Rmu_sc0007005.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007005.1
OG0000123
Physical Location & Seq
Forward (+)
14440 .. 15885
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007005.1_g000002.1.cds

Sequence Viewer

Length: 1446 bp
atggcggcgaaggaggctatcgtgcacctacttgggggcgaggatgcaatccaagatccttttttctatgtatgtggccggttgctctcccaaaaacgggtgttgcttccgtcgttttcggcggctatttccggtatctggggtttgaaagagcgggttttgatccgtgaggaggaaggagggatctttgtctttcaattcaaggagcaggagacgaaggatcacgtcctcaacggcggcccttggttttttaacaattcaatgcttctcttggcggactatgatggtctccgggatctgacagaggttccgctgaattcaatggaggtttgggtggcggtgaaaggtctgtgcgtggctatgcgtaatgcccgtgccctaaccttacttgggaactccttggggcgctttgtcaggtacgaccaaggtgcgttgcagaggaaggatccagtgcaaaggctccgggttgtgcacgacgtacgtcgccgtgtatgggctcgacgtaagtactcgttttcggcagcgatggcggtggacttagagttgaggtacgagaaatgccatggtatctgtcggggctgcggcttctttgaccactgtcgccgtgtatgggctcgatgtaagtactcgttttcggcagcgatggctgtggacttggagttgagatacgagaaatgccatggtatctgtcggggctgcggcttctttgaccacgggctgggttgctgtgacaatgccttgacggcggtcatggagtcaggagatgggtcgggctacactcctccagcgttggcaacaacgttggtggctgttgatgtggccggaattgagtcgcccggccggtctgcgaggctgctggacgttgggctgggtccggaaggctggacggaggaagctagggcgactgggtcggtgacgtcgggatctgttgtggagccagcggctgtcccgagattttcggctggaaacctaggtttgaagttaggatttcctgttgggccgggtggcagcgggcctgaaggggaagttgggctgactctgggcctgggtggtgaatgtgatgacctgatgaatgagagtgtgggtgggccagctgcacaggggccagctgcacagggaccagctgtacatgagctagttgcaaatgggccaagaactgatgctgtttatcccaaaattttggggactcgcaaatggtgccatggtgagtggcatatggagaagcggaaaaaaccaaccttggcggagataccccatgagtttcatcttggtgaacttgtggaggtcccagtgactgttgggaagactccaaagaagaagggtcggcccaggggtagtcgtaaagaaaacaagaggatcaacctgatgccgaggttgttggatgctgaaaagcctgatgcaggtactagctctgacccccaggggtcggagaaggtacatgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

481

Amino Acids

52.29

Weight (kDa)

8.32

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 920
Acc36I ACCTGC 1 cut(s) 1391
AccB1I GGYRCC 1 cut(s) 1197
AccB7I CCANNNNNTGG 1 cut(s) 718
AccBSI CCGCTC 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 874
AclI AACGTT 1 cut(s) 800
AclWI GGATC 9 cut(s) 50, 157, 191, 228, 303, 440, 453, 931, 1364
AcoI YGGCCR 3 cut(s) 76, 819, 838
AcsI RAATTY 2 cut(s) 316, 1176
AcuI CTGAAG 1 cut(s) 1038
AcyI GRCGYC 1 cut(s) 917
AfaI GTAC 8 cut(s) 419, 480, 509, 551, 626, 1128, 1405, 1437
AflIII ACRYGT 1 cut(s) 1438
AgsI TTSAA 6 cut(s) 148, 197, 202, 261, 321, 979
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 1044, 1328, 1419
AjuI GAANNNNNNNTTGG 2 cut(s) 1011, 1043
AluBI AGCT 6 cut(s) 896, 1094, 1109, 1124, 1135, 1410
AluI AGCT 6 cut(s) 896, 1094, 1109, 1124, 1135, 1410
Alw21I GWGCWC 2 cut(s) 27, 474
Alw26I GTCTC 2 cut(s) 206, 293
Alw44I GTGCAC 2 cut(s) 23, 470
AlwI GGATC 9 cut(s) 50, 157, 191, 228, 303, 440, 453, 931, 1364
AlwNI CAGNNNCTG 2 cut(s) 944, 1295
Ama87I CYCGRG 1 cut(s) 949
Aor13HI TCCGGA 1 cut(s) 874
