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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 182, 245 |
| Acc16I | TGCGCA | 1 cut(s) | 335 |
| Acc36I | ACCTGC | 3 cut(s) | 182, 245, 310 |
| AccB1I | GGYRCC | 1 cut(s) | 342 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 167 |
| AciI | CCGC | 2 cut(s) | 44, 126 |
| AclWI | GGATC | 1 cut(s) | 187 |
| AcsI | RAATTY | 1 cut(s) | 404 |
| AfaI | GTAC | 2 cut(s) | 565, 597 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 137, 167, 525 |
| AgsI | TTSAA | 2 cut(s) | 50, 100 |
| AjnI | CCWGG | 2 cut(s) | 130, 432 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 396, 428 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 306, 338 |
| AluBI | AGCT | 4 cut(s) | 166, 232, 360, 384 |
| AluI | AGCT | 4 cut(s) | 166, 232, 360, 384 |
| Alw26I | GTCTC | 1 cut(s) | 80 |
| AlwI | GGATC | 1 cut(s) | 187 |
| AoxI | GGCC | 3 cut(s) | 128, 157, 236 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 2 cut(s) | 32, 305 |
| ApoI | RAATTY | 1 cut(s) | 404 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 79, 111 |
| AspLEI | GCGC | 1 cut(s) | 336 |
| AspS9I | GGNCC | 3 cut(s) | 128, 157, 158 |
| AsuHPI | GGTGA | 1 cut(s) | 428 |
| AxyI | CCTNAGG | 2 cut(s) | 524, 579 |
| BaeGI | GKGCMC | 1 cut(s) | 161 |
| BanI | GGYRCC | 1 cut(s) | 342 |
| BanII | GRGCYC | 3 cut(s) | 111, 161, 227 |
| BbsI | GAAGAC | 2 cut(s) | 455, 521 |
| BbvCI | CCTCAGC | 1 cut(s) | 530 |
| BbvI | GCAGC | 2 cut(s) | 44, 292 |
| BccI | CCATC | 4 cut(s) | 31, 56, 208, 488 |
| BceAI | ACGGC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 2 cut(s) | 132, 434 |
| BciVI | GTATCC | 1 cut(s) | 79 |
| BcoDI | GTCTC | 1 cut(s) | 80 |
| BfaI | CTAG | 4 cut(s) | 56, 183, 297, 381 |
| BfmI | CTRYAG | 1 cut(s) | 306 |
| BfuAI | ACCTGC | 3 cut(s) | 182, 245, 310 |
| BfuI | GTATCC | 1 cut(s) | 79 |
| BisI | GCNGC | 2 cut(s) | 33, 306 |
| BlpI | GCTNAGC | 1 cut(s) | 279 |
| BlsI | GCNGC | 2 cut(s) | 34, 307 |
| BmcAI | AGTACT | 1 cut(s) | 597 |
| Bme1390I | CCNGG | 2 cut(s) | 132, 434 |
| BmgT120I | GGNCC | 3 cut(s) | 128, 157, 158 |
| BmiI | GGNNCC | 2 cut(s) | 159, 344 |
| BmrFI | CCNGG | 2 cut(s) | 132, 434 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BpiI | GAAGAC | 2 cut(s) | 455, 521 |
| Bpu10I | CCTNAGC | 2 cut(s) | 233, 530 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 3 cut(s) | 131, 346, 483 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 51, 81, 356, 386 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 137, 167, 525 |
| Bse1I | ACTGG | 1 cut(s) | 80 |
| Bse21I | CCTNAGG | 2 cut(s) | 524, 579 |
| BseBI | CCWGG | 2 cut(s) | 132, 434 |
| BseDI | CCNNGG | 3 cut(s) | 131, 346, 483 |
