Rmu_sc0005834.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005834.1
OG0000123
Physical Location & Seq
Forward (+)
27208 .. 28434
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005834.1_g000008.1.cds

Sequence Viewer

Length: 1227 bp
atggcggcagtgtctccttcatcagaggaggccgtggtgcgtctggttggtggagaggatgctatccacgattcgtttttctatctcaatggccgacttctgtccaagaaggcggtggtgcttccgtcgttctcggcggcgatctccaatatttggggagtgaaggagagagttttgatctggcaggaggaggaggacatctttgtcttccaatttaaggagatggaggtgaagaatcgagtactctctgggggtccttggttctataacaactccatgttgttgttggcagactatgacggaatctctgccctcgatacggcgccgctgcatctccttgaggtgtgggtggctgtgaaagggttacggattgcgatgctaaatgagaaagctcttaccctaatcggccgggctttgggggacttcgtgcgggttgaccaaggagcggtgctgagaaaggatcctgtccagaggatccgtgtgattcgagatgtccaccggaggatttggccgcgaaggatgtttgagttttcacctgttgtttcggtgacggtggagctgcaatatgagaaatgccataggctgtgtggggcttgcggtttcttcggccatgggggtggttcttgtgacaggagggaggcgcccttgttggcggtgccgggccgaggtgacttgaaccatggtctagactctgcacccggatcgaaagcgtctgtgggggcggtcgtggagacggaggtgctctttaaggcaccgacggagctgggttttgtgacggcgggggctggaaaggctgtggtggctgagggtggactggcatcgggggctgcaagcaatgcagctgcagttcaagaaaaaccggcgggaaaccctaattttgaattaggtttgaccgcagggttgactaggatgcaatctgggttacagtctcttgggccagaggaggggtctgatgagctttctgttgggcttgctgctgggaaaagcccagaattaggtttgggtgtgagaaagaaggtgtttaaacctagtttggcatttatacctccggaatttcaccttggtgagttggtggaggttccaatttcgatggggatagctcaaaagaagaagggtcgtccgtatgtacgccgagcaaaacgtatattatctccaaaagcggaaggtaataatgcaggtgtggatttatgctccaactcgaatgagaaggagctatttcttggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

408

Amino Acids

43.84

Weight (kDa)

8.19

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1166
AasI GACNNNNNNGTC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 1166
AccB1I GGYRCC 4 cut(s) 322, 640, 655, 751
AccB7I CCANNNNNTGG 1 cut(s) 153
AccBSI CCGCTC 1 cut(s) 446
AccII CGCG 1 cut(s) 514
AccIII TCCGGA 1 cut(s) 1048
AclWI GGATC 5 cut(s) 455, 468, 469, 482, 709
AcoI YGGCCR 4 cut(s) 91, 406, 509, 607
AcsI RAATTY 1 cut(s) 1052
AcyI GRCGYC 2 cut(s) 323, 641
AfaI GTAC 2 cut(s) 243, 1128
AfiI CCNNNNNNNGG 8 cut(s) 153, 217, 319, 415, 445, 665, 944, 995
AgsI TTSAA 3 cut(s) 676, 851, 881
AjuI GAANNNNNNNTTGG 2 cut(s) 1044, 1076
AleI CACNNNNGTG 1 cut(s) 1062
AluBI AGCT 7 cut(s) 392, 559, 763, 842, 958, 1100, 1213
AluI AGCT 7 cut(s) 392, 559, 763, 842, 958, 1100, 1213
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 3 cut(s) 18, 725, 933
AlwI GGATC 5 cut(s) 455, 468, 469, 482, 709
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 7 cut(s) 30, 91, 406, 509, 607, 661, 935