ApaLI GTGCAC 2 cut(s) 23, 470
ApeKI GCWGC 8 cut(s) 521, 579, 638, 696, 853, 1008, 1094, 1109
ApoI RAATTY 2 cut(s) 316, 1176
AspA2I CCTAGG 1 cut(s) 970
AspLEI GCGC 1 cut(s) 408
AsuC2I CCSGG 4 cut(s) 293, 464, 837, 1002
AsuHPI GGTGA 5 cut(s) 352, 925, 1064, 1217, 1283
AvaI CYCGRG 1 cut(s) 949
AvaII GGWCC 3 cut(s) 872, 1118, 1285
AvrII CCTAGG 1 cut(s) 970
BaeGI GKGCMC 3 cut(s) 27, 379, 474
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 1197
BanII GRGCYC 2 cut(s) 499, 616
BbsI GAAGAC 1 cut(s) 1310
Bbv12I GWGCWC 2 cut(s) 27, 474
BbvI GCAGC 8 cut(s) 533, 566, 650, 683, 840, 1020, 1081, 1096
BccI CCATC 4 cut(s) 278, 520, 637, 758
BceAI ACGGC 4 cut(s) 250, 471, 588, 759
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 1046, 1330, 1421
BcnI CCSGG 4 cut(s) 293, 464, 837, 1002
BcoDI GTCTC 2 cut(s) 206, 293
BfaI CTAG 5 cut(s) 897, 971, 1136, 1407, 1444
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 1391
BglI GCCNNNNNGGC 1 cut(s) 743
BlnI CCTAGG 1 cut(s) 970
BmcAI AGTACT 2 cut(s) 509, 626
Bme1390I CCNGG 7 cut(s) 293, 464, 837, 1002, 1046, 1330, 1421
Bme18I GGWCC 3 cut(s) 872, 1118, 1285
BmeT110I CYCGRG 1 cut(s) 949
BmgBI CACGTC 1 cut(s) 226
BmiI GGNNCC 9 cut(s) 309, 447, 461, 873, 936, 1104, 1119, 1199, 1287
BmrFI CCNGG 7 cut(s) 293, 464, 837, 1002, 1046, 1330, 1421
BmrI ACTGGG 2 cut(s) 915, 1283
BmsI GCATC 5 cut(s) 34, 1150, 1356, 1372, 1387
BmuI ACTGGG 2 cut(s) 915, 1283
BoxI GACNNNNGTC 3 cut(s) 480, 597, 746
BpiI GAAGAC 1 cut(s) 1310
BpmI CTGGAG 1 cut(s) 768
BpuMI CCSGG 4 cut(s) 293, 464, 837, 1002
BsaHI GRCGYC 1 cut(s) 917
BsaI GGTCTC 1 cut(s) 293
BsaWI WCCGGW 2 cut(s) 131, 874
Bse118I RCCGGY 2 cut(s) 78, 840
Bse1I ACTGG 3 cut(s) 449, 910, 1289
BseAI TCCGGA 1 cut(s) 874
BseBI CCWGG 3 cut(s) 1046, 1330, 1421
BseGI GGATG 2 cut(s) 49, 1387
BseNI ACTGG 3 cut(s) 449, 910, 1289
BseRI GAGGAG 2 cut(s) 185, 771
BseSI GKGCMC 3 cut(s) 27, 379, 474
BseX3I CGGCCG 1 cut(s) 838
BseXI GCAGC 8 cut(s) 533, 566, 650, 683, 840, 1020, 1081, 1096
BseYI CCCAGC 2 cut(s) 718, 868
BsgI GTGCAG 2 cut(s) 1080, 1095
Bsh1285I CGRYCG 1 cut(s) 841
BshNI GGYRCC 1 cut(s) 1197
BsiEI CGRYCG 1 cut(s) 841
BsiHKAI GWGCWC 2 cut(s) 27, 474
BsiHKCI CYCGRG 1 cut(s) 949
BsiSI CCGG 9 cut(s) 79, 132, 292, 463, 822, 837, 841, 875, 1001
BsiWI CGTACG 1 cut(s) 478
BslFI GGGAC 4 cut(s) 932, 1131, 1198, 1271
BsmAI GTCTC 2 cut(s) 206, 293
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 4 cut(s) 932, 1131, 1198, 1271
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 949
Bsp1286I GDGCHC 5 cut(s) 27, 379, 474, 499, 616
Bsp13I TCCGGA 1 cut(s) 874
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
Bsp19I CCATGG 3 cut(s) 562, 679, 1201
BspEI TCCGGA 1 cut(s) 874
BspLI GGNNCC 9 cut(s) 309, 447, 461, 873, 936, 1104, 1119, 1199, 1287
BspMI ACCTGC 1 cut(s) 1391
BspPI GGATC 9 cut(s) 50, 157, 191, 228, 303, 440, 453, 931, 1364
