Rmu_sc0005220.1_g000016

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005220.1
OG0000123
Physical Location & Seq
Reverse (-)
91367 .. 92620
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005220.1_g000016.1.cds

Sequence Viewer

Length: 1254 bp
atggcggcagagggtgcggcggcgtctctcgccttgtcggaggaggccgtagtgaacctggtggggggcggggatgtgatctccgatccgtttttctacttatgtgggcgtctgctgactaagaaaccggtggttatcccatccttcgtggcggcgatgtccggagtgtggaggctaaaggagagggttcggatccgtgaagaggaggtagggatcttcgtgttccaatttaaggagcaggaagcgaaacatcgtgttcttcatggagacccatggtattttagcaattcgatgcttttgttggctgattatgacggtgtaggggctctggcggaggctcctttgcactttctggaggtgtgggtggcggtgacgggcctgagagtggctatgcgtactgtgcagactctcacccggattggcaacatgttgggcacttttgtgaaggctgatcatgtagcgttgcaaaggaaggaggctactcagaggatccgtttggtccatgatgtgcggcaacgagtctgggctcggaggacgatctgtttctcgccggcggtttcggtagagctggagtttcgttatgaaaagtgtcgagggatctgcaaggggtgtggtttcttcacccatgctggaggggattgtgaccgaaagttggtgaaggaagtggtagtggaggacttggttctgccgtcgaaagatttacagaatgagttgttgccgtccaatggtaccgtggcaccgtcgtcgtctcttgatgtggtggaggcgctgcagactgggtcggcgattctggtaccggcgttgggctctggagccgtgcaagtgatggaggcagggcaggatgcggcggggacggagctgagccctcaaatggcagcgccgagattttcggcgggaacccctaatttcaaattagggttgaccgctgggctcgggttgacctctttgaaaggtgttgggccgggtattgggtcagttggacttggacttgaaggttctgggcctattgctgatggtttccctggacacccatctagggttttgggtgtgaggaggcttcgggaggaggactggcttgacgatgggaaacgattgaagttttctgcaggcttcgtcgatgtcccagtcactgatgggaaaccaaagaagaagggccgaccacgtggtagtcggaataagcccaagtccactttagaggtgaaggttggggggccgtcttcggaggagctgaacgtccttcctcaagaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

417

Amino Acids

44.82

Weight (kDa)

