Rroxscaffold_2G00130500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000123
Physical Location & Seq
Forward (+)
66675205 .. 66676402
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130500.1

Sequence Viewer

Length: 480 bp
ATGACATCGCGGTCCGTTCGAATGCAAGGTTCTTCGCTGGATACCGACGGACCGCGGCTTGAAAATGGTTGCGGCGGCTGTTGGATTTGCCCCGAGCGGGGAGCAGACAACAAGTTTCCGTCGCCGAGTGCTATGGTGGAAGTTCCGCCATCATCTCTCGTTTTGAGGGAGTCACCGGAGTACGGTTTGGCGGAGATGGCGCCGGTGTTGGGCTACGGTGCCGTGCAAGTGGTCGACGCAATGCAAGAGGCGATCGGGACGAAGCGGGTTCCCACTGGAGGAGTGGCTCGAGGATGGGAAGTGTCCGAAGCTTTCGATGGCTTAGTTGAGGTCCAAGTAACCGATGGGAAGCTTCCAAATAAGAAGGGCAGACCTCATGGTCGTCGGAACAAGCCCAAGCTTGTGTCTACACCCACTTCGGTGGTGGATGCTCGATGGCCATCTTCGGAGGAGCTGAATGTCCTATCTCAAGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.98

Weight (kDa)