BspT107I GGYRCC 1 cut(s) 1197
BspTNI GGTCTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 154
BsrFI RCCGGY 2 cut(s) 78, 840
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 3 cut(s) 449, 910, 1289
BssAI RCCGGY 2 cut(s) 78, 840
BssMI GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
BssNI GRCGYC 1 cut(s) 917
BssT1I CCWWGG 8 cut(s) 242, 399, 424, 562, 679, 970, 1201, 1239
Bst2UI CCWGG 3 cut(s) 1046, 1330, 1421
Bst4CI ACNGT 2 cut(s) 599, 1297
BstACI GRCGYC 1 cut(s) 917
BstAPI GCANNNNNTGC 1 cut(s) 1197
BstAUI TGTACA 1 cut(s) 1126
BstC8I GCNNGC 4 cut(s) 939, 1013, 1092, 1107
BstDEI CTNAG 1 cut(s) 538
BstDSI CCRYGG 4 cut(s) 562, 679, 712, 1201
BstENI CCTNNNNNAGG 1 cut(s) 1398
BstF5I GGATG 2 cut(s) 49, 1387
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 8 cut(s) 58, 165, 186, 223, 298, 448, 926, 1359
BstMAI GTCTC 2 cut(s) 206, 293
BstMBI GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
BstMCI CGRYCG 1 cut(s) 841
BstMWI GCNNNNNNNGC 5 cut(s) 14, 527, 644, 743, 1197
BstNI CCWGG 3 cut(s) 1046, 1330, 1421
BstNSI RCATGY 1 cut(s) 1442
BstPAI GACNNNNGTC 3 cut(s) 480, 597, 746
BstSCI CCNGG 7 cut(s) 291, 462, 835, 1000, 1044, 1328, 1419
BstSLI GKGCMC 3 cut(s) 27, 379, 474
BstV1I GCAGC 8 cut(s) 533, 566, 650, 683, 840, 1020, 1081, 1096
BstV2I GAAGAC 1 cut(s) 1310
BstX2I RGATCY 5 cut(s) 55, 183, 295, 445, 923
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstYI RGATCY 5 cut(s) 55, 183, 295, 445, 923
BstZI CGGCCG 1 cut(s) 838
BtgI CCRYGG 4 cut(s) 562, 679, 712, 1201
BtgZI GCGATG 2 cut(s) 539, 656
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 49, 1387
BtsIMutI CAGTG 3 cut(s) 456, 595, 1296
BveI ACCTGC 1 cut(s) 1391
Cac8I GCNNGC 4 cut(s) 939, 1013, 1092, 1107
CaiI CAGNNNCTG 2 cut(s) 944, 1295
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 2 cut(s) 78, 840
Csp6I GTAC 8 cut(s) 418, 479, 508, 550, 625, 1127, 1404, 1436
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 7 cut(s) 563, 680, 751, 1130, 1202, 1256, 1439
CviQI GTAC 8 cut(s) 418, 479, 508, 550, 625, 1127, 1404, 1436
DdeI CTNAG 1 cut(s) 538
DpnI GATC 8 cut(s) 57, 164, 185, 222, 297, 447, 925, 1358
DpnII GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
EaeI YGGCCR 3 cut(s) 76, 819, 838
EagI CGGCCG 1 cut(s) 838
EciI GGCGGA 2 cut(s) 290, 1259
EclXI CGGCCG 1 cut(s) 838
Eco130I CCWWGG 8 cut(s) 242, 399, 424, 562, 679, 970, 1201, 1239
Eco24I GRGCYC 2 cut(s) 499, 616
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 3 cut(s) 872, 1118, 1285
Eco52I CGGCCG 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 1038
Eco88I CYCGRG 1 cut(s) 949
EcoNI CCTNNNNNAGG 1 cut(s) 1398
EcoO109I RGGNCCY 1 cut(s) 1285
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 1044, 1328, 1419
EcoT14I CCWWGG 8 cut(s) 242, 399, 424, 562, 679, 970, 1201, 1239
EcoT38I GRGCYC 2 cut(s) 499, 616