ApeKI GCWGC 6 cut(s) 328, 559, 827, 839, 842, 974
ApoI RAATTY 1 cut(s) 1052
AspLEI GCGC 2 cut(s) 325, 643
AspS9I GGNCC 3 cut(s) 254, 661, 935
AsuC2I CCSGG 3 cut(s) 410, 660, 699
AsuHPI GGTGA 6 cut(s) 241, 525, 559, 680, 1049, 1076
AvaII GGWCC 1 cut(s) 254
BamHI GGATCC 2 cut(s) 460, 474
BanI GGYRCC 4 cut(s) 322, 640, 655, 751
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 744
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 6 cut(s) 315, 546, 814, 829, 851, 961
BccI CCATC 2 cut(s) 217, 1084
BceAI ACGGC 3 cut(s) 17, 336, 792
BcgI CGANNNNNNTGC 2 cut(s) 684, 718
BcnI CCSGG 3 cut(s) 410, 660, 699
BcoDI GTCTC 3 cut(s) 18, 725, 933
BfaI CTAG 3 cut(s) 686, 906, 1029
BfmI CTRYAG 1 cut(s) 843
BfoI RGCGCY 2 cut(s) 326, 644
BfuAI ACCTGC 1 cut(s) 1166
BmcAI AGTACT 1 cut(s) 243
Bme1390I CCNGG 3 cut(s) 410, 660, 699
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 254, 661, 935
BmiI GGNNCC 8 cut(s) 255, 324, 462, 476, 642, 657, 753, 1080
BmrFI CCNGG 3 cut(s) 410, 660, 699
BmsI GCATC 5 cut(s) 49, 340, 366, 827, 900
BoxI GACNNNNGTC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 3 cut(s) 410, 660, 699
BsaHI GRCGYC 2 cut(s) 323, 641
BsaJI CCNNGG 7 cut(s) 33, 257, 439, 610, 664, 679, 1060
BsaWI WCCGGW 2 cut(s) 498, 1048
Bsc4I CCNNNNNNNGG 8 cut(s) 153, 217, 319, 415, 445, 665, 944, 995
Bse118I RCCGGY 1 cut(s) 859
Bse1I ACTGG 1 cut(s) 819
Bse3DI GCAATG 1 cut(s) 841
BseAI TCCGGA 1 cut(s) 1048
BseDI CCNNGG 7 cut(s) 33, 257, 439, 610, 664, 679, 1060
BseGI GGATG 3 cut(s) 64, 525, 915
BseLI CCNNNNNNNGG 8 cut(s) 153, 217, 319, 415, 445, 665, 944, 995
BseMI GCAATG 1 cut(s) 841
BseMII CTCAG 2 cut(s) 443, 795
BseNI ACTGG 1 cut(s) 819
BseRI GAGGAG 4 cut(s) 41, 203, 206, 956
BseX3I CGGCCG 1 cut(s) 406
BseXI GCAGC 6 cut(s) 315, 546, 814, 829, 851, 961
BseYI CCCAGC 2 cut(s) 763, 977
BsgI GTGCAG 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 514
Bsh1285I CGRYCG 2 cut(s) 409, 726
BshFI GGCC 7 cut(s) 32, 93, 408, 511, 609, 663, 937
BshNI GGYRCC 4 cut(s) 322, 640, 655, 751
BsiEI CGRYCG 2 cut(s) 409, 726
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 6 cut(s) 409, 499, 659, 699, 860, 1049
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 8 cut(s) 153, 217, 319, 415, 445, 665, 944, 995
BsmAI GTCTC 3 cut(s) 18, 725, 933
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 7 cut(s) 32, 93, 408, 511, 609, 663, 937
Bsp1286I GDGCHC 1 cut(s) 744
Bsp13I TCCGGA 1 cut(s) 1048
Bsp143I GATC 5 cut(s) 141, 177, 460, 474, 701
Bsp19I CCATGG 2 cut(s) 610, 679
BspANI GGCC 7 cut(s) 32, 93, 408, 511, 609, 663, 937