| BseGI | GGATG | 1 cut(s) | 433 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 137, 167, 525 |
| BseMII | CTCAG | 6 cut(s) | 72, 201, 237, 270, 515, 521 |
| BseNI | ACTGG | 1 cut(s) | 80 |
| BseRI | GAGGAG | 1 cut(s) | 98 |
| BseSI | GKGCMC | 1 cut(s) | 161 |
| BseXI | GCAGC | 2 cut(s) | 44, 292 |
| BseYI | CCCAGC | 3 cut(s) | 5, 122, 202 |
| BshFI | GGCC | 3 cut(s) | 130, 159, 238 |
| BshNI | GGYRCC | 1 cut(s) | 342 |
| BslFI | GGGAC | 1 cut(s) | 598 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 137, 167, 525 |
| BsmAI | GTCTC | 1 cut(s) | 80 |
| BsmBI | CGTCTC | 1 cut(s) | 80 |
| BsmFI | GGGAC | 1 cut(s) | 598 |
| BsnI | GGCC | 3 cut(s) | 130, 159, 238 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 3 cut(s) | 111, 161, 227 |
| Bsp143I | GATC | 1 cut(s) | 179 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 279 |
| BspACI | CCGC | 2 cut(s) | 44, 126 |
| BspANI | GGCC | 3 cut(s) | 130, 159, 238 |
| BspCNI | CTCAG | 6 cut(s) | 73, 202, 238, 271, 516, 522 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 2 cut(s) | 159, 344 |
| BspMAI | CTGCAG | 1 cut(s) | 310 |
| BspMI | ACCTGC | 3 cut(s) | 182, 245, 310 |
| BspPI | GGATC | 1 cut(s) | 187 |
| BspT107I | GGYRCC | 1 cut(s) | 342 |
| BsrI | ACTGG | 1 cut(s) | 80 |
| BssECI | CCNNGG | 3 cut(s) | 131, 346, 483 |
| BssMI | GATC | 1 cut(s) | 179 |
| BssT1I | CCWWGG | 2 cut(s) | 346, 483 |
| Bst2UI | CCWGG | 2 cut(s) | 132, 434 |
| Bst4CI | ACNGT | 1 cut(s) | 322 |
| Bst6I | CTCTTC | 1 cut(s) | 362 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 342 |
| BstC8I | GCNNGC | 1 cut(s) | 128 |
| BstDEI | CTNAG | 9 cut(s) | 81, 210, 233, 246, 279, 524, 530, 579, 603 |
| BstF5I | GGATG | 1 cut(s) | 433 |
| BstHHI | GCGC | 1 cut(s) | 336 |
| BstKTI | GATC | 1 cut(s) | 182 |
| BstMAI | GTCTC | 1 cut(s) | 80 |
| BstMBI | GATC | 1 cut(s) | 179 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 342, 357 |
| BstNI | CCWGG | 2 cut(s) | 132, 434 |
| BstSCI | CCNGG | 2 cut(s) | 130, 432 |
| BstSFI | CTRYAG | 1 cut(s) | 306 |
| BstSLI | GKGCMC | 1 cut(s) | 161 |
| BstV1I | GCAGC | 2 cut(s) | 44, 292 |
| BstV2I | GAAGAC | 2 cut(s) | 455, 521 |
| BstX2I | RGATCY | 1 cut(s) | 179 |
| BstYI | RGATCY | 1 cut(s) | 179 |
| Bsu36I | CCTNAGG | 2 cut(s) | 524, 579 |
| BsuI | GTATCC | 1 cut(s) | 79 |
| BsuRI | GGCC | 3 cut(s) | 130, 159, 238 |
| BtgZI | GCGATG | 1 cut(s) | 50 |
| BtsCI | GGATG | 1 cut(s) | 433 |
| BtsI | GCAGTG | 1 cut(s) | 396 |
| BtsIMutI | CAGTG | 1 cut(s) | 396 |
| BveI | ACCTGC | 3 cut(s) | 182, 245, 310 |
| Cac8I | GCNNGC | 1 cut(s) | 128 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 1 cut(s) | 336 |