5.51

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 10, 378
AccB1I GGYRCC 2 cut(s) 199, 218
AccBSI CCGCTC 1 cut(s) 97
AccI GTMKAC 2 cut(s) 234, 407
AccII CGCG 2 cut(s) 10, 55
AciI CCGC 9 cut(s) 10, 53, 55, 72, 75, 97, 146, 191, 265
AcoI YGGCCR 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 5 cut(s) 97, 98, 182, 209, 278
AgsI TTSAA 1 cut(s) 62
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 4 cut(s) 311, 352, 400, 454
AluI AGCT 4 cut(s) 311, 352, 400, 454
Ama87I CYCGRG 2 cut(s) 92, 288
AoxI GGCC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 3 cut(s) 12, 50, 331
AsuHPI GGTGA 1 cut(s) 165
AsuII TTCGAA 1 cut(s) 19
AvaI CYCGRG 2 cut(s) 92, 288
AvaII GGWCC 3 cut(s) 12, 50, 331
BalI TGGCCA 1 cut(s) 439
BanI GGYRCC 2 cut(s) 199, 218
BccI CCATC 7 cut(s) 157, 190, 288, 311, 338, 429, 448
BceAI ACGGC 1 cut(s) 206
BciVI GTATCC 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 203
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 3 cut(s) 56, 73, 76
BlsI GCNGC 3 cut(s) 57, 74, 77
Bme18I GGWCC 3 cut(s) 12, 50, 331
BmeT110I CYCGRG 2 cut(s) 92, 288
BmgT120I GGNCC 3 cut(s) 12, 50, 331
BmiI GGNNCC 3 cut(s) 201, 220, 270
BmsI GCATC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 439
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 98, 182, 209, 278
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 299, 433
BseJI GATNNNNATC 1 cut(s) 439
BseLI CCNNNNNNNGG 5 cut(s) 97, 98, 182, 209, 278
BseMI GCAATG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 2 cut(s) 294, 464
Bsh1236I CGCG 2 cut(s) 10, 55
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 439
BshNI GGYRCC 2 cut(s) 199, 218
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 2 cut(s) 92, 288
BsiSI CCGG 2 cut(s) 176, 203
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 5 cut(s) 97, 98, 182, 209, 278
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 1 cut(s) 439
BsoBI CYCGRG 2 cut(s) 92, 288
Bsp119I TTCGAA 1 cut(s) 19
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 9 cut(s) 10, 53, 55, 72, 75, 97, 146, 191, 265
BspANI GGCC 1 cut(s) 439
BspFNI CGCG 2 cut(s) 10, 55
BspLI GGNNCC 3 cut(s) 201, 220, 270
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 2 cut(s) 199, 218
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 185, 218
BstACI GRCGYC 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 322
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 299, 433
BstFNI CGCG 2 cut(s) 10, 55
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstUI CGCG 2 cut(s) 10, 55
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 299, 433
BtsIMutI CAGTG 1 cut(s) 273
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 12, 50, 331
Cfr42I CCGCGG 1 cut(s) 56
CpoI CGGWCCG 2 cut(s) 12, 50
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 181
CspI CGGWCCG 2 cut(s) 12, 50
CviAII CATG 1 cut(s) 377
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 322
DinI GGCGCC 1 cut(s) 201
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DrdI GACNNNNNNGTC 2 cut(s) 10, 378
DseDI GACNNNNNNGTC 2 cut(s) 10, 378
EaeI YGGCCR 1 cut(s) 437
EciI GGCGGA 2 cut(s) 135, 206
Eco47I GGWCC 3 cut(s) 12, 50, 331
Eco88I CYCGRG 2 cut(s) 92, 288
EgeI GGCGCC 1 cut(s) 201
EheI GGCGCC 1 cut(s) 201
FaeI CATG 1 cut(s) 380
FaiI YATR 2 cut(s) 134, 378
FaqI GGGAC 1 cut(s) 271
FatI CATG 1 cut(s) 376
FauI CCCGC 2 cut(s) 90, 258
FblI GTMKAC 2 cut(s) 234, 407
Fnu4HI GCNGC 3 cut(s) 56, 73, 76
FokI GGATG 2 cut(s) 306, 440
Fsp4HI GCNGC 3 cut(s) 56, 73, 76
GlaI GCGC 1 cut(s) 201
GluI GCNGC 3 cut(s) 56, 73, 76
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 1 cut(s) 439
HapII CCGG 2 cut(s) 176, 203
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 380
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 3 cut(s) 309, 350, 398
HinfI GANTC 1 cut(s) 170
HpaII CCGG 2 cut(s) 176, 203
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 235, 408
Hpy188I TCNGA 3 cut(s) 307, 387, 448
Hpy188III TCNNGA 2 cut(s) 256, 470
Hpy8I GTNNAC 2 cut(s) 235, 408
Hpy99I CGWCG 4 cut(s) 50, 124, 239, 387
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 185, 218
HpyCH4V TGCA 3 cut(s) 25, 226, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 322
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 380
HspAI GCGC 1 cut(s) 200
KasI GGCGCC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 101, 451
LpnPI CCDG 4 cut(s) 23, 189, 216, 261
LweI GCATC 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 171, 337
MalI GATC 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 97
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 24, 435
MlsI TGGCCA 1 cut(s) 439
MluNI TGGCCA 1 cut(s) 439
Mly113I GGCGCC 1 cut(s) 200
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 62, 365
MnlI CCTC 8 cut(s) 159, 241, 272, 284, 322, 384, 442, 466
Mox20I TGGCCA 1 cut(s) 439
MscI TGGCCA 1 cut(s) 439
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 176, 203
Mva1269I GAATGC 1 cut(s) 27
MvnI CGCG 2 cut(s) 10, 55
MwoI GCNNNNNNNGC 1 cut(s) 197
NarI GGCGCC 1 cut(s) 200
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 380
NlaIV GGNNCC 3 cut(s) 201, 220, 270
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 171
NspV TTCGAA 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 419
PaeR7I CTCGAG 1 cut(s) 288
PctI GAATGC 1 cut(s) 27
PkrI GCNGC 3 cut(s) 57, 74, 77
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 178
PspN4I GGNNCC 3 cut(s) 201, 220, 270
PspPI GGNCC 3 cut(s) 12, 50, 331
PspXI VCTCGAGB 1 cut(s) 288
PvuI CGATCG 1 cut(s) 255
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 419
Rsr2I CGGWCCG 2 cut(s) 12, 50
RsrII CGGWCCG 2 cut(s) 12, 50
SacII CCGCGG 1 cut(s) 56
SalI GTCGAC 1 cut(s) 233
SatI GCNGC 3 cut(s) 56, 73, 76
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 3 cut(s) 12, 50, 331
SchI GAGTC 1 cut(s) 179
SetI ASST 7 cut(s) 31, 313, 333, 354, 376, 402, 456
SfaNI GCATC 1 cut(s) 418
SfoI GGCGCC 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 288
Sfr303I CCGCGG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 19
SgrAI CRCCGGYG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 56
SinI GGWCC 3 cut(s) 12, 50, 331
SlaI CTCGAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 288, 468
SmoI CTYRAG 2 cut(s) 288, 468
SsiI CCGC 9 cut(s) 10, 53, 55, 72, 75, 97, 146, 191, 265
SspDI GGCGCC 1 cut(s) 199
TaaI ACNGT 2 cut(s) 185, 218
TaqI TCGA 5 cut(s) 19, 234, 289, 315, 433
TauI GCSGC 3 cut(s) 58, 75, 78
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 171
TspGWI ACGGA 3 cut(s) 4, 63, 108
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 3 cut(s) 12, 50, 331
XcmI CCANNNNNNNNNTGG 3 cut(s) 280, 341, 421
XhoI CTCGAG 1 cut(s) 288
XmiI GTMKAC 2 cut(s) 234, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.