Rmu_sc0001662.1_g000001

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001662.1
OG0000123
Physical Location & Seq
Forward (+)
6651 .. 8009
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001662.1_g000001.1.cds

Sequence Viewer

Length: 1359 bp
ctgatcgagcatggcgggggaggaggctactgtgcatttggttgggggcgaggaagcaatccaagatccttttttctatgtttgtggccgattgctttcccagaaacaagtcttcctaccgtcgttttcggcggcgatttccgacatctgggggtgttgatccgtgaggagggagaagggatctatgtcttccagttcaaggaacaagagacgaaggatcacgtcctcaatggtggaccatggttcttcaacaattcgatgcttttcttggcggattatgatggtatccgggatctggcagaggttccgttgaattctatggcggtttgggttgcagtgagagggatgcgcatggctatgcgcaatgatcgtgcactaaccctgcttgggaacaaattgggggtatttgtgcggtatgatcaaggggcgttgcagagaaaagatcccgtacaacgagttcggattgtgcacgacgttcgccggctcatatgggctcgacgtacgtactccttcttggtggcggtggaggtcgaactcgaactgaggtatgagaaatgccacggtatatgcaggggctatgcttttttcgaacatggcatgggtgactacgatggtatgctgacagcaataatggctttggggaacactgctcccccggtggaggcagcgatggtggccgtcgaatggcgtggagatggggtgtccagctggtctgaggaggtgccggcactcggaatggctcaggtttggacggaaggtagggaggctaatggctcagtggaggaacttgggtctgggtctactgctgctttcttagagggaaaccctagtttgaaattagggctctctacagggccagtttgcagcgggcctgggtctgggagggaattagctgtgggtccggatcttgggcttttaggattgggggttgtaggtggactgttggggtctgagatggctgtgggctcggagctaaggcctttatcggaggtggcatatagattggtggggcgtgatgctgggcctacatctgctattgggcctgctgcagcagaaagcacagttctgggggtgcgcaaatggtgccaaggtgagtggagcttggagaggaggttcaagcctagcttggcagtgatagctcgtgaatttcatcttggtgaccttgtggatgtcctggttactattgagaagttcccgaagaagaaggatctccttaagggctgtaagaacaaacccaaggttcgtgatggagaatttggtagcaggaagaccaacctgaggccgaggttgttagatgctgaggactctgatgcaggtactaactccgaccctacggggacgaagaaagaatttgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

452

Amino Acids

49.24

Weight (kDa)

