Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000123

Physical Location & Seq

Genomic Coordinates Forward (+)

14889954 .. 14890769

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATATGTCTAATGGTTTCTCAGTCGGGTTTGACTATGGCCACCATTTTATTCTACACCTGCTTTTGGATCCCATTCATGCAGTTCAAAAAAGCTCTAGCTGGTATAATTAGTGACGTTCTATTTCTCAGTGATATTTTGAAGCCAGAGGATCACACTGCTTGCTGCAATCTAGACCAGCTGAGTCTTCCTGTGGCTAGATTCCAGGACTTGCAGGGTTATTGTAGTACCGAAAGGAGTGGACAGGACTCGCACGAGGCTGAAACCTGCTCAGTCTGCTTGGTGGAGTTTGAGGATGAAGATGTGGTGAGCCAATTGTCCAAGTGTGGCCATGTTTTCCATATGGATTGCATCGAGAAGTGGATGGAGAGAAACAACTTCACTTGTCCACTTTGTAGGTCATTGTTCTTCAATGTGAATACTTGTCATGTAAAATGTGATGTGGATTTTCTTCCACATTCTTGGCAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031224 GO:0031225 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

158

Amino Acids

18.03

Weight (kDa)

4.81

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	85 - 133	8.5e-12	RING-H2 zinc finger domain
zf-RING_2	PF13639	89 - 133	1.6e-14	Ring finger domain
zf-ANAPC11	PF12861	89 - 136	6.2e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4	PF00097	90 - 132	2.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	90 - 130	1.9e-09	RING-type zinc-finger
zf-C3HC4_2	PF13923	90 - 132	9.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	90 - 118	2e-08	RING-like zinc finger
zf-RING_5	PF14634	90 - 133	1.7e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38140
fragaria_vesca	FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica	MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica	Prupe.8G183300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata	RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora	Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii	Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa	Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha	Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana	Rw4G024160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	2 cut(s)	68, 275
AclWI	GGATC	3 cut(s)	64, 77, 159
AcoI	YGGCCR	2 cut(s)	39, 328
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	88, 142, 412
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	95, 101, 181
AluI	AGCT	3 cut(s)	95, 101, 181
AlwI	GGATC	3 cut(s)	64, 77, 159
AoxI	GGCC	2 cut(s)	39, 328
ApeKI	GCWGC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	319
BalI	TGGCCA	2 cut(s)	41, 330
BamHI	GGATCC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	206
BfaI	CTAG	3 cut(s)	98, 173, 198
BfuAI	ACCTGC	2 cut(s)	68, 275
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	301, 369
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	4 cut(s)	35, 142, 173, 285
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	2 cut(s)	41, 330
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	2 cut(s)	41, 330
Bsp143I	GATC	2 cut(s)	69, 151
BspANI	GGCC	2 cut(s)	41, 330
BspCNI	CTCAG	4 cut(s)	34, 141, 174, 284
BspLI	GGNNCC	1 cut(s)	71
BspMI	ACCTGC	2 cut(s)	68, 275
BspPI	GGATC	3 cut(s)	64, 77, 159
BssMI	GATC	2 cut(s)	69, 151
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	4 cut(s)	21, 128, 182, 271
BstF5I	GGATG	2 cut(s)	301, 369
BstKTI	GATC	2 cut(s)	72, 154
BstMBI	GATC	2 cut(s)	69, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	41, 330
BtsCI	GGATG	2 cut(s)	301, 369
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	136, 156
BveI	ACCTGC	2 cut(s)	68, 275
Cac8I	GCNNGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	3 cut(s)	79, 332, 428
CviJI	RGCY	9 cut(s)	41, 95, 101, 145, 181, 197, 260, 312, 330
CviKI_1	RGCY	9 cut(s)	41, 95, 101, 145, 181, 197, 260, 312, 330
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	4 cut(s)	21, 128, 182, 271
DpnI	GATC	2 cut(s)	71, 153
DpnII	GATC	2 cut(s)	69, 151
EaeI	YGGCCR	2 cut(s)	39, 328
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	82, 335, 431
FaiI	YATR	8 cut(s)	7, 38, 80, 107, 333, 342, 344, 429
FatI	CATG	3 cut(s)	78, 331, 427
FauNDI	CATATG	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	308, 376
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	3 cut(s)	98, 173, 198
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	41, 330
Hin1II	CATG	3 cut(s)	82, 335, 431
HinfI	GANTC	3 cut(s)	184, 201, 248
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	242, 389
Hpy188III	TCNNGA	2 cut(s)	173, 355
Hpy8I	GTNNAC	2 cut(s)	242, 389
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	82, 168, 214, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	4 cut(s)	21, 128, 182, 271
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	82, 335, 431
Kzo9I	GATC	2 cut(s)	69, 151
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	3 cut(s)	98, 173, 198
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	71, 153
MboI	GATC	2 cut(s)	69, 151
MboII	GAAGA	4 cut(s)	179, 311, 400, 443
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	69
MlsI	TGGCCA	2 cut(s)	41, 330
MluCI	AATT	2 cut(s)	108, 314
MluNI	TGGCCA	2 cut(s)	41, 330
MlyI	GAGTC	2 cut(s)	193, 242
MnlI	CCTC	3 cut(s)	142, 250, 286
Mox20I	TGGCCA	2 cut(s)	41, 330
MscI	TGGCCA	2 cut(s)	41, 330
MseI	TTAA	1 cut(s)	472
Msp20I	TGGCCA	2 cut(s)	41, 330
MspA1I	CMGCKG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	2 cut(s)	69, 151
NlaIII	CATG	3 cut(s)	82, 335, 431
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	113
PaqCI	CACCTGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	201
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	2 cut(s)	192, 242
PpsI	GAGTC	2 cut(s)	192, 242
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	2 cut(s)	69, 151
SchI	GAGTC	2 cut(s)	193, 242
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	7 cut(s)	62, 97, 103, 120, 183, 269, 401
SfaNI	GCATC	1 cut(s)	360
Sse9I	AATT	2 cut(s)	108, 314
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	3 cut(s)	98, 173, 198
StyD4I	CCNGG	1 cut(s)	204
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	108, 314
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	2 cut(s)	136, 163
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	67, 312
TspRI	CASTG	2 cut(s)	136, 163
XbaI	TCTAGA	1 cut(s)	172
XspI	CTAG	3 cut(s)	98, 173, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.