ErhI CCWWGG 8 cut(s) 242, 399, 424, 562, 679, 970, 1201, 1239
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 7 cut(s) 566, 683, 754, 1133, 1205, 1259, 1442
FaqI GGGAC 4 cut(s) 932, 1131, 1198, 1271
FatI CATG 7 cut(s) 562, 679, 750, 1129, 1201, 1255, 1438
FauI CCCGC 2 cut(s) 147, 1004
FauNDI CATATG 1 cut(s) 1215
FokI GGATG 2 cut(s) 56, 1394
FriOI GRGCYC 2 cut(s) 499, 616
FspBI CTAG 5 cut(s) 897, 971, 1136, 1407, 1444
GlaI GCGC 1 cut(s) 407
GsaI CCCAGC 2 cut(s) 722, 872
GsuI CTGGAG 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 409
HapII CCGG 9 cut(s) 79, 132, 292, 463, 822, 837, 841, 875, 1001
HhaI GCGC 1 cut(s) 408
Hin1I GRCGYC 1 cut(s) 917
Hin1II CATG 7 cut(s) 566, 683, 754, 1133, 1205, 1259, 1442
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HinfI GANTC 5 cut(s) 755, 830, 1036, 1186, 1306
HpaII CCGG 9 cut(s) 79, 132, 292, 463, 822, 837, 841, 875, 1001
HphI GGTGA 5 cut(s) 352, 925, 1064, 1217, 1283
Hpy166II GTNNAC 5 cut(s) 25, 472, 535, 652, 1274
Hpy188I TCNGA 3 cut(s) 300, 1414, 1429
Hpy188III TCNNGA 4 cut(s) 759, 875, 921, 949
Hpy8I GTNNAC 5 cut(s) 25, 472, 535, 652, 1274
Hpy99I CGWCG 5 cut(s) 115, 479, 486, 504, 922
HpyAV CCTTC 8 cut(s) 4, 170, 211, 436, 872, 1013, 1312, 1426
HpyCH4III ACNGT 2 cut(s) 599, 1297
HpyCH4IV ACGT 7 cut(s) 225, 477, 481, 502, 800, 861, 917
HpyCH4V TGCA 9 cut(s) 25, 47, 436, 454, 472, 1097, 1112, 1142, 1400
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 527, 644, 743, 1197
HpyF3I CTNAG 1 cut(s) 538
HpySE526I ACGT 7 cut(s) 225, 477, 481, 502, 800, 861, 917
Hsp92I GRCGYC 1 cut(s) 917
Hsp92II CATG 7 cut(s) 566, 683, 754, 1133, 1205, 1259, 1442
HspAI GCGC 1 cut(s) 406
Kpn2I TCCGGA 1 cut(s) 874
Kzo9I GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
LmnI GCTCC 3 cut(s) 205, 465, 934
Lsp1109I GCAGC 8 cut(s) 533, 566, 650, 683, 840, 1020, 1081, 1096
LweI GCATC 5 cut(s) 34, 1150, 1356, 1372, 1387
MaeI CTAG 5 cut(s) 897, 971, 1136, 1407, 1444
MaeII ACGT 7 cut(s) 225, 477, 481, 502, 800, 861, 917
MaeIII GTNAC 3 cut(s) 728, 913, 1291
MalI GATC 8 cut(s) 57, 164, 185, 222, 297, 447, 925, 1358
MbiI CCGCTC 1 cut(s) 154
MboI GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
MboII GAAGA 2 cut(s) 1315, 1327
MflI RGATCY 5 cut(s) 55, 183, 295, 445, 923
MhlI GDGCHC 5 cut(s) 27, 379, 474, 499, 616
MluCI AATT 5 cut(s) 197, 256, 316, 825, 1176
MlyI GAGTC 5 cut(s) 764, 839, 1030, 1180, 1300
MmeI TCCRAC 2 cut(s) 1359, 1407
MroI TCCGGA 1 cut(s) 874
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 1269
MspA1I CMGCKG 6 cut(s) 313, 941, 1011, 1094, 1109, 1124
MspI CCGG 9 cut(s) 79, 132, 292, 463, 822, 837, 841, 875, 1001
MspR9I CCNGG 7 cut(s) 293, 464, 837, 1002, 1046, 1330, 1421
MvaI CCWGG 3 cut(s) 1046, 1330, 1421
MwoI GCNNNNNNNGC 5 cut(s) 14, 527, 644, 743, 1197
NciI CCSGG 4 cut(s) 293, 464, 837, 1002
NcoI CCATGG 3 cut(s) 562, 679, 1201
NdeI CATATG 1 cut(s) 1215