BspCNI CTCAG 2 cut(s) 444, 796
BspEI TCCGGA 1 cut(s) 1048
BspFNI CGCG 1 cut(s) 514
BspLI GGNNCC 8 cut(s) 255, 324, 462, 476, 642, 657, 753, 1080
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 1 cut(s) 1166
BspPI GGATC 5 cut(s) 455, 468, 469, 482, 709
BspT107I GGYRCC 4 cut(s) 322, 640, 655, 751
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 841
BsrFI RCCGGY 1 cut(s) 859
BsrI ACTGG 1 cut(s) 819
BssAI RCCGGY 1 cut(s) 859
BssECI CCNNGG 7 cut(s) 33, 257, 439, 610, 664, 679, 1060
BssMI GATC 5 cut(s) 141, 177, 460, 474, 701
BssNI GRCGYC 2 cut(s) 323, 641
BssT1I CCWWGG 5 cut(s) 257, 439, 610, 679, 1060
Bst4CI ACNGT 2 cut(s) 553, 927
BstACI GRCGYC 2 cut(s) 323, 641
BstAPI GCANNNNNTGC 1 cut(s) 836
BstC8I GCNNGC 3 cut(s) 595, 832, 972
BstDEI CTNAG 2 cut(s) 452, 804
BstDSI CCRYGG 3 cut(s) 33, 610, 679
BstF5I GGATG 3 cut(s) 64, 525, 915
BstFNI CGCG 1 cut(s) 514
BstH2I RGCGCY 2 cut(s) 326, 644
BstHHI GCGC 2 cut(s) 325, 643
BstKTI GATC 5 cut(s) 144, 180, 463, 477, 704
BstMAI GTCTC 3 cut(s) 18, 725, 933
BstMBI GATC 5 cut(s) 141, 177, 460, 474, 701
BstMCI CGRYCG 2 cut(s) 409, 726
BstMWI GCNNNNNNNGC 4 cut(s) 791, 800, 824, 836
BstPAI GACNNNNGTC 1 cut(s) 100
BstSCI CCNGG 3 cut(s) 408, 658, 697
BstSFI CTRYAG 1 cut(s) 843
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 6 cut(s) 315, 546, 814, 829, 851, 961
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 460, 474
BstXI CCANNNNNNTGG 1 cut(s) 617
BstYI RGATCY 2 cut(s) 460, 474
BstZI CGGCCG 1 cut(s) 406
BsuRI GGCC 7 cut(s) 32, 93, 408, 511, 609, 663, 937
BtgI CCRYGG 3 cut(s) 33, 610, 679
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 3 cut(s) 64, 525, 915
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 1166
Cac8I GCNNGC 3 cut(s) 595, 832, 972
CfoI GCGC 2 cut(s) 325, 643
Cfr10I RCCGGY 1 cut(s) 859
Cfr13I GGNCC 3 cut(s) 254, 661, 935
CseI GACGC 2 cut(s) 29, 699
Csp6I GTAC 2 cut(s) 242, 1127
CviAII CATG 3 cut(s) 277, 611, 680
CviQI GTAC 2 cut(s) 242, 1127
DdeI CTNAG 2 cut(s) 452, 804
DinI GGCGCC 2 cut(s) 324, 642
DpnI GATC 5 cut(s) 143, 179, 462, 476, 703
DpnII GATC 5 cut(s) 141, 177, 460, 474, 701
DraI TTTAAA 1 cut(s) 1024
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 4 cut(s) 91, 406, 509, 607
EagI CGGCCG 1 cut(s) 406
EclXI CGGCCG 1 cut(s) 406
Eco130I CCWWGG 5 cut(s) 257, 439, 610, 679, 1060
Eco47I GGWCC 1 cut(s) 254
Eco52I CGGCCG 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 254
EcoT14I CCWWGG 5 cut(s) 257, 439, 610, 679, 1060
EgeI GGCGCC 2 cut(s) 324, 642
EheI GGCGCC 2 cut(s) 324, 642
ErhI CCWWGG 5 cut(s) 257, 439, 610, 679, 1060
