Rmu_sc0036257.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036257.1
OG0000123
Physical Location & Seq
Reverse (-)
2 .. 595
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036257.1_g000001.1.cds

Sequence Viewer

Length: 594 bp
atggcggcgggggcagcggtggctaatcctgcatggactgaagcggctgtgatgaatttgattgggggtggcgaagcaatccatgattctttcttttacctctgtgggcgtctgttgtcttcaaagtgcatggagatatcatcgttcgcgacggcgatctctggtgtttggagattgaaagagcgtgtgttgattcgccaggaggagggaggtattttcgttttccagttcaaggagcaggaggcgaagacacatgtcctcaatggcgacccttggttttataacaattctatgttgttggtggaggattatgatggtgttagggctgtggaggaggtatcgctgcgctaccttgaggtttgggtggcggtgacggggctttgtattgctatgcgtaatgaacgagccctaaccctacttggaaaagatttggggcaatttgtaaggtttgatcaagcggcgatagtgaggaaggatccgatcgagaggatccgggtgatccatgatgtacgacgtcgggtttgggctcgtcgcacgtacaacttctcgccggaggtggcggtggttttggagtttaggtacgaaaagtgccat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

198

Amino Acids

22.62

Weight (kDa)

6.91

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AatII GACGTC 1 cut(s) 517
AccII CGCG 1 cut(s) 149
AciI CCGC 7 cut(s) 5, 8, 17, 44, 368, 458, 560
AclWI GGATC 5 cut(s) 470, 483, 484, 493, 497
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 60
AcyI GRCGYC 2 cut(s) 109, 514
AfaI GTAC 3 cut(s) 510, 539, 581
AfiI CCNNNNNNNGG 2 cut(s) 205, 232
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 3 cut(s) 123, 178, 232
AjnI CCWGG 1 cut(s) 198
AlwI GGATC 5 cut(s) 470, 483, 484, 493, 497
ApeKI GCWGC 2 cut(s) 14, 343
ApoI RAATTY 1 cut(s) 55
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AspLEI GCGC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 382, 508
BamHI GGATCC 2 cut(s) 475, 489
BanII GRGCYC 2 cut(s) 409, 529
BbsI GAAGAC 2 cut(s) 111, 254
BbvI GCAGC 2 cut(s) 26, 330
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 494
BisI GCNGC 5 cut(s) 6, 15, 45, 344, 459
BlsI GCNGC 5 cut(s) 7, 16, 46, 345, 460
Bme1390I CCNGG 2 cut(s) 200, 494
BmiI GGNNCC 2 cut(s) 477, 491
BmrFI CCNGG 2 cut(s) 200, 494
BoxI GACNNNNGTC 1 cut(s) 254
BpiI GAAGAC 2 cut(s) 111, 254
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 494
BsaAI YACGTR 1 cut(s) 537
BsaHI GRCGYC 2 cut(s) 109, 514
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 232
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 205, 232
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 218, 347
BseXI GCAGC 2 cut(s) 26, 330
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 483
BsiSI CCGG 2 cut(s) 493, 551
BslI CCNNNNNNNGG 2 cut(s) 205, 232
Bsp1286I GDGCHC 2 cut(s) 409, 529
Bsp143I GATC 6 cut(s) 156, 451, 475, 480, 489, 498
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 7 cut(s) 5, 8, 17, 44, 368, 458, 560
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 477, 491
BspPI GGATC 5 cut(s) 470, 483, 484, 493, 497
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 6 cut(s) 156, 451, 475, 480, 489, 498
BssNI GRCGYC 2 cut(s) 109, 514
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 200
BstACI GRCGYC 2 cut(s) 109, 514
BstBAI YACGTR 1 cut(s) 537
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 6 cut(s) 159, 454, 478, 483, 492, 501
BstMBI GATC 6 cut(s) 156, 451, 475, 480, 489, 498
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 4 cut(s) 11, 14, 20, 29
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 198, 492
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 26, 330
BstV2I GAAGAC 2 cut(s) 111, 254
BstX2I RGATCY 2 cut(s) 475, 489
BstYI RGATCY 2 cut(s) 475, 489
BtuMI TCGCGA 1 cut(s) 149
CfoI GCGC 1 cut(s) 348
CseI GACGC 1 cut(s) 98
Csp6I GTAC 3 cut(s) 509, 538, 580