6.09

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 350, 362, 1076
Acc36I ACCTGC 1 cut(s) 1304
AccB1I GGYRCC 2 cut(s) 721, 1083
AccI GTMKAC 1 cut(s) 800
AccIII TCCGGA 1 cut(s) 901
AciI CCGC 7 cut(s) 15, 132, 272, 323, 412, 521, 867
AclWI GGATC 8 cut(s) 60, 154, 188, 225, 300, 437, 912, 1215
AcoI YGGCCR 2 cut(s) 86, 675
AcsI RAATTY 4 cut(s) 313, 1145, 1253, 1349
AfaI GTAC 4 cut(s) 450, 502, 506, 1318
AflII CTTAAG 1 cut(s) 1214
AgsI TTSAA 5 cut(s) 199, 250, 313, 835, 1117
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 2 cut(s) 871, 1173
AjuI GAANNNNNNNTTGG 2 cut(s) 1137, 1169
AloI GAACNNNNNNTCC 2 cut(s) 1097, 1129
AluBI AGCT 6 cut(s) 708, 893, 973, 1101, 1125, 1139
AluI AGCT 6 cut(s) 708, 893, 973, 1101, 1125, 1139
Alw21I GWGCWC 2 cut(s) 376, 471
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 2 cut(s) 372, 467
AlwI GGATC 8 cut(s) 60, 154, 188, 225, 300, 437, 912, 1215
Aor13HI TCCGGA 1 cut(s) 901
AoxI GGCC 8 cut(s) 86, 675, 854, 869, 977, 1022, 1040, 1280
ApaLI GTGCAC 2 cut(s) 372, 467
ApeKI GCWGC 5 cut(s) 665, 806, 864, 1046, 1049
ApoI RAATTY 4 cut(s) 313, 1145, 1253, 1349
AspLEI GCGC 3 cut(s) 351, 363, 1077
AspS9I GGNCC 6 cut(s) 236, 854, 869, 899, 1022, 1040
AsuC2I CCSGG 2 cut(s) 290, 656
AsuHPI GGTGA 3 cut(s) 614, 1103, 1169
AsuII TTCGAA 1 cut(s) 588
AvaII GGWCC 2 cut(s) 236, 899
AxyI CCTNAGG 1 cut(s) 1277
BaeGI GKGCMC 2 cut(s) 376, 471
BanI GGYRCC 2 cut(s) 721, 1083
BanII GRGCYC 3 cut(s) 496, 846, 968
BauI CACGAG 1 cut(s) 1140
BbsI GAAGAC 3 cut(s) 104, 181, 1274
Bbv12I GWGCWC 2 cut(s) 376, 471
BbvCI CCTCAGC 1 cut(s) 1299
BbvI GCAGC 5 cut(s) 677, 793, 876, 1033, 1061
BccI CCATC 6 cut(s) 275, 605, 664, 689, 949, 1241
BceAI ACGGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 873, 1175
BciVI GTATCC 1 cut(s) 296
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 2 cut(s) 290, 656
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 828, 1122
BfmI CTRYAG 2 cut(s) 849, 1047
BfrI CTTAAG 1 cut(s) 1214
BfuAI ACCTGC 1 cut(s) 1304
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 6 cut(s) 133, 666, 807, 865, 1047, 1050
BlsI GCNGC 6 cut(s) 134, 667, 808, 866, 1048, 1051
Bme1390I CCNGG 4 cut(s) 290, 656, 873, 1175
Bme18I GGWCC 2 cut(s) 236, 899
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 6 cut(s) 236, 854, 869, 899, 1022, 1040
BmiI GGNNCC 4 cut(s) 306, 723, 900, 1085
BmrFI CCNGG 4 cut(s) 290, 656, 873, 1175
BmsI GCATC 5 cut(s) 249, 336, 1006, 1285, 1300
BpiI GAAGAC 3 cut(s) 104, 181, 1274
Bpu10I CCTNAGC 3 cut(s) 741, 974, 1299
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 2 cut(s) 290, 656
BsaAI YACGTR 1 cut(s) 504
BsaJI CCNNGG 7 cut(s) 239, 559, 654, 872, 1087, 1236, 1283
BsaWI WCCGGW 1 cut(s) 901
BsaXI ACNNNNNCTCC 4 cut(s) 684, 714, 1097, 1127
Bse118I RCCGGY 2 cut(s) 480, 724
Bse1I ACTGG 2 cut(s) 193, 857
Bse21I CCTNAGG 1 cut(s) 1277
Bse3DI GCAATG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 901
BseBI CCWGG 2 cut(s) 873, 1175
BseDI CCNNGG 7 cut(s) 239, 559, 654, 872, 1087, 1236, 1283
BseGI GGATG 2 cut(s) 351, 1174
