Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 66 - 116 | 9.4e-06 | PPR repeat family |
| PPR_2 | PF13041 | 175 - 220 | 1.1e-06 | PPR repeat family |
| PPR_2 | PF13041 | 381 - 426 | 1.1e-06 | PPR repeat family |
| PPR_2 | PF13041 | 483 - 529 | 1.6e-08 | PPR repeat family |
| PPR | PF01535 | 486 - 513 | 6.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 583 - 630 | 3.3e-13 | PPR repeat family |
| PPR | PF01535 | 586 - 616 | 3.3e-09 | PPR repeat |
| E_motif | PF20431 | 702 - 766 | 1.2e-19 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1658 |
| AatII | GACGTC | 1 cut(s) | 1109 |
| AccBSI | CCGCTC | 1 cut(s) | 587 |
| AccII | CGCG | 1 cut(s) | 519 |
| AciI | CCGC | 9 cut(s) | 111, 127, 169, 355, 587, 669, 726, 1988, 2375 |
| AclWI | GGATC | 2 cut(s) | 923, 2086 |
| AcoI | YGGCCR | 1 cut(s) | 1786 |
| AcsI | RAATTY | 6 cut(s) | 430, 1346, 1462, 1750, 2070, 2100 |
| AcuI | CTGAAG | 1 cut(s) | 276 |
| AcyI | GRCGYC | 1 cut(s) | 1106 |
| AfaI | GTAC | 7 cut(s) | 449, 495, 1082, 1481, 1691, 1851, 1949 |
| AfeI | AGCGCT | 1 cut(s) | 634 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 210, 826 |
| AflIII | ACRYGT | 4 cut(s) | 543, 1377, 1686, 1992 |
| AjnI | CCWGG | 1 cut(s) | 2278 |
| AluBI | AGCT | 7 cut(s) | 759, 784, 1004, 1508, 1543, 1811, 2402 |
| AluI | AGCT | 7 cut(s) | 759, 784, 1004, 1508, 1543, 1811, 2402 |
| Alw21I | GWGCWC | 2 cut(s) | 761, 1708 |
| Alw26I | GTCTC | 1 cut(s) | 1097 |
| Alw44I | GTGCAC | 1 cut(s) | 1704 |
| AlwI | GGATC | 2 cut(s) | 923, 2086 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 141, 1531 |
| Ama87I | CYCGRG | 1 cut(s) | 1084 |
| Aor51HI | AGCGCT | 1 cut(s) | 634 |
| AoxI | GGCC | 3 cut(s) | 151, 1786, 2411 |
| ApaLI | GTGCAC | 1 cut(s) | 1704 |
| ApeKI | GCWGC | 2 cut(s) | 1277, 2159 |
| ApoI | RAATTY | 6 cut(s) | 430, 1346, 1462, 1750, 2070, 2100 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 943, 975 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2318 |
| AspA2I | CCTAGG | 1 cut(s) | 887 |
| AspLEI | GCGC | 3 cut(s) | 347, 519, 635 |
| AspS9I | GGNCC | 2 cut(s) | 399, 2332 |
| AsuHPI | GGTGA | 3 cut(s) | 740, 1087, 2060 |
| AvaI | CYCGRG | 1 cut(s) | 1084 |
| AvaII | GGWCC | 2 cut(s) | 399, 2332 |
| AvrII | CCTAGG | 1 cut(s) | 887 |
| BaeGI | GKGCMC | 1 cut(s) | 1708 |
| BalI | TGGCCA | 1 cut(s) | 1788 |
| BanII | GRGCYC | 1 cut(s) | 761 |
| BbsI | GAAGAC | 2 cut(s) | 79, 1654 |
| Bbv12I | GWGCWC | 2 cut(s) | 761, 1708 |
| BbvCI | CCTCAGC | 1 cut(s) | 2208 |
| BbvI | GCAGC | 2 cut(s) | 1264, 2146 |
| BccI | CCATC | 3 cut(s) | 227, 1351, 2436 |
| BceAI | ACGGC | 1 cut(s) | 1541 |
| BciT130I | CCWGG | 1 cut(s) | 2280 |
| BcoDI | GTCTC | 1 cut(s) | 1097 |
| BfaI | CTAG | 5 cut(s) | 804, 888, 1001, 2328, 2432 |
| BfmI | CTRYAG | 1 cut(s) | 2284 |
| BfoI | RGCGCY | 1 cut(s) | 636 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 150 |
| BglII | AGATCT | 1 cut(s) | 1838 |
| BisI | GCNGC | 2 cut(s) | 1278, 2160 |
| BlnI | CCTAGG | 1 cut(s) | 887 |
| BlsI | GCNGC | 2 cut(s) | 1279, 2161 |
| Bme1390I | CCNGG | 1 cut(s) | 2280 |
| Bme18I | GGWCC | 2 cut(s) | 399, 2332 |
| BmeT110I | CYCGRG | 1 cut(s) | 1084 |
| BmgT120I | GGNCC | 2 cut(s) | 399, 2332 |
