Rmu_sc0035888.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035888.1
OG0000123
Physical Location & Seq
Forward (+)
7592 .. 8925
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035888.1_g000003.1.cds

Sequence Viewer

Length: 1152 bp
atggcggcgggggaagcggcgtcgacacttgccttggcggaggaggccgtggtgagcctgattgggggcggagaagcactccaggatccctacttttatctttgtggccggctgctagctccaaaacgtcccgtggccgtcccatcatttgcggcggtgatttcaggagtgtggcggcttaaggaaagggttttgattcgtgaagagaaggcaggggtcttcgtatttcaatttaaggcactggaggagaaggaccgcgttcttcacgatgtctcccttcaatccttggaactctggatagccgtgaaggggctccgggttgttatgcgcaatgagcgagctctaactctaatcggaaatgatctgggggcctgggtgaacttagatacagcggcgttgaagcagaaggatctcgtccaacggatccgagttgtccatgacgtgcgtcggaggatttggtcacgacttacgtactgcttctcgccggaggtttctgttatgctggaattcaggtatgagaaatgtcatggcatatgcccggattgtgggttgtttggtcatggtggtggtgtctatgacaagaggctgctaccgatgcctttgtcggtgtcgctggtgctggagacgctgcaaccgtacccgggcttgggttccctggcctcggaaaagccagcagaggaggtggtgatggctgggccggagagggcagataaaccggaggcggaactagtggctgctacaagtttggaggccccgattttttcgacgggaaaccccagcttcaaattagggaatgttggtgggccagatgcacttgggctagttgtacatgggactgatgctatctacccaaaaacttttgggatacgcaaatggtgccatggtgaatggagtatggagaagcaacaaaagccaatcttggcggagatcccttatgaatttcatcctggtgaacttgtggaggtcccaattactgctgggaagactccaaagaaaaagggtcgacctaaaagtcgtcggaataagccaaagtctcaagatggagagttggagagcaaaaagaccaacctgatgccaaggttgttggatgctgaggagcctgagacagggaccaactccgacccccaggggaaggagaagatacttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

383

Amino Acids

42.14

Weight (kDa)

8.11

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1011
Acc16I TGCGCA 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 876
AccI GTMKAC 2 cut(s) 23, 1003
AccII CGCG 1 cut(s) 258
AclWI GGATC 6 cut(s) 80, 93, 417, 418, 431, 922
AcoI YGGCCR 2 cut(s) 106, 135
AcsI RAATTY 2 cut(s) 506, 938
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 3 cut(s) 473, 638, 828
AfiI CCNNNNNNNGG 9 cut(s) 64, 309, 545, 641, 646, 647, 661, 1106, 1132
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 4 cut(s) 230, 281, 400, 784
AhlI ACTAGT 1 cut(s) 727
AjiI CACGTC 1 cut(s) 442
AjnI CCWGG 5 cut(s) 81, 371, 654, 946, 1125
AluBI AGCT 3 cut(s) 119, 341, 780
AluI AGCT 3 cut(s) 119, 341, 780
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 4 cut(s) 277, 617, 1038, 1097
AlwI GGATC 6 cut(s) 80, 93, 417, 418, 431, 922
Ama87I CYCGRG 1 cut(s) 640
AoxI GGCC 8 cut(s) 45, 106, 135, 369, 657, 695, 750, 803
ApeKI GCWGC 4 cut(s) 112, 586, 628, 734
ApoI RAATTY 2 cut(s) 506, 938
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 7 cut(s) 253, 369, 695, 751, 803, 964, 1110
AsuC2I CCSGG 4 cut(s) 317, 539, 641, 642
AsuHPI GGTGA 6 cut(s) 64, 169, 388, 697, 896, 962
AsuNHI GCTAGC 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 640