| Cfr13I | GGNCC | 3 cut(s) | 128, 157, 158 |
| Csp6I | GTAC | 2 cut(s) | 564, 596 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 335, 370 |
| CviAII | CATG | 1 cut(s) | 491 |
| CviQI | GTAC | 2 cut(s) | 564, 596 |
| DdeI | CTNAG | 9 cut(s) | 81, 210, 233, 246, 279, 524, 530, 579, 603 |
| DpnI | GATC | 1 cut(s) | 181 |
| DpnII | GATC | 1 cut(s) | 179 |
| Eam1104I | CTCTTC | 1 cut(s) | 362 |
| EarI | CTCTTC | 1 cut(s) | 362 |
| Eco130I | CCWWGG | 2 cut(s) | 346, 483 |
| Eco147I | AGGCCT | 1 cut(s) | 238 |
| Eco24I | GRGCYC | 3 cut(s) | 111, 161, 227 |
| Eco81I | CCTNAGG | 2 cut(s) | 524, 579 |
| EcoRII | CCWGG | 2 cut(s) | 130, 432 |
| EcoT14I | CCWWGG | 2 cut(s) | 346, 483 |
| EcoT38I | GRGCYC | 3 cut(s) | 111, 161, 227 |
| ErhI | CCWWGG | 2 cut(s) | 346, 483 |
| Esp3I | CGTCTC | 1 cut(s) | 80 |
| FaeI | CATG | 1 cut(s) | 494 |
| FaiI | YATR | 1 cut(s) | 492 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 368, 400 |
| FaqI | GGGAC | 1 cut(s) | 598 |
| FatI | CATG | 1 cut(s) | 490 |
| FauI | CCCGC | 1 cut(s) | 119 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 306 |
| FokI | GGATG | 1 cut(s) | 440 |
| FriOI | GRGCYC | 3 cut(s) | 111, 161, 227 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 306 |
| FspBI | CTAG | 4 cut(s) | 56, 183, 297, 381 |
| FspI | TGCGCA | 1 cut(s) | 335 |
| GlaI | GCGC | 1 cut(s) | 335 |
| GluI | GCNGC | 2 cut(s) | 33, 306 |
| GsaI | CCCAGC | 3 cut(s) | 9, 126, 206 |
| HaeIII | GGCC | 3 cut(s) | 130, 159, 238 |
| HhaI | GCGC | 1 cut(s) | 336 |
| Hin1II | CATG | 1 cut(s) | 494 |
| Hin6I | GCGC | 1 cut(s) | 334 |
| HinP1I | GCGC | 1 cut(s) | 334 |
| HinfI | GANTC | 1 cut(s) | 551 |
| HphI | GGTGA | 1 cut(s) | 428 |
| Hpy166II | GTNNAC | 2 cut(s) | 197, 419 |
| Hpy188I | TCNGA | 6 cut(s) | 82, 211, 229, 247, 556, 574 |
| Hpy188III | TCNNGA | 1 cut(s) | 491 |
| Hpy8I | GTNNAC | 2 cut(s) | 197, 419 |
| HpyAV | CCTTC | 3 cut(s) | 44, 305, 457 |
| HpyCH4III | ACNGT | 1 cut(s) | 322 |
| HpyCH4IV | ACGT | 1 cut(s) | 558 |
| HpyCH4V | TGCA | 2 cut(s) | 191, 308 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 342, 357 |
| HpyF3I | CTNAG | 9 cut(s) | 81, 210, 233, 246, 279, 524, 530, 579, 603 |
| HpySE526I | ACGT | 1 cut(s) | 558 |
| Hsp92II | CATG | 1 cut(s) | 494 |
| HspAI | GCGC | 1 cut(s) | 334 |
| Kzo9I | GATC | 1 cut(s) | 179 |
| LmnI | GCTCC | 3 cut(s) | 22, 229, 357 |
| Lsp1109I | GCAGC | 2 cut(s) | 44, 292 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeI | CTAG | 4 cut(s) | 56, 183, 297, 381 |
| MaeII | ACGT | 1 cut(s) | 558 |
| MaeIII | GTNAC | 1 cut(s) | 436 |
| MalI | GATC | 1 cut(s) | 181 |
| MboI | GATC | 1 cut(s) | 179 |
| MboII | GAAGA | 6 cut(s) | 379, 460, 469, 472, 526, 601 |