8.45

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 728, 793
AccB1I GGYRCC 3 cut(s) 728, 736, 793
AccIII TCCGGA 1 cut(s) 161
AclWI GGATC 7 cut(s) 80, 187, 200, 221, 484, 497, 605
AcvI CACGTG 1 cut(s) 1163
AcyI GRCGYC 2 cut(s) 23, 109
AfaI GTAC 3 cut(s) 397, 730, 795
AflIII ACRYGT 1 cut(s) 426
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 4 cut(s) 910, 949, 992, 1096
AjnI CCWGG 2 cut(s) 57, 1021
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 3 cut(s) 568, 859, 1228
AluI AGCT 3 cut(s) 568, 859, 1228
Alw26I GTCTC 3 cut(s) 30, 261, 753
AlwI GGATC 7 cut(s) 80, 187, 200, 221, 484, 497, 605
AlwNI CAGNNNCTG 1 cut(s) 1130
Ama87I CYCGRG 1 cut(s) 932
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 6 cut(s) 45, 376, 959, 1001, 1153, 1211
ApeKI GCWGC 2 cut(s) 769, 875
AsiGI ACCGGT 1 cut(s) 127
Asp718I GGTACC 2 cut(s) 728, 793
AspLEI GCGC 2 cut(s) 769, 880
AspS9I GGNCC 6 cut(s) 376, 499, 959, 1001, 1153, 1211
AsuC2I CCSGG 2 cut(s) 415, 963
AsuHPI GGTGA 5 cut(s) 382, 403, 613, 667, 1210
AvaI CYCGRG 1 cut(s) 932
AvaII GGWCC 1 cut(s) 499
BaeGI GKGCMC 1 cut(s) 437
BaeI ACNNNNGTAYC 2 cut(s) 785, 818
BamHI GGATCC 2 cut(s) 192, 489
BanI GGYRCC 3 cut(s) 728, 736, 793
BanII GRGCYC 5 cut(s) 328, 529, 809, 866, 933
BbrPI CACGTG 1 cut(s) 1163
BbsI GAAGAC 1 cut(s) 1209
BbvI GCAGC 2 cut(s) 756, 887
BccI CCATC 6 cut(s) 148, 820, 1007, 1039, 1076, 1127
BceAI ACGGC 5 cut(s) 32, 673, 703, 800, 1198
BcgI CGANNNNNNTGC 4 cut(s) 582, 616, 726, 760
BciT130I CCWGG 2 cut(s) 59, 1023
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 2 cut(s) 415, 963
BcoDI GTCTC 3 cut(s) 30, 261, 753
BfaI CTAG 2 cut(s) 1035, 1252
BfmI CTRYAG 2 cut(s) 770, 1104
BfoI RGCGCY 2 cut(s) 770, 881
BisI GCNGC 8 cut(s) 6, 18, 21, 153, 512, 770, 846, 876
BlpI GCTNAGC 1 cut(s) 860
BlsI GCNGC 8 cut(s) 7, 19, 22, 154, 513, 771, 847, 877
Bme1390I CCNGG 4 cut(s) 59, 415, 963, 1023
Bme18I GGWCC 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 932
BmgT120I GGNCC 6 cut(s) 376, 499, 959, 1001, 1153, 1211
BmiI GGNNCC 9 cut(s) 194, 339, 491, 730, 738, 795, 814, 898, 1212
BmrFI CCNGG 4 cut(s) 59, 415, 963, 1023
BmrI ACTGGG 2 cut(s) 786, 1118
BmsI GCATC 2 cut(s) 282, 832
BmuI ACTGGG 2 cut(s) 786, 1118
BpiI GAAGAC 1 cut(s) 1209
BpmI CTGGAG 4 cut(s) 374, 590, 651, 831
Bpu1102I GCTNAGC 1 cut(s) 860
BpuEI CTTGAG 1 cut(s) 1227
BpuMI CCSGG 2 cut(s) 415, 963
BsaAI YACGTR 1 cut(s) 1163
BsaHI GRCGYC 2 cut(s) 23, 109
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 272, 732, 1021
BsaWI WCCGGW 2 cut(s) 127, 161
Bse118I RCCGGY 3 cut(s) 127, 550, 796
Bse1I ACTGG 3 cut(s) 781, 1076, 1124
BseAI TCCGGA 1 cut(s) 161
BseBI CCWGG 2 cut(s) 59, 1023
BseDI CCNNGG 3 cut(s) 272, 732, 1021
BseGI GGATG 3 cut(s) 79, 140, 847
BseMII CTCAG 3 cut(s) 371, 497, 851
BseNI ACTGG 3 cut(s) 781, 1076, 1124
BseRI GAGGAG 5 cut(s) 56, 218, 1066, 1079, 1238
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 2 cut(s) 756, 887