AvaII GGWCC 3 cut(s) 253, 964, 1110
BamHI GGATCC 2 cut(s) 85, 423
BanI GGYRCC 1 cut(s) 876
BanII GRGCYC 2 cut(s) 315, 343
BbsI GAAGAC 2 cut(s) 211, 989
Bbv12I GWGCWC 1 cut(s) 343
BbvCI CCTCAGC 1 cut(s) 1092
BbvI GCAGC 4 cut(s) 99, 573, 615, 721
BccI CCATC 3 cut(s) 151, 682, 1034
BceAI ACGGC 3 cut(s) 32, 122, 287
BciT130I CCWGG 5 cut(s) 83, 373, 656, 948, 1127
BciVI GTATCC 1 cut(s) 858
BcnI CCSGG 4 cut(s) 317, 539, 641, 642
BcoDI GTCTC 4 cut(s) 277, 617, 1038, 1097
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 3 cut(s) 116, 728, 821
BfrI CTTAAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 9 cut(s) 6, 18, 113, 153, 176, 393, 587, 629, 735
BlsI GCNGC 9 cut(s) 7, 19, 114, 154, 177, 394, 588, 630, 736
Bme1390I CCNGG 9 cut(s) 83, 317, 373, 539, 641, 642, 656, 948, 1127
Bme18I GGWCC 3 cut(s) 253, 964, 1110
BmeT110I CYCGRG 1 cut(s) 640
BmgBI CACGTC 1 cut(s) 442
BmgT120I GGNCC 7 cut(s) 253, 369, 695, 751, 803, 964, 1110
BmrFI CCNGG 9 cut(s) 83, 317, 373, 539, 641, 642, 656, 948, 1127
BmsI GCATC 5 cut(s) 585, 799, 829, 1062, 1078
BmtI GCTAGC 1 cut(s) 119
BoxI GACNNNNGTC 1 cut(s) 444
BpiI GAAGAC 2 cut(s) 211, 989
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpmI CTGGAG 3 cut(s) 65, 263, 641
Bpu10I CCTNAGC 1 cut(s) 1092
BpuEI CTTGAG 1 cut(s) 1020
BpuMI CCSGG 4 cut(s) 317, 539, 641, 642
BsaAI YACGTR 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 9 cut(s) 64, 309, 545, 641, 646, 647, 661, 1106, 1132
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 5 cut(s) 83, 373, 656, 948, 1127
BseGI GGATG 2 cut(s) 943, 1093
BseLI CCNNNNNNNGG 9 cut(s) 64, 309, 545, 641, 646, 647, 661, 1106, 1132
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 1083, 1092
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 4 cut(s) 56, 260, 692, 1109
BseXI GCAGC 4 cut(s) 99, 573, 615, 721
BseYI CCCAGC 3 cut(s) 692, 776, 977
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 8 cut(s) 47, 108, 137, 371, 659, 697, 752, 805
BshNI GGYRCC 1 cut(s) 876
BsiHKAI GWGCWC 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 640
BsiSI CCGG 7 cut(s) 109, 316, 485, 539, 641, 698, 716
BslFI GGGAC 5 cut(s) 114, 125, 847, 950, 1123
BslI CCNNNNNNNGG 9 cut(s) 64, 309, 545, 641, 646, 647, 661, 1106, 1132
BsmAI GTCTC 4 cut(s) 277, 617, 1038, 1097
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 5 cut(s) 114, 125, 847, 950, 1123
BsnI GGCC 8 cut(s) 47, 108, 137, 371, 659, 697, 752, 805
BsoBI CYCGRG 1 cut(s) 640
Bsp1286I GDGCHC 2 cut(s) 315, 343
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 5 cut(s) 85, 361, 409, 423, 927
Bsp19I CCATGG 1 cut(s) 880
BspANI GGCC 8 cut(s) 47, 108, 137, 371, 659, 697, 752, 805
BspCNI CTCAG 2 cut(s) 1084, 1093
BspFNI CGCG 1 cut(s) 258