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 7 cut(s) 533, 705, 755, 789, 942, 1268, 1290
BseNI ACTGG 2 cut(s) 193, 857
BseRI GAGGAG 4 cut(s) 36, 182, 731, 1123
BseSI GKGCMC 2 cut(s) 376, 471
BseXI GCAGC 5 cut(s) 677, 793, 876, 1033, 1061
BseYI CCCAGC 1 cut(s) 1019
BshFI GGCC 8 cut(s) 88, 677, 856, 871, 979, 1024, 1042, 1282
BshNI GGYRCC 2 cut(s) 721, 1083
BsiHKAI GWGCWC 2 cut(s) 376, 471
BsiSI CCGG 5 cut(s) 289, 481, 656, 725, 902
BsiWI CGTACG 1 cut(s) 500
BslFI GGGAC 1 cut(s) 1351
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 1351
BsnI GGCC 8 cut(s) 88, 677, 856, 871, 979, 1024, 1042, 1282
Bsp119I TTCGAA 1 cut(s) 588
Bsp1286I GDGCHC 5 cut(s) 376, 471, 496, 846, 968
Bsp13I TCCGGA 1 cut(s) 901
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 7 cut(s) 15, 132, 272, 323, 412, 521, 867
BspANI GGCC 8 cut(s) 88, 677, 856, 871, 979, 1024, 1042, 1282
BspCNI CTCAG 7 cut(s) 534, 706, 754, 788, 943, 1269, 1291
BspEI TCCGGA 1 cut(s) 901
BspLI GGNNCC 4 cut(s) 306, 723, 900, 1085
BspMAI CTGCAG 1 cut(s) 1051
BspMI ACCTGC 1 cut(s) 1304
BspPI GGATC 8 cut(s) 60, 154, 188, 225, 300, 437, 912, 1215
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 2 cut(s) 721, 1083
BspTI CTTAAG 1 cut(s) 1214
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 2 cut(s) 480, 724
BsrI ACTGG 2 cut(s) 193, 857
BssAI RCCGGY 2 cut(s) 480, 724
BssECI CCNNGG 7 cut(s) 239, 559, 654, 872, 1087, 1236, 1283
BssSI CACGAG 1 cut(s) 1140
BssT1I CCWWGG 3 cut(s) 239, 1087, 1236
Bst2BI CACGAG 1 cut(s) 1140
Bst2UI CCWGG 2 cut(s) 873, 1175
Bst4CI ACNGT 5 cut(s) 32, 121, 563, 942, 1063
BstAFI CTTAAG 1 cut(s) 1214
BstAPI GCANNNNNTGC 1 cut(s) 1083
BstBAI YACGTR 1 cut(s) 504
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 4 cut(s) 482, 726, 869, 1044
BstDEI CTNAG 9 cut(s) 542, 714, 741, 775, 814, 951, 974, 1277, 1299
BstDSI CCRYGG 2 cut(s) 239, 559
BstEII GGTNACC 1 cut(s) 1157
BstF5I GGATG 2 cut(s) 351, 1174
BstHHI GCGC 3 cut(s) 351, 363, 1077
BstMAI GTCTC 1 cut(s) 203
BstMWI GCNNNNNNNGC 4 cut(s) 632, 674, 1083, 1136
BstNI CCWGG 2 cut(s) 873, 1175
BstPI GGTNACC 1 cut(s) 1157
BstSCI CCNGG 4 cut(s) 288, 654, 871, 1173
BstSFI CTRYAG 2 cut(s) 849, 1047
BstSLI GKGCMC 2 cut(s) 376, 471
BstSNI TACGTA 1 cut(s) 504
BstV1I GCAGC 5 cut(s) 677, 793, 876, 1033, 1061
BstV2I GAAGAC 3 cut(s) 104, 181, 1274
BstX2I RGATCY 6 cut(s) 65, 180, 292, 442, 904, 1207
BstYI RGATCY 6 cut(s) 65, 180, 292, 442, 904, 1207
Bsu36I CCTNAGG 1 cut(s) 1277
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 8 cut(s) 88, 677, 856, 871, 979, 1024, 1042, 1282
BtgI CCRYGG 2 cut(s) 239, 559
BtgZI GCGATG 1 cut(s) 683
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 2 cut(s) 351, 1174
BtsI GCAGTG 3 cut(s) 342, 645, 1137
BtsIMutI CAGTG 4 cut(s) 342, 645, 783, 1137
BveI ACCTGC 1 cut(s) 1304
Cac8I GCNNGC 4 cut(s) 482, 726, 869, 1044
CfoI GCGC 3 cut(s) 351, 363, 1077
Cfr10I RCCGGY 2 cut(s) 480, 724
Cfr13I GGNCC 6 cut(s) 236, 854, 869, 899, 1022, 1040
Csp6I GTAC 4 cut(s) 449, 501, 505, 1317