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 3 cut(s) 280, 614, 683
FaqI GGGAC 1 cut(s) 434
FatI CATG 3 cut(s) 276, 610, 679
FauI CCCGC 3 cut(s) 423, 772, 856
FokI GGATG 3 cut(s) 71, 532, 922
FspBI CTAG 3 cut(s) 686, 906, 1029
GlaI GCGC 2 cut(s) 324, 642
GsaI CCCAGC 2 cut(s) 767, 981
HaeII RGCGCY 2 cut(s) 326, 644
HaeIII GGCC 7 cut(s) 32, 93, 408, 511, 609, 663, 937
HapII CCGG 6 cut(s) 409, 499, 659, 699, 860, 1049
HgaI GACGC 2 cut(s) 29, 699
HhaI GCGC 2 cut(s) 325, 643
Hin1I GRCGYC 2 cut(s) 323, 641
Hin1II CATG 3 cut(s) 280, 614, 683
Hin6I GCGC 2 cut(s) 323, 641
HinP1I GCGC 2 cut(s) 323, 641
HincII GTYRAC 2 cut(s) 436, 903
HindII GTYRAC 2 cut(s) 436, 903
HinfI GANTC 5 cut(s) 71, 235, 303, 484, 689
HpaII CCGG 6 cut(s) 409, 499, 659, 699, 860, 1049
HphI GGTGA 6 cut(s) 241, 525, 559, 680, 1049, 1076
Hpy166II GTNNAC 4 cut(s) 436, 496, 812, 903
Hpy188I TCNGA 2 cut(s) 25, 952
Hpy188III TCNNGA 5 cut(s) 469, 488, 686, 851, 1049
Hpy8I GTNNAC 4 cut(s) 436, 496, 812, 903
Hpy99I CGWCG 2 cut(s) 130, 760
HpyAV CCTTC 8 cut(s) 27, 103, 157, 510, 1009, 1105, 1157, 1201
HpyCH4III ACNGT 2 cut(s) 553, 927
HpyCH4IV ACGT 1 cut(s) 1141
HpyCH4V TGCA 8 cut(s) 331, 562, 695, 830, 839, 845, 913, 1175
HpyF10VI GCNNNNNNNGC 4 cut(s) 791, 800, 824, 836
HpyF3I CTNAG 2 cut(s) 452, 804
HpySE526I ACGT 1 cut(s) 1141
Hsp92I GRCGYC 2 cut(s) 323, 641
Hsp92II CATG 3 cut(s) 280, 614, 683
HspAI GCGC 2 cut(s) 323, 641
KasI GGCGCC 2 cut(s) 322, 640
Kpn2I TCCGGA 1 cut(s) 1048
Kzo9I GATC 5 cut(s) 141, 177, 460, 474, 701
LmnI GCTCC 5 cut(s) 443, 556, 760, 1196, 1210
Lsp1109I GCAGC 6 cut(s) 315, 546, 814, 829, 851, 961
LweI GCATC 5 cut(s) 49, 340, 366, 827, 900
MaeI CTAG 3 cut(s) 686, 906, 1029
MaeII ACGT 1 cut(s) 1141
MaeIII GTNAC 6 cut(s) 363, 547, 626, 668, 772, 921
MalI GATC 5 cut(s) 143, 179, 462, 476, 703
MbiI CCGCTC 1 cut(s) 446
MboI GATC 5 cut(s) 141, 177, 460, 474, 701
MboII GAAGA 4 cut(s) 199, 244, 595, 1120
MflI RGATCY 2 cut(s) 460, 474
MhlI GDGCHC 1 cut(s) 744
MluCI AATT 6 cut(s) 212, 874, 881, 992, 1052, 1083
Mly113I GGCGCC 2 cut(s) 323, 641
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 1 cut(s) 1218
MroI TCCGGA 1 cut(s) 1048
MseI TTAA 4 cut(s) 216, 747, 1023, 1225
MslI CAYNNNNRTG 2 cut(s) 615, 1062
MspA1I CMGCKG 2 cut(s) 328, 842
MspI CCGG 6 cut(s) 409, 499, 659, 699, 860, 1049
MspR9I CCNGG 3 cut(s) 410, 660, 699
MssI GTTTAAAC 1 cut(s) 1024
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 4 cut(s) 791, 800, 824, 836
NarI GGCGCC 2 cut(s) 323, 641
NciI CCSGG 3 cut(s) 410, 660, 699