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 6 cut(s) 80, 93, 417, 418, 431, 922
BspT107I GGYRCC 1 cut(s) 876
BspTI CTTAAG 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 108
BsrGI TGTACA 1 cut(s) 826
BsrI ACTGG 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 108
BssMI GATC 5 cut(s) 85, 361, 409, 423, 927
BssNI GRCGYC 1 cut(s) 20
BssT1I CCWWGG 4 cut(s) 33, 285, 880, 1076
Bst2UI CCWGG 5 cut(s) 83, 373, 656, 948, 1127
Bst4CI ACNGT 1 cut(s) 636
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 876
BstAUI TGTACA 1 cut(s) 826
BstBAI YACGTR 1 cut(s) 471
BstC8I GCNNGC 4 cut(s) 110, 117, 339, 672
BstDEI CTNAG 3 cut(s) 382, 1092, 1101
BstDSI CCRYGG 3 cut(s) 48, 132, 880
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstF5I GGATG 2 cut(s) 943, 1093
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 5 cut(s) 88, 364, 412, 426, 930
BstMAI GTCTC 4 cut(s) 277, 617, 1038, 1097
BstMBI GATC 5 cut(s) 85, 361, 409, 423, 927
BstMWI GCNNNNNNNGC 7 cut(s) 14, 44, 334, 595, 625, 876, 910
BstNI CCWGG 5 cut(s) 83, 373, 656, 948, 1127
BstPAI GACNNNNGTC 1 cut(s) 444
BstSCI CCNGG 9 cut(s) 81, 315, 371, 537, 639, 640, 654, 946, 1125
BstSNI TACGTA 1 cut(s) 471
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 99, 573, 615, 721
BstV2I GAAGAC 2 cut(s) 211, 989
BstX2I RGATCY 4 cut(s) 85, 409, 423, 927
BstYI RGATCY 4 cut(s) 85, 409, 423, 927
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 8 cut(s) 47, 108, 137, 371, 659, 697, 752, 805
BtgI CCRYGG 3 cut(s) 48, 132, 880
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 2 cut(s) 943, 1093
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 4 cut(s) 110, 117, 339, 672
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 7 cut(s) 253, 369, 695, 751, 803, 964, 1110
Cfr9I CCCGGG 1 cut(s) 640
CseI GACGC 3 cut(s) 9, 434, 634
Csp6I GTAC 3 cut(s) 472, 637, 827
CviAII CATG 5 cut(s) 437, 527, 560, 830, 881
CviQI GTAC 3 cut(s) 472, 637, 827
DdeI CTNAG 3 cut(s) 382, 1092, 1101
DpnI GATC 5 cut(s) 87, 363, 411, 425, 929
DpnII GATC 5 cut(s) 85, 361, 409, 423, 927
DrdI GACNNNNNNGTC 1 cut(s) 1011
DseDI GACNNNNNNGTC 1 cut(s) 1011
EaeI YGGCCR 2 cut(s) 106, 135
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 4 cut(s) 53, 84, 737, 938
Ecl136II GAGCTC 1 cut(s) 341
Eco105I TACGTA 1 cut(s) 471
Eco130I CCWWGG 4 cut(s) 33, 285, 880, 1076
Eco24I GRGCYC 2 cut(s) 315, 343
Eco47I GGWCC 3 cut(s) 253, 964, 1110
Eco53kI GAGCTC 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoO109I RGGNCCY 3 cut(s) 369, 751, 964
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 5 cut(s) 81, 371, 654, 946, 1125
EcoT14I CCWWGG 4 cut(s) 33, 285, 880, 1076
EcoT38I GRGCYC 2 cut(s) 315, 343
ErhI CCWWGG 4 cut(s) 33, 285, 880, 1076
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 5 cut(s) 440, 530, 563, 833, 884