CviAII CATG 5 cut(s) 33, 83, 130, 254, 503
CviJI RGCY 6 cut(s) 23, 47, 326, 379, 407, 527
CviKI_1 RGCY 6 cut(s) 23, 47, 326, 379, 407, 527
CviQI GTAC 3 cut(s) 509, 538, 580
DpnI GATC 6 cut(s) 158, 453, 477, 482, 491, 500
DpnII GATC 6 cut(s) 156, 451, 475, 480, 489, 498
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 2 cut(s) 409, 529
Eco32I GATATC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 2 cut(s) 409, 529
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 5 cut(s) 36, 86, 133, 257, 506
FaiI YATR 9 cut(s) 34, 84, 131, 255, 282, 293, 312, 392, 504
FatI CATG 5 cut(s) 32, 82, 129, 253, 502
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 6, 15, 45, 344, 459
FriOI GRGCYC 2 cut(s) 409, 529
Fsp4HI GCNGC 5 cut(s) 6, 15, 45, 344, 459
GlaI GCGC 1 cut(s) 347
GluI GCNGC 5 cut(s) 6, 15, 45, 344, 459
HapII CCGG 2 cut(s) 493, 551
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 348
Hin1I GRCGYC 2 cut(s) 109, 514
Hin1II CATG 5 cut(s) 36, 86, 133, 257, 506
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 2 cut(s) 86, 193
HpaII CCGG 2 cut(s) 493, 551
HphI GGTGA 2 cut(s) 382, 508
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 2 cut(s) 148, 484
Hpy99I CGWCG 4 cut(s) 154, 516, 519, 534
HpyAV CCTTC 1 cut(s) 466
HpyCH4IV ACGT 2 cut(s) 514, 536
HpyCH4V TGCA 2 cut(s) 32, 129
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 14, 20, 29
HpySE526I ACGT 2 cut(s) 514, 536
Hsp92I GRCGYC 2 cut(s) 109, 514
Hsp92II CATG 5 cut(s) 36, 86, 133, 257, 506
HspAI GCGC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 6 cut(s) 156, 451, 475, 480, 489, 498
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 42, 147, 185, 212, 224, 239, 506, 564
Lsp1109I GCAGC 2 cut(s) 26, 330
MaeII ACGT 2 cut(s) 514, 536
MaeIII GTNAC 1 cut(s) 370
MalI GATC 6 cut(s) 158, 453, 477, 482, 491, 500
MboI GATC 6 cut(s) 156, 451, 475, 480, 489, 498
MboII GAAGA 2 cut(s) 111, 259
MflI RGATCY 2 cut(s) 475, 489
MhlI GDGCHC 2 cut(s) 409, 529
MluCI AATT 3 cut(s) 55, 286, 437
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 2 cut(s) 493, 551
MspR9I CCNGG 2 cut(s) 200, 494
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 11, 14, 20, 29
NciI CCSGG 1 cut(s) 494
NdeII GATC 6 cut(s) 156, 451, 475, 480, 489, 498
NlaIII CATG 5 cut(s) 36, 86, 133, 257, 506
NlaIV GGNNCC 2 cut(s) 477, 491
NmuCI GTSAC 1 cut(s) 370
NruI TCGCGA 1 cut(s) 149
NspI RCATGY 1 cut(s) 257
PciI ACATGT 1 cut(s) 253
PfeI GAWTC 2 cut(s) 86, 193
PkrI GCNGC 5 cut(s) 7, 16, 46, 345, 460
Ple19I CGATCG 1 cut(s) 483
Ppu21I YACGTR 1 cut(s) 537
PscI ACATGT 1 cut(s) 253
PshAI GACNNNNGTC 1 cut(s) 254
PsiI TTATAA 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 477, 491
PsuI RGATCY 2 cut(s) 475, 489
PvuI CGATCG 1 cut(s) 483
RruI TCGCGA 1 cut(s) 149
RsaI GTAC 3 cut(s) 510, 539, 581
RsaNI GTAC 3 cut(s) 509, 538, 580
SatI GCNGC 5 cut(s) 6, 15, 45, 344, 459
Sau3AI GATC 6 cut(s) 156, 451, 475, 480, 489, 498
ScrFI CCNGG 2 cut(s) 200, 494
SduI GDGCHC 2 cut(s) 409, 529
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 3 cut(s) 55, 286, 437
SsiI CCGC 7 cut(s) 5, 8, 17, 44, 368, 458, 560
StyD4I CCNGG 2 cut(s) 198, 492
StyI CCWWGG 1 cut(s) 272
TaiI ACGT 2 cut(s) 517, 539
TaqI TCGA 1 cut(s) 483
TasI AATT 3 cut(s) 55, 286, 437
TauI GCSGC 3 cut(s) 8, 47, 461
TfiI GAWTC 2 cut(s) 86, 193
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 14, 343
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 68, 414
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 257
ZraI GACGTC 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.