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 422
BshFI GGCC 6 cut(s) 47, 378, 961, 1003, 1155, 1213
BshNI GGYRCC 3 cut(s) 728, 736, 793
BshTI ACCGGT 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 6 cut(s) 128, 162, 415, 551, 797, 962
BslFI GGGAC 2 cut(s) 865, 1106
BsmAI GTCTC 3 cut(s) 30, 261, 753
BsmBI CGTCTC 2 cut(s) 30, 753
BsmFI GGGAC 2 cut(s) 865, 1106
BsnI GGCC 6 cut(s) 47, 378, 961, 1003, 1155, 1213
Bso31I GGTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 932
Bsp1286I GDGCHC 6 cut(s) 328, 437, 529, 809, 866, 933
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
Bsp1720I GCTNAGC 1 cut(s) 860
Bsp19I CCATGG 1 cut(s) 272
BspANI GGCC 6 cut(s) 47, 378, 961, 1003, 1155, 1213
BspCNI CTCAG 3 cut(s) 372, 496, 852
BspEI TCCGGA 1 cut(s) 161
BspLI GGNNCC 9 cut(s) 194, 339, 491, 730, 738, 795, 814, 898, 1212
BspMAI CTGCAG 2 cut(s) 774, 1108
BspPI GGATC 7 cut(s) 80, 187, 200, 221, 484, 497, 605
BspT107I GGYRCC 3 cut(s) 728, 736, 793
BspTNI GGTCTC 1 cut(s) 261
BsrFI RCCGGY 3 cut(s) 127, 550, 796
BsrI ACTGG 3 cut(s) 781, 1076, 1124
BssAI RCCGGY 3 cut(s) 127, 550, 796
BssECI CCNNGG 3 cut(s) 272, 732, 1021
BssMI GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
BssNI GRCGYC 2 cut(s) 23, 109
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 59, 1023
Bst4CI ACNGT 4 cut(s) 317, 400, 733, 741
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 2 cut(s) 23, 109
BstAPI GCANNNNNTGC 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 1163
BstC8I GCNNGC 2 cut(s) 552, 1108
BstDEI CTNAG 4 cut(s) 120, 380, 483, 860
BstDSI CCRYGG 2 cut(s) 272, 732
BstF5I GGATG 3 cut(s) 79, 140, 847
BstH2I RGCGCY 2 cut(s) 770, 881
BstHHI GCGC 2 cut(s) 769, 880
BstKTI GATC 8 cut(s) 81, 88, 195, 216, 454, 492, 540, 600
BstMAI GTCTC 3 cut(s) 30, 261, 753
BstMBI GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
BstMWI GCNNNNNNNGC 3 cut(s) 14, 29, 400
BstNI CCWGG 2 cut(s) 59, 1023
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 4 cut(s) 57, 413, 961, 1021
BstSFI CTRYAG 2 cut(s) 770, 1104
BstSLI GKGCMC 1 cut(s) 437
BstV1I GCAGC 2 cut(s) 756, 887
BstV2I GAAGAC 1 cut(s) 1209
BstX2I RGATCY 4 cut(s) 192, 213, 489, 597
BstYI RGATCY 4 cut(s) 192, 213, 489, 597
BsuRI GGCC 6 cut(s) 47, 378, 961, 1003, 1155, 1213
BtgI CCRYGG 2 cut(s) 272, 732
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 3 cut(s) 79, 140, 847
BtsIMutI CAGTG 1 cut(s) 1128
Cac8I GCNNGC 2 cut(s) 552, 1108
CaiI CAGNNNCTG 1 cut(s) 1130
CfoI GCGC 2 cut(s) 769, 880
Cfr10I RCCGGY 3 cut(s) 127, 550, 796
Cfr13I GGNCC 6 cut(s) 376, 499, 959, 1001, 1153, 1211
CseI GACGC 2 cut(s) 12, 98
CsiI ACCWGGT 1 cut(s) 57
Csp6I GTAC 3 cut(s) 396, 729, 794
CspAI ACCGGT 1 cut(s) 127
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 6 cut(s) 263, 273, 427, 455, 503, 626
CviQI GTAC 3 cut(s) 396, 729, 794
DdeI CTNAG 4 cut(s) 120, 380, 483, 860
DpnI GATC 8 cut(s) 80, 87, 194, 215, 453, 491, 539, 599