FalI AAGNNNNNCTT 2 cut(s) 902, 934
FaqI GGGAC 5 cut(s) 114, 125, 847, 950, 1123
FatI CATG 5 cut(s) 436, 526, 559, 829, 880
FauNDI CATATG 1 cut(s) 533
FblI GTMKAC 2 cut(s) 23, 1003
Fnu4HI GCNGC 9 cut(s) 6, 18, 113, 153, 176, 393, 587, 629, 735
FokI GGATG 2 cut(s) 930, 1100
FriOI GRGCYC 2 cut(s) 315, 343
Fsp4HI GCNGC 9 cut(s) 6, 18, 113, 153, 176, 393, 587, 629, 735
FspBI CTAG 3 cut(s) 116, 728, 821
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 1 cut(s) 329
GluI GCNGC 9 cut(s) 6, 18, 113, 153, 176, 393, 587, 629, 735
GsaI CCCAGC 3 cut(s) 696, 780, 981
GsuI CTGGAG 3 cut(s) 65, 263, 641
HaeIII GGCC 8 cut(s) 47, 108, 137, 371, 659, 697, 752, 805
HapII CCGG 7 cut(s) 109, 316, 485, 539, 641, 698, 716
HgaI GACGC 3 cut(s) 9, 434, 634
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 5 cut(s) 440, 530, 563, 833, 884
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 2 cut(s) 24, 1004
HindII GTYRAC 2 cut(s) 24, 1004
HinfI GANTC 2 cut(s) 196, 985
HpaII CCGG 7 cut(s) 109, 316, 485, 539, 641, 698, 716
HphI GGTGA 6 cut(s) 64, 169, 388, 697, 896, 962
Hpy166II GTNNAC 4 cut(s) 24, 379, 953, 1004
Hpy188I TCNGA 6 cut(s) 356, 428, 450, 664, 1020, 1120
Hpy188III TCNNGA 6 cut(s) 165, 200, 266, 295, 462, 1037
Hpy8I GTNNAC 4 cut(s) 24, 379, 953, 1004
Hpy99I CGWCG 4 cut(s) 25, 450, 769, 1020
HpyAV CCTTC 6 cut(s) 202, 244, 287, 301, 400, 1126
HpyCH4III ACNGT 1 cut(s) 636
HpyCH4IV ACGT 3 cut(s) 127, 441, 470
HpyCH4V TGCA 2 cut(s) 631, 812
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 44, 334, 595, 625, 876, 910
HpyF3I CTNAG 3 cut(s) 382, 1092, 1101
HpySE526I ACGT 3 cut(s) 127, 441, 470
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 5 cut(s) 440, 530, 563, 833, 884
HspAI GCGC 1 cut(s) 328
KroI GCCGGC 1 cut(s) 108
KroNI GCCGGC 1 cut(s) 110
Kzo9I GATC 5 cut(s) 85, 361, 409, 423, 927
LmnI GCTCC 3 cut(s) 124, 318, 1096
Lsp1109I GCAGC 4 cut(s) 99, 573, 615, 721
LweI GCATC 5 cut(s) 585, 799, 829, 1062, 1078
MaeI CTAG 3 cut(s) 116, 728, 821
MaeII ACGT 3 cut(s) 127, 441, 470
MaeIII GTNAC 1 cut(s) 459
MalI GATC 5 cut(s) 87, 363, 411, 425, 929
MboI GATC 5 cut(s) 85, 361, 409, 423, 927
MboII GAAGA 5 cut(s) 211, 215, 254, 994, 1150
MflI RGATCY 4 cut(s) 85, 409, 423, 927
MhlI GDGCHC 2 cut(s) 315, 343
MluCI AATT 5 cut(s) 230, 506, 785, 938, 969
MlyI GAGTC 1 cut(s) 979
MmeI TCCRAC 6 cut(s) 428, 442, 998, 1029, 1065, 1143
MroNI GCCGGC 1 cut(s) 108
MseI TTAA 3 cut(s) 180, 234, 1150
MslI CAYNNNNRTG 2 cut(s) 564, 948
MspA1I CMGCKG 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 7 cut(s) 109, 316, 485, 539, 641, 698, 716
MspR9I CCNGG 9 cut(s) 83, 317, 373, 539, 641, 642, 656, 948, 1127
MvaI CCWGG 5 cut(s) 83, 373, 656, 948, 1127