NcoI CCATGG 2 cut(s) 610, 679
NdeII GATC 5 cut(s) 141, 177, 460, 474, 701
NlaIII CATG 3 cut(s) 280, 614, 683
NlaIV GGNNCC 8 cut(s) 255, 324, 462, 476, 642, 657, 753, 1080
NmeAIII GCCGAG 3 cut(s) 113, 689, 1157
NmuCI GTSAC 4 cut(s) 547, 626, 668, 772
OliI CACNNNNGTG 1 cut(s) 1062
PaqCI CACCTGC 1 cut(s) 1166
PfeI GAWTC 4 cut(s) 71, 235, 303, 484
PflMI CCANNNNNTGG 1 cut(s) 153
PleI GAGTC 1 cut(s) 683
PluTI GGCGCC 2 cut(s) 326, 644
PmeI GTTTAAAC 1 cut(s) 1024
PpsI GAGTC 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 254
PshAI GACNNNNGTC 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 254
PspFI CCCAGC 2 cut(s) 763, 977
PspN4I GGNNCC 8 cut(s) 255, 324, 462, 476, 642, 657, 753, 1080
PspPI GGNCC 3 cut(s) 254, 661, 935
PspPPI RGGWCCY 1 cut(s) 254
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 2 cut(s) 460, 474
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 2 cut(s) 243, 1128
RsaNI GTAC 2 cut(s) 242, 1127
RseI CAYNNNNRTG 2 cut(s) 615, 1062
SaqAI TTAA 4 cut(s) 216, 747, 1023, 1225
Sau3AI GATC 5 cut(s) 141, 177, 460, 474, 701
Sau96I GGNCC 3 cut(s) 254, 661, 935
ScaI AGTACT 1 cut(s) 243
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 3 cut(s) 410, 660, 699
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 5 cut(s) 49, 340, 366, 827, 900
SfcI CTRYAG 1 cut(s) 843
SfoI GGCGCC 2 cut(s) 324, 642
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 615, 1062
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 6 cut(s) 212, 874, 881, 992, 1052, 1083
SspDI GGCGCC 2 cut(s) 322, 640
SspI AATATT 1 cut(s) 151
SspMI CTAG 3 cut(s) 686, 906, 1029
StyD4I CCNGG 3 cut(s) 408, 658, 697
StyI CCWWGG 5 cut(s) 257, 439, 610, 679, 1060
TaaI ACNGT 2 cut(s) 553, 927
TaiI ACGT 1 cut(s) 1144
TaqI TCGA 6 cut(s) 238, 315, 487, 704, 1088, 1199
TasI AATT 6 cut(s) 212, 874, 881, 992, 1052, 1083
TatI WGTACW 1 cut(s) 241
TauI GCSGC 4 cut(s) 8, 140, 328, 514
TfiI GAWTC 4 cut(s) 71, 235, 303, 484
Tru1I TTAA 4 cut(s) 216, 747, 1023, 1225
Tru9I TTAA 4 cut(s) 216, 747, 1023, 1225
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 4 cut(s) 547, 626, 668, 772
TseI GCWGC 6 cut(s) 328, 559, 827, 839, 842, 974
Tsp45I GTSAC 4 cut(s) 547, 626, 668, 772
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 7 cut(s) 114, 315, 382, 467, 749, 773, 1110
TspRI CASTG 1 cut(s) 15
Van91I CCANNNNNTGG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 1052
XbaI TCTAGA 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 3 cut(s) 112, 283, 584
XspI CTAG 3 cut(s) 686, 906, 1029
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.