DpnII GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 5 cut(s) 328, 529, 809, 866, 933
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 499
Eco72I CACGTG 1 cut(s) 1163
Eco88I CYCGRG 1 cut(s) 932
EcoRII CCWGG 2 cut(s) 57, 1021
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 5 cut(s) 328, 529, 809, 866, 933
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 2 cut(s) 30, 753
FaeI CATG 6 cut(s) 266, 276, 430, 458, 506, 629
FaqI GGGAC 2 cut(s) 865, 1106
FatI CATG 6 cut(s) 262, 272, 426, 454, 502, 625
FauI CCCGC 3 cut(s) 62, 841, 886
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 8 cut(s) 6, 18, 21, 153, 512, 770, 846, 876
FokI GGATG 3 cut(s) 86, 127, 854
FriOI GRGCYC 5 cut(s) 328, 529, 809, 866, 933
Fsp4HI GCNGC 8 cut(s) 6, 18, 21, 153, 512, 770, 846, 876
FspBI CTAG 2 cut(s) 1035, 1252
GlaI GCGC 2 cut(s) 768, 879
GluI GCNGC 8 cut(s) 6, 18, 21, 153, 512, 770, 846, 876
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 4 cut(s) 374, 590, 651, 831
HaeII RGCGCY 2 cut(s) 770, 881
HaeIII GGCC 6 cut(s) 47, 378, 961, 1003, 1155, 1213
HapII CCGG 6 cut(s) 128, 162, 415, 551, 797, 962
HgaI GACGC 2 cut(s) 12, 98
HhaI GCGC 2 cut(s) 769, 880
Hin1I GRCGYC 2 cut(s) 23, 109
Hin1II CATG 6 cut(s) 266, 276, 430, 458, 506, 629
Hin6I GCGC 2 cut(s) 767, 878
HinP1I GCGC 2 cut(s) 767, 878
HincII GTYRAC 2 cut(s) 921, 939
HindII GTYRAC 2 cut(s) 921, 939
HinfI GANTC 3 cut(s) 406, 519, 787
HpaII CCGG 6 cut(s) 128, 162, 415, 551, 797, 962
HphI GGTGA 5 cut(s) 382, 403, 613, 667, 1210
Hpy166II GTNNAC 4 cut(s) 55, 921, 939, 1188
Hpy188I TCNGA 7 cut(s) 40, 85, 192, 486, 531, 1173, 1222
Hpy188III TCNNGA 6 cut(s) 162, 353, 752, 810, 1061, 1244
Hpy8I GTNNAC 4 cut(s) 55, 921, 939, 1188
Hpy99I CGWCG 4 cut(s) 694, 745, 748, 1118
HpyAV CCTTC 8 cut(s) 154, 439, 466, 652, 986, 1144, 1195, 1247
HpyCH4III ACNGT 4 cut(s) 317, 400, 733, 741
HpyCH4IV ACGT 2 cut(s) 1162, 1233
HpyCH4V TGCA 7 cut(s) 346, 403, 466, 603, 772, 820, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 29, 400
HpyF3I CTNAG 4 cut(s) 120, 380, 483, 860
HpySE526I ACGT 2 cut(s) 1162, 1233
Hsp92I GRCGYC 2 cut(s) 23, 109
Hsp92II CATG 6 cut(s) 266, 276, 430, 458, 506, 629
HspAI GCGC 2 cut(s) 767, 878
Kpn2I TCCGGA 1 cut(s) 161
KpnI GGTACC 2 cut(s) 732, 797
KroI GCCGGC 1 cut(s) 550
KroNI GCCGGC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
LmnI GCTCC 5 cut(s) 235, 343, 812, 856, 1225
Lsp1109I GCAGC 2 cut(s) 756, 887
LweI GCATC 2 cut(s) 282, 832
MabI ACCWGGT 1 cut(s) 57
MaeI CTAG 2 cut(s) 1035, 1252
MaeII ACGT 2 cut(s) 1162, 1233
MaeIII GTNAC 3 cut(s) 370, 641, 1126
MalI GATC 8 cut(s) 80, 87, 194, 215, 453, 491, 539, 599
MboI GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
MboII GAAGA 6 cut(s) 208, 212, 251, 610, 1159, 1209
MflI RGATCY 4 cut(s) 192, 213, 489, 597
MhlI GDGCHC 6 cut(s) 328, 437, 529, 809, 866, 933
MluCI AATT 4 cut(s) 227, 286, 904, 911
MlyI GAGTC 2 cut(s) 400, 528
MmeI TCCRAC 3 cut(s) 18, 958, 1151
MreI CGCCGGCG 1 cut(s) 550