| MflI | RGATCY | 1 cut(s) | 179 |
| MhlI | GDGCHC | 3 cut(s) | 111, 161, 227 |
| MluCI | AATT | 4 cut(s) | 94, 101, 404, 500 |
| MlyI | GAGTC | 1 cut(s) | 545 |
| MmeI | TCCRAC | 1 cut(s) | 597 |
| MnlI | CCTC | 7 cut(s) | 22, 76, 241, 363, 519, 525, 541 |
| MseI | TTAA | 1 cut(s) | 374 |
| MslI | CAYNNNNRTG | 1 cut(s) | 414 |
| MspA1I | CMGCKG | 1 cut(s) | 126 |
| MspR9I | CCNGG | 2 cut(s) | 132, 434 |
| MvaI | CCWGG | 2 cut(s) | 132, 434 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 342, 357 |
| NdeII | GATC | 1 cut(s) | 179 |
| NlaIII | CATG | 1 cut(s) | 494 |
| NlaIV | GGNNCC | 2 cut(s) | 159, 344 |
| NsbI | TGCGCA | 1 cut(s) | 335 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PaqCI | CACCTGC | 2 cut(s) | 182, 245 |
| PceI | AGGCCT | 1 cut(s) | 238 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 167 |
| PkrI | GCNGC | 2 cut(s) | 34, 307 |
| PleI | GAGTC | 1 cut(s) | 545 |
| PpsI | GAGTC | 1 cut(s) | 545 |
| Psp6I | CCWGG | 2 cut(s) | 130, 432 |
| PspFI | CCCAGC | 3 cut(s) | 5, 122, 202 |
| PspGI | CCWGG | 2 cut(s) | 130, 432 |
| PspN4I | GGNNCC | 2 cut(s) | 159, 344 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 3 cut(s) | 128, 157, 158 |
| PstI | CTGCAG | 1 cut(s) | 310 |
| PsuI | RGATCY | 1 cut(s) | 179 |
| RsaI | GTAC | 2 cut(s) | 565, 597 |
| RsaNI | GTAC | 2 cut(s) | 564, 596 |
| RseI | CAYNNNNRTG | 1 cut(s) | 414 |
| SaqAI | TTAA | 1 cut(s) | 374 |
| SatI | GCNGC | 2 cut(s) | 33, 306 |
| Sau3AI | GATC | 1 cut(s) | 179 |
| Sau96I | GGNCC | 3 cut(s) | 128, 157, 158 |
| ScaI | AGTACT | 1 cut(s) | 597 |
| SchI | GAGTC | 1 cut(s) | 545 |
| ScrFI | CCNGG | 2 cut(s) | 132, 434 |
| SduI | GDGCHC | 3 cut(s) | 111, 161, 227 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SfcI | CTRYAG | 1 cut(s) | 306 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 414 |
| Sse9I | AATT | 4 cut(s) | 94, 101, 404, 500 |
| SseBI | AGGCCT | 1 cut(s) | 238 |
| SsiI | CCGC | 2 cut(s) | 44, 126 |
| SspMI | CTAG | 4 cut(s) | 56, 183, 297, 381 |
| StuI | AGGCCT | 1 cut(s) | 238 |
| StyD4I | CCNGG | 2 cut(s) | 130, 432 |
| StyI | CCWWGG | 2 cut(s) | 346, 483 |
| TaaI | ACNGT | 1 cut(s) | 322 |
| TaiI | ACGT | 1 cut(s) | 561 |
| TasI | AATT | 4 cut(s) | 94, 101, 404, 500 |
| TatI | WGTACW | 1 cut(s) | 595 |
| Tru1I | TTAA | 1 cut(s) | 374 |
| Tru9I | TTAA | 1 cut(s) | 374 |
| TscAI | CASTG | 1 cut(s) | 396 |
| TseI | GCWGC | 2 cut(s) | 32, 305 |
| TspDTI | ATGAA | 2 cut(s) | 398, 479 |
| TspRI | CASTG | 1 cut(s) | 396 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 167 |
| XapI | RAATTY | 1 cut(s) | 404 |
| XspI | CTAG | 4 cut(s) | 56, 183, 297, 381 |
| ZrmI | AGTACT | 1 cut(s) | 597 |