| BmiI | GGNNCC | 4 cut(s) | 401, 2277, 2333, 2448 |
| BmrFI | CCNGG | 1 cut(s) | 2280 |
| BmrI | ACTGGG | 2 cut(s) | 77, 1485 |
| BmuI | ACTGGG | 2 cut(s) | 77, 1485 |
| BpiI | GAAGAC | 2 cut(s) | 79, 1654 |
| BpmI | CTGGAG | 1 cut(s) | 1553 |
| Bpu10I | CCTNAGC | 3 cut(s) | 131, 1564, 2208 |
| BsaAI | YACGTR | 1 cut(s) | 2062 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1446 |
| BsaHI | GRCGYC | 1 cut(s) | 1106 |
| BsaJI | CCNNGG | 3 cut(s) | 887, 1624, 2345 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 573, 603 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 210, 826 |
| Bse1I | ACTGG | 4 cut(s) | 83, 1480, 1592, 2308 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1446 |
| BseBI | CCWGG | 1 cut(s) | 2280 |
| BseDI | CCNNGG | 3 cut(s) | 887, 1624, 2345 |
| BseGI | GGATG | 4 cut(s) | 609, 621, 1198, 1362 |
| BseJI | GATNNNNATC | 1 cut(s) | 1446 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 210, 826 |
| BseMII | CTCAG | 3 cut(s) | 561, 1193, 2199 |
| BseNI | ACTGG | 4 cut(s) | 83, 1480, 1592, 2308 |
| BseRI | GAGGAG | 3 cut(s) | 54, 280, 597 |
| BseSI | GKGCMC | 1 cut(s) | 1708 |
| BseXI | GCAGC | 2 cut(s) | 1264, 2146 |
| BseYI | CCCAGC | 3 cut(s) | 296, 629, 1188 |
| BsgI | GTGCAG | 3 cut(s) | 446, 1953, 2371 |
| Bsh1236I | CGCG | 1 cut(s) | 519 |
| BshFI | GGCC | 3 cut(s) | 153, 1788, 2413 |
| BsiHKAI | GWGCWC | 2 cut(s) | 761, 1708 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1084 |
| BsiSI | CCGG | 2 cut(s) | 932, 1133 |
| BslFI | GGGAC | 3 cut(s) | 385, 1154, 2345 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 210, 826 |
| BsmAI | GTCTC | 1 cut(s) | 1097 |
| BsmBI | CGTCTC | 1 cut(s) | 1097 |
| BsmFI | GGGAC | 3 cut(s) | 385, 1154, 2345 |
| BsmI | GAATGC | 1 cut(s) | 1558 |
| BsnI | GGCC | 3 cut(s) | 153, 1788, 2413 |
| BsoBI | CYCGRG | 1 cut(s) | 1084 |
| Bsp1286I | GDGCHC | 2 cut(s) | 761, 1708 |
| Bsp143I | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| Bsp19I | CCATGG | 1 cut(s) | 1624 |
| BspACI | CCGC | 9 cut(s) | 111, 127, 169, 355, 587, 669, 726, 1988, 2375 |
| BspANI | GGCC | 3 cut(s) | 153, 1788, 2413 |
| BspCNI | CTCAG | 3 cut(s) | 562, 1192, 2200 |
| BspFNI | CGCG | 1 cut(s) | 519 |
| BspLI | GGNNCC | 4 cut(s) | 401, 2277, 2333, 2448 |
| BspPI | GGATC | 2 cut(s) | 923, 2086 |
| BspQI | GCTCTTC | 1 cut(s) | 21 |
| BsrBI | CCGCTC | 1 cut(s) | 587 |
| BsrI | ACTGG | 4 cut(s) | 83, 1480, 1592, 2308 |
| BssECI | CCNNGG | 3 cut(s) | 887, 1624, 2345 |
| BssMI | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| BssNI | GRCGYC | 1 cut(s) | 1106 |
| BssT1I | CCWWGG | 2 cut(s) | 887, 1624 |
| Bst2UI | CCWGG | 1 cut(s) | 2280 |
| Bst4CI | ACNGT | 7 cut(s) | 177, 821, 984, 993, 1011, 1258, 2318 |
| Bst6I | CTCTTC | 6 cut(s) | 21, 82, 331, 457, 1829, 2046 |
| BstACI | GRCGYC | 1 cut(s) | 1106 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 141 |
| BstBAI | YACGTR | 1 cut(s) | 2062 |
| BstC8I | GCNNGC | 5 cut(s) | 169, 343, 1017, 1888, 2095 |
| BstDEI | CTNAG | 8 cut(s) | 131, 490, 570, 1029, 1179, 1289, 1564, 2208 |
| BstDSI | CCRYGG | 1 cut(s) | 1624 |
| BstF5I | GGATG | 4 cut(s) | 609, 621, 1198, 1362 |