MroI TCCGGA 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 550
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 6 cut(s) 128, 162, 415, 551, 797, 962
MspR9I CCNGG 4 cut(s) 59, 415, 963, 1023
MvaI CCWGG 2 cut(s) 59, 1023
MwoI GCNNNNNNNGC 3 cut(s) 14, 29, 400
NaeI GCCGGC 1 cut(s) 552
NciI CCSGG 2 cut(s) 415, 963
NcoI CCATGG 1 cut(s) 272
NdeII GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
NgoMIV GCCGGC 1 cut(s) 550
NlaIII CATG 6 cut(s) 266, 276, 430, 458, 506, 629
NlaIV GGNNCC 9 cut(s) 194, 339, 491, 730, 738, 795, 814, 898, 1212
NmeAIII GCCGAG 1 cut(s) 906
NmuCI GTSAC 3 cut(s) 370, 641, 1126
NspI RCATGY 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 440
PciI ACATGT 1 cut(s) 426
PdiI GCCGGC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 787
PflFI GACNNNGTC 1 cut(s) 778
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 8 cut(s) 7, 19, 22, 154, 513, 771, 847, 877
PleI GAGTC 2 cut(s) 400, 527
PmaCI CACGTG 1 cut(s) 1163
PmlI CACGTG 1 cut(s) 1163
PpsI GAGTC 2 cut(s) 400, 527
Ppu21I YACGTR 1 cut(s) 1163
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 57, 1021
PspCI CACGTG 1 cut(s) 1163
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 57, 1021
PspN4I GGNNCC 9 cut(s) 194, 339, 491, 730, 738, 795, 814, 898, 1212
PspPI GGNCC 6 cut(s) 376, 499, 959, 1001, 1153, 1211
PstI CTGCAG 2 cut(s) 774, 1108
PstNI CAGNNNCTG 1 cut(s) 1130
PsuI RGATCY 4 cut(s) 192, 213, 489, 597
PsyI GACNNNGTC 1 cut(s) 778
RsaI GTAC 3 cut(s) 397, 730, 795
RsaNI GTAC 3 cut(s) 396, 729, 794
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 8 cut(s) 6, 18, 21, 153, 512, 770, 846, 876
Sau3AI GATC 8 cut(s) 78, 85, 192, 213, 451, 489, 537, 597
Sau96I GGNCC 6 cut(s) 376, 499, 959, 1001, 1153, 1211
SchI GAGTC 2 cut(s) 400, 528
ScrFI CCNGG 4 cut(s) 59, 415, 963, 1023
SduI GDGCHC 6 cut(s) 328, 437, 529, 809, 866, 933
SexAI ACCWGGT 1 cut(s) 57
SfaNI GCATC 2 cut(s) 282, 832
SfcI CTRYAG 2 cut(s) 770, 1104
SgrAI CRCCGGYG 1 cut(s) 550
SinI GGWCC 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 1242
SmoI CTYRAG 1 cut(s) 1242
Sse9I AATT 4 cut(s) 227, 286, 904, 911
SspMI CTAG 2 cut(s) 1035, 1252
StyD4I CCNGG 4 cut(s) 57, 413, 961, 1021
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 4 cut(s) 317, 400, 733, 741
TaiI ACGT 2 cut(s) 1165, 1236
TaqI TCGA 4 cut(s) 290, 592, 692, 1116
TaqII GACCGA 1 cut(s) 660
TasI AATT 4 cut(s) 227, 286, 904, 911
TauI GCSGC 6 cut(s) 8, 20, 23, 155, 514, 848
TfiI GAWTC 1 cut(s) 787
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 1135
TseFI GTSAC 3 cut(s) 370, 641, 1126
TseI GCWGC 2 cut(s) 769, 875
Tsp45I GTSAC 3 cut(s) 370, 641, 1126
TspDTI ATGAA 2 cut(s) 251, 597
TspGWI ACGGA 4 cut(s) 78, 185, 482, 869
TspRI CASTG 1 cut(s) 1135
Tth111I GACNNNGTC 1 cut(s) 778
VpaK11BI GGWCC 1 cut(s) 499
XceI RCATGY 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XspI CTAG 2 cut(s) 1035, 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.