CspCI CAANNNNNGTGG 2 cut(s) 1076, 1111
CviAII CATG 5 cut(s) 11, 240, 352, 593, 598
CviQI GTAC 4 cut(s) 449, 501, 505, 1317
DdeI CTNAG 9 cut(s) 542, 714, 741, 775, 814, 951, 974, 1277, 1299
EaeI YGGCCR 2 cut(s) 86, 675
EciI GGCGGA 1 cut(s) 287
Eco105I TACGTA 1 cut(s) 504
Eco130I CCWWGG 3 cut(s) 239, 1087, 1236
Eco147I AGGCCT 1 cut(s) 979
Eco24I GRGCYC 3 cut(s) 496, 846, 968
Eco47I GGWCC 2 cut(s) 236, 899
Eco81I CCTNAGG 1 cut(s) 1277
Eco91I GGTNACC 1 cut(s) 1157
EcoO65I GGTNACC 1 cut(s) 1157
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 871, 1173
EcoT14I CCWWGG 3 cut(s) 239, 1087, 1236
EcoT38I GRGCYC 3 cut(s) 496, 846, 968
ErhI CCWWGG 3 cut(s) 239, 1087, 1236
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 5 cut(s) 14, 243, 355, 596, 601
FalI AAGNNNNNCTT 2 cut(s) 1109, 1141
FaqI GGGAC 1 cut(s) 1351
FatI CATG 5 cut(s) 10, 239, 351, 592, 597
FauI CCCGC 2 cut(s) 8, 860
FauNDI CATATG 1 cut(s) 488
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 800
Fnu4HI GCNGC 6 cut(s) 133, 666, 807, 865, 1047, 1050
FokI GGATG 2 cut(s) 358, 1181
FriOI GRGCYC 3 cut(s) 496, 846, 968
Fsp4HI GCNGC 6 cut(s) 133, 666, 807, 865, 1047, 1050
FspAI RTGCGCAY 1 cut(s) 350
FspBI CTAG 2 cut(s) 828, 1122
FspI TGCGCA 3 cut(s) 350, 362, 1076
GlaI GCGC 3 cut(s) 350, 362, 1076
GluI GCNGC 6 cut(s) 133, 666, 807, 865, 1047, 1050
GsaI CCCAGC 1 cut(s) 1023
HaeIII GGCC 8 cut(s) 88, 677, 856, 871, 979, 1024, 1042, 1282
HapII CCGG 5 cut(s) 289, 481, 656, 725, 902
HhaI GCGC 3 cut(s) 351, 363, 1077
Hin1II CATG 5 cut(s) 14, 243, 355, 596, 601
Hin6I GCGC 3 cut(s) 349, 361, 1075
HinP1I GCGC 3 cut(s) 349, 361, 1075
HinfI GANTC 1 cut(s) 1304
HpaII CCGG 5 cut(s) 289, 481, 656, 725, 902
HphI GGTGA 3 cut(s) 614, 1103, 1169
Hpy166II GTNNAC 5 cut(s) 236, 374, 469, 801, 938
Hpy188I TCNGA 9 cut(s) 143, 462, 715, 734, 952, 970, 988, 1309, 1327
Hpy188III TCNNGA 4 cut(s) 902, 1142, 1195, 1244
Hpy8I GTNNAC 5 cut(s) 236, 374, 469, 801, 938
Hpy99I CGWCG 4 cut(s) 125, 476, 501, 683
HpyAV CCTTC 5 cut(s) 170, 208, 520, 749, 1198
HpyCH4III ACNGT 5 cut(s) 32, 121, 563, 942, 1063
HpyCH4IV ACGT 4 cut(s) 222, 474, 499, 503
HpyCH4V TGCA 9 cut(s) 35, 335, 374, 433, 469, 570, 864, 1049, 1313
HpyF10VI GCNNNNNNNGC 4 cut(s) 632, 674, 1083, 1136
HpyF3I CTNAG 9 cut(s) 542, 714, 741, 775, 814, 951, 974, 1277, 1299
HpySE526I ACGT 4 cut(s) 222, 474, 499, 503
Hsp92II CATG 5 cut(s) 14, 243, 355, 596, 601
HspAI GCGC 3 cut(s) 349, 361, 1075
Kpn2I TCCGGA 1 cut(s) 901
KroI GCCGGC 2 cut(s) 480, 724
KroNI GCCGGC 2 cut(s) 482, 726
Ksp22I TGATCA 1 cut(s) 418
LmnI GCTCC 3 cut(s) 655, 970, 1098
Lsp1109I GCAGC 5 cut(s) 677, 793, 876, 1033, 1061
LweI GCATC 5 cut(s) 249, 336, 1006, 1285, 1300
MaeI CTAG 2 cut(s) 828, 1122
MaeII ACGT 4 cut(s) 222, 474, 499, 503
MaeIII GTNAC 3 cut(s) 602, 1157, 1177
MboII GAAGA 7 cut(s) 104, 181, 238, 1210, 1213, 1279, 1354
MflI RGATCY 6 cut(s) 65, 180, 292, 442, 904, 1207
MhlI GDGCHC 5 cut(s) 376, 471, 496, 846, 968
MluCI AATT 8 cut(s) 253, 313, 395, 836, 887, 1145, 1253, 1349
MlyI GAGTC 1 cut(s) 1298
MmeI TCCRAC 2 cut(s) 166, 1350