NdeII GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
NlaIII CATG 7 cut(s) 566, 683, 754, 1133, 1205, 1259, 1442
NlaIV GGNNCC 9 cut(s) 309, 447, 461, 873, 936, 1104, 1119, 1199, 1287
NmeAIII GCCGAG 1 cut(s) 1395
NmuCI GTSAC 3 cut(s) 728, 913, 1291
NspI RCATGY 1 cut(s) 1442
PasI CCCWGGG 2 cut(s) 1329, 1420
PciI ACATGT 1 cut(s) 1438
Pfl23II CGTACG 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 907
PflMI CCANNNNNTGG 1 cut(s) 718
PfoI TCCNGGA 1 cut(s) 291
PleI GAGTC 5 cut(s) 763, 838, 1030, 1180, 1300
PpsI GAGTC 5 cut(s) 763, 838, 1030, 1180, 1300
PpuMI RGGWCCY 1 cut(s) 1285
PscI ACATGT 1 cut(s) 1438
PshAI GACNNNNGTC 3 cut(s) 480, 597, 746
Psp1406I AACGTT 1 cut(s) 800
Psp5II RGGWCCY 1 cut(s) 1285
Psp6I CCWGG 3 cut(s) 1044, 1328, 1419
PspFI CCCAGC 2 cut(s) 718, 868
PspGI CCWGG 3 cut(s) 1044, 1328, 1419
PspLI CGTACG 1 cut(s) 478
PspN4I GGNNCC 9 cut(s) 309, 447, 461, 873, 936, 1104, 1119, 1199, 1287
PspPPI RGGWCCY 1 cut(s) 1285
PstNI CAGNNNCTG 2 cut(s) 944, 1295
PsuI RGATCY 5 cut(s) 55, 183, 295, 445, 923
PsyI GACNNNGTC 1 cut(s) 907
PvuII CAGCTG 3 cut(s) 1094, 1109, 1124
RsaI GTAC 8 cut(s) 419, 480, 509, 551, 626, 1128, 1405, 1437
RsaNI GTAC 8 cut(s) 418, 479, 508, 550, 625, 1127, 1404, 1436
RseI CAYNNNNRTG 1 cut(s) 1269
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 8 cut(s) 55, 162, 183, 220, 295, 445, 923, 1356
ScaI AGTACT 2 cut(s) 509, 626
SchI GAGTC 5 cut(s) 764, 839, 1030, 1180, 1300
ScrFI CCNGG 7 cut(s) 293, 464, 837, 1002, 1046, 1330, 1421
SduI GDGCHC 5 cut(s) 27, 379, 474, 499, 616
SfaNI GCATC 5 cut(s) 34, 1150, 1356, 1372, 1387
SinI GGWCC 3 cut(s) 872, 1118, 1285
SmiMI CAYNNNNRTG 1 cut(s) 1269
Sse9I AATT 5 cut(s) 197, 256, 316, 825, 1176
SspMI CTAG 5 cut(s) 897, 971, 1136, 1407, 1444
StyD4I CCNGG 7 cut(s) 291, 462, 835, 1000, 1044, 1328, 1419
StyI CCWWGG 8 cut(s) 242, 399, 424, 562, 679, 970, 1201, 1239
TaaI ACNGT 2 cut(s) 599, 1297
TaiI ACGT 7 cut(s) 228, 480, 484, 505, 803, 864, 920
TaqI TCGA 2 cut(s) 499, 616
TasI AATT 5 cut(s) 197, 256, 316, 825, 1176
TatI WGTACW 3 cut(s) 507, 624, 1126
TauI GCSGC 6 cut(s) 8, 125, 240, 585, 702, 944
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 3 cut(s) 456, 602, 1296
TseFI GTSAC 3 cut(s) 728, 913, 1291
TseI GCWGC 8 cut(s) 521, 579, 638, 696, 853, 1008, 1094, 1109
Tsp45I GTSAC 3 cut(s) 728, 913, 1291
TspDTI ATGAA 2 cut(s) 1085, 1253
TspGWI ACGGA 3 cut(s) 99, 155, 902
TspRI CASTG 3 cut(s) 456, 602, 1296
Tth111I GACNNNGTC 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 718
VneI GTGCAC 2 cut(s) 23, 470
VpaK11BI GGWCC 3 cut(s) 872, 1118, 1285
XagI CCTNNNNNAGG 1 cut(s) 1398
XapI RAATTY 2 cut(s) 316, 1176
XceI RCATGY 1 cut(s) 1442
XmaJI CCTAGG 1 cut(s) 970
XspI CTAG 5 cut(s) 897, 971, 1136, 1407, 1444
ZraI GACGTC 1 cut(s) 918
ZrmI AGTACT 2 cut(s) 509, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.