
NlaIII CATG 3 cut(s) 138, 343, 368
NlaIV GGNNCC 3 cut(s) 201, 480, 708
NmuCI GTSAC 1 cut(s) 568
NsbI TGCGCA 2 cut(s) 245, 257
PaqCI CACCTGC 1 cut(s) 694
PdiI GCCGGC 1 cut(s) 377
PfeI GAWTC 3 cut(s) 112, 343, 448
PflMI CCANNNNNTGG 2 cut(s) 30, 592
PleI GAGTC 1 cut(s) 740
PluTI GGCGCC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 740
Psp1406I AACGTT 2 cut(s) 27, 623
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 2 cut(s) 292, 680
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 201, 480, 708
PspPI GGNCC 3 cut(s) 131, 583, 692
PstI CTGCAG 1 cut(s) 705
PsuI RGATCY 2 cut(s) 351, 381
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
RseI CAYNNNNRTG 1 cut(s) 251
SalI GTCGAC 1 cut(s) 538
SaqAI TTAA 1 cut(s) 626
Sau3AI GATC 7 cut(s) 18, 54, 313, 351, 381, 460, 599
Sau96I GGNCC 3 cut(s) 131, 583, 692
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 1 cut(s) 696
SetI ASST 9 cut(s) 30, 108, 133, 190, 253, 539, 626, 708, 766
SfaNI GCATC 2 cut(s) 217, 543
SfcI CTRYAG 1 cut(s) 701
SfoI GGCGCC 1 cut(s) 480
SgrAI CRCCGGYG 2 cut(s) 375, 412
SinI GGWCC 2 cut(s) 131, 583
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 89, 484, 627, 665
SsiI CCGC 9 cut(s) 203, 230, 323, 379, 394, 503, 506, 647, 678
SspDI GGCGCC 1 cut(s) 478
SspMI CTAG 1 cut(s) 761
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 3 cut(s) 16, 301, 592
TaiI ACGT 3 cut(s) 30, 539, 626
TaqI TCGA 4 cut(s) 11, 402, 539, 551
TasI AATT 4 cut(s) 89, 484, 627, 665
TatI WGTACW 1 cut(s) 617
TauI GCSGC 2 cut(s) 397, 506
TfiI GAWTC 3 cut(s) 112, 343, 448
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 8 cut(s) 160, 205, 241, 328, 391, 608, 611, 700
Tsp45I GTSAC 1 cut(s) 568
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 2 cut(s) 30, 592
VpaK11BI GGWCC 2 cut(s) 131, 583
XmiI GTMKAC 1 cut(s) 539
XspI CTAG 1 cut(s) 761
ZraI GACGTC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.