MroI TCCGGA 1 cut(s) 901
MroNI GCCGGC 2 cut(s) 480, 724
MseI TTAA 1 cut(s) 1215
MslI CAYNNNNRTG 2 cut(s) 356, 1155
MspA1I CMGCKG 2 cut(s) 708, 867
MspCI CTTAAG 1 cut(s) 1214
MspI CCGG 5 cut(s) 289, 481, 656, 725, 902
MspR9I CCNGG 4 cut(s) 290, 656, 873, 1175
MvaI CCWGG 2 cut(s) 873, 1175
MwoI GCNNNNNNNGC 4 cut(s) 632, 674, 1083, 1136
NaeI GCCGGC 2 cut(s) 482, 726
NciI CCSGG 2 cut(s) 290, 656
NcoI CCATGG 1 cut(s) 239
NdeI CATATG 1 cut(s) 488
NgoMIV GCCGGC 2 cut(s) 480, 724
NlaIII CATG 5 cut(s) 14, 243, 355, 596, 601
NlaIV GGNNCC 4 cut(s) 306, 723, 900, 1085
NmeAIII GCCGAG 1 cut(s) 1308
NmuCI GTSAC 2 cut(s) 602, 1157
NsbI TGCGCA 3 cut(s) 350, 362, 1076
NspV TTCGAA 1 cut(s) 588
PceI AGGCCT 1 cut(s) 979
PdiI GCCGGC 2 cut(s) 482, 726
Pfl23II CGTACG 1 cut(s) 500
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 6 cut(s) 134, 667, 808, 866, 1048, 1051
PleI GAGTC 1 cut(s) 1298
PpsI GAGTC 1 cut(s) 1298
Ppu21I YACGTR 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 871, 1173
PspEI GGTNACC 1 cut(s) 1157
PspFI CCCAGC 1 cut(s) 1019
PspGI CCWGG 2 cut(s) 871, 1173
PspLI CGTACG 1 cut(s) 500
PspN4I GGNNCC 4 cut(s) 306, 723, 900, 1085
PspPI GGNCC 6 cut(s) 236, 854, 869, 899, 1022, 1040
PsrI GAACNNNNNNTAC 2 cut(s) 441, 473
PstI CTGCAG 1 cut(s) 1051
PsuI RGATCY 6 cut(s) 65, 180, 292, 442, 904, 1207
PvuII CAGCTG 1 cut(s) 708
RsaI GTAC 4 cut(s) 450, 502, 506, 1318
RsaNI GTAC 4 cut(s) 449, 501, 505, 1317
RseI CAYNNNNRTG 2 cut(s) 356, 1155
SaqAI TTAA 1 cut(s) 1215
SatI GCNGC 6 cut(s) 133, 666, 807, 865, 1047, 1050
Sau96I GGNCC 6 cut(s) 236, 854, 869, 899, 1022, 1040
SchI GAGTC 1 cut(s) 1298
ScrFI CCNGG 4 cut(s) 290, 656, 873, 1175
SduI GDGCHC 5 cut(s) 376, 471, 496, 846, 968
SfaNI GCATC 5 cut(s) 249, 336, 1006, 1285, 1300
SfcI CTRYAG 2 cut(s) 849, 1047
SfuI TTCGAA 1 cut(s) 588
SinI GGWCC 2 cut(s) 236, 899
SmiMI CAYNNNNRTG 2 cut(s) 356, 1155
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
SnaBI TACGTA 1 cut(s) 504
Sse9I AATT 8 cut(s) 253, 313, 395, 836, 887, 1145, 1253, 1349
SseBI AGGCCT 1 cut(s) 979
SsiI CCGC 7 cut(s) 15, 132, 272, 323, 412, 521, 867
SspMI CTAG 2 cut(s) 828, 1122
StuI AGGCCT 1 cut(s) 979
StyD4I CCNGG 4 cut(s) 288, 654, 871, 1173
StyI CCWWGG 3 cut(s) 239, 1087, 1236
TaaI ACNGT 5 cut(s) 32, 121, 563, 942, 1063
TaiI ACGT 4 cut(s) 225, 477, 502, 506
TaqI TCGA 7 cut(s) 6, 257, 496, 531, 537, 588, 681
TasI AATT 8 cut(s) 253, 313, 395, 836, 887, 1145, 1253, 1349
TauI GCSGC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 1215
Tru9I TTAA 1 cut(s) 1215
TscAI CASTG 4 cut(s) 342, 652, 783, 1137
TseFI GTSAC 2 cut(s) 602, 1157
TseI GCWGC 5 cut(s) 665, 806, 864, 1046, 1049
Tsp45I GTSAC 2 cut(s) 602, 1157
TspDTI ATGAA 1 cut(s) 1139
TspGWI ACGGA 3 cut(s) 152, 297, 767
TspRI CASTG 4 cut(s) 342, 652, 783, 1137
Vha464I CTTAAG 1 cut(s) 1214
VneI GTGCAC 2 cut(s) 372, 467
VpaK11BI GGWCC 2 cut(s) 236, 899
XapI RAATTY 4 cut(s) 313, 1145, 1253, 1349
XmiI GTMKAC 1 cut(s) 800
XspI CTAG 2 cut(s) 828, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.