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 7 cut(s) 14, 44, 334, 595, 625, 876, 910
NaeI GCCGGC 1 cut(s) 110
NciI CCSGG 4 cut(s) 317, 539, 641, 642
NcoI CCATGG 1 cut(s) 880
NdeI CATATG 1 cut(s) 533
NdeII GATC 5 cut(s) 85, 361, 409, 423, 927
NgoMIV GCCGGC 1 cut(s) 108
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 5 cut(s) 440, 530, 563, 833, 884
NmuCI GTSAC 1 cut(s) 459
NsbI TGCGCA 1 cut(s) 329
PasI CCCWGGG 1 cut(s) 1126
PcsI WCGNNNNNNNCGW 1 cut(s) 632
PdiI GCCGGC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 9 cut(s) 7, 19, 114, 154, 177, 394, 588, 630, 736
PleI GAGTC 1 cut(s) 979
PpsI GAGTC 1 cut(s) 979
Ppu21I YACGTR 1 cut(s) 471
PpuMI RGGWCCY 1 cut(s) 964
PshAI GACNNNNGTC 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 964
Psp6I CCWGG 5 cut(s) 81, 371, 654, 946, 1125
PspFI CCCAGC 3 cut(s) 692, 776, 977
PspGI CCWGG 5 cut(s) 81, 371, 654, 946, 1125
PspPI GGNCC 7 cut(s) 253, 369, 695, 751, 803, 964, 1110
PspPPI RGGWCCY 1 cut(s) 964
PsuI RGATCY 4 cut(s) 85, 409, 423, 927
RsaI GTAC 3 cut(s) 473, 638, 828
RsaNI GTAC 3 cut(s) 472, 637, 827
RseI CAYNNNNRTG 2 cut(s) 564, 948
SacI GAGCTC 1 cut(s) 343
SalI GTCGAC 2 cut(s) 22, 1002
SaqAI TTAA 3 cut(s) 180, 234, 1150
SatI GCNGC 9 cut(s) 6, 18, 113, 153, 176, 393, 587, 629, 735
Sau3AI GATC 5 cut(s) 85, 361, 409, 423, 927
Sau96I GGNCC 7 cut(s) 253, 369, 695, 751, 803, 964, 1110
SchI GAGTC 1 cut(s) 979
ScrFI CCNGG 9 cut(s) 83, 317, 373, 539, 641, 642, 656, 948, 1127
SduI GDGCHC 2 cut(s) 315, 343
SfaNI GCATC 5 cut(s) 585, 799, 829, 1062, 1078
SinI GGWCC 3 cut(s) 253, 964, 1110
SmaI CCCGGG 1 cut(s) 642
SmiMI CAYNNNNRTG 2 cut(s) 564, 948
SmlI CTYRAG 2 cut(s) 179, 1035
SmoI CTYRAG 2 cut(s) 179, 1035
SnaBI TACGTA 1 cut(s) 471
SpeI ACTAGT 1 cut(s) 727
Sse9I AATT 5 cut(s) 230, 506, 785, 938, 969
SspMI CTAG 3 cut(s) 116, 728, 821
SstI GAGCTC 1 cut(s) 343
StyD4I CCNGG 9 cut(s) 81, 315, 371, 537, 639, 640, 654, 946, 1125
StyI CCWWGG 4 cut(s) 33, 285, 880, 1076
TaaI ACNGT 1 cut(s) 636
TaiI ACGT 3 cut(s) 130, 444, 473
TaqI TCGA 3 cut(s) 23, 764, 1003
TasI AATT 5 cut(s) 230, 506, 785, 938, 969
TatI WGTACW 1 cut(s) 826
TauI GCSGC 5 cut(s) 8, 20, 155, 178, 395
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 180, 234, 1150
Tru9I TTAA 3 cut(s) 180, 234, 1150
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 4 cut(s) 112, 586, 628, 734
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 2 cut(s) 932, 951
TspGWI ACGGA 1 cut(s) 436
TspMI CCCGGG 1 cut(s) 640
TspRI CASTG 1 cut(s) 246
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 3 cut(s) 253, 964, 1110
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 2 cut(s) 506, 938
XmaI CCCGGG 1 cut(s) 640
XmiI GTMKAC 2 cut(s) 23, 1003
XspI CTAG 3 cut(s) 116, 728, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.