| BstFNI | CGCG | 1 cut(s) | 519 |
| BstH2I | RGCGCY | 1 cut(s) | 636 |
| BstHHI | GCGC | 3 cut(s) | 347, 519, 635 |
| BstKTI | GATC | 7 cut(s) | 475, 926, 931, 1167, 1450, 1841, 2081 |
| BstMAI | GTCTC | 1 cut(s) | 1097 |
| BstMBI | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 11, 141, 150, 237, 433, 465, 668 |
| BstNI | CCWGG | 1 cut(s) | 2280 |
| BstNSI | RCATGY | 8 cut(s) | 250, 978, 1019, 1322, 1381, 1690, 1996, 2097 |
| BstSCI | CCNGG | 1 cut(s) | 2278 |
| BstSFI | CTRYAG | 1 cut(s) | 2284 |
| BstSLI | GKGCMC | 1 cut(s) | 1708 |
| BstUI | CGCG | 1 cut(s) | 519 |
| BstV1I | GCAGC | 2 cut(s) | 1264, 2146 |
| BstV2I | GAAGAC | 2 cut(s) | 79, 1654 |
| BstX2I | RGATCY | 2 cut(s) | 928, 1838 |
| BstYI | RGATCY | 2 cut(s) | 928, 1838 |
| BsuRI | GGCC | 3 cut(s) | 153, 1788, 2413 |
| BtgI | CCRYGG | 1 cut(s) | 1624 |
| BtsCI | GGATG | 4 cut(s) | 609, 621, 1198, 1362 |
| BtsI | GCAGTG | 2 cut(s) | 92, 2359 |
| BtsIMutI | CAGTG | 4 cut(s) | 92, 252, 1599, 2359 |
| Cac8I | GCNNGC | 5 cut(s) | 169, 343, 1017, 1888, 2095 |
| CaiI | CAGNNNCTG | 2 cut(s) | 141, 1531 |
| CfoI | GCGC | 3 cut(s) | 347, 519, 635 |
| Cfr13I | GGNCC | 2 cut(s) | 399, 2332 |
| CseI | GACGC | 1 cut(s) | 1151 |
| Csp6I | GTAC | 7 cut(s) | 448, 494, 1081, 1480, 1690, 1850, 1948 |
| CviQI | GTAC | 7 cut(s) | 448, 494, 1081, 1480, 1690, 1850, 1948 |
| DdeI | CTNAG | 8 cut(s) | 131, 490, 570, 1029, 1179, 1289, 1564, 2208 |
| DpnI | GATC | 7 cut(s) | 474, 925, 930, 1166, 1449, 1840, 2080 |
| DpnII | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1658 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1658 |
| EaeI | YGGCCR | 1 cut(s) | 1786 |
| Eam1104I | CTCTTC | 6 cut(s) | 21, 82, 331, 457, 1829, 2046 |
| EarI | CTCTTC | 6 cut(s) | 21, 82, 331, 457, 1829, 2046 |
| EciI | GGCGGA | 1 cut(s) | 2390 |
| Ecl136II | GAGCTC | 1 cut(s) | 759 |
| Eco130I | CCWWGG | 2 cut(s) | 887, 1624 |
| Eco147I | AGGCCT | 1 cut(s) | 2413 |
| Eco24I | GRGCYC | 1 cut(s) | 761 |
| Eco47I | GGWCC | 2 cut(s) | 399, 2332 |
| Eco47III | AGCGCT | 1 cut(s) | 634 |
| Eco53kI | GAGCTC | 1 cut(s) | 759 |
| Eco57I | CTGAAG | 1 cut(s) | 276 |
| Eco88I | CYCGRG | 1 cut(s) | 1084 |
| EcoICRI | GAGCTC | 1 cut(s) | 759 |
| EcoRI | GAATTC | 4 cut(s) | 430, 1462, 1750, 2100 |
| EcoRII | CCWGG | 1 cut(s) | 2278 |
| EcoT14I | CCWWGG | 2 cut(s) | 887, 1624 |
| EcoT38I | GRGCYC | 1 cut(s) | 761 |
| ErhI | CCWWGG | 2 cut(s) | 887, 1624 |
| Esp3I | CGTCTC | 1 cut(s) | 1097 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 473, 505 |
| FaqI | GGGAC | 3 cut(s) | 385, 1154, 2345 |
| FauI | CCCGC | 3 cut(s) | 134, 176, 362 |
| Fnu4HI | GCNGC | 2 cut(s) | 1278, 2160 |
| FokI | GGATG | 4 cut(s) | 616, 628, 1205, 1369 |
| FriOI | GRGCYC | 1 cut(s) | 761 |
| Fsp4HI | GCNGC | 2 cut(s) | 1278, 2160 |
| FspBI | CTAG | 5 cut(s) | 804, 888, 1001, 2328, 2432 |
| GlaI | GCGC | 3 cut(s) | 346, 518, 634 |
| GluI | GCNGC | 2 cut(s) | 1278, 2160 |
| GsaI | CCCAGC | 3 cut(s) | 300, 633, 1192 |
| GsuI | CTGGAG | 1 cut(s) | 1553 |
| HaeII | RGCGCY | 1 cut(s) | 636 |
| HaeIII | GGCC | 3 cut(s) | 153, 1788, 2413 |
| HapII | CCGG | 2 cut(s) | 932, 1133 |
| HgaI | GACGC | 1 cut(s) | 1151 |
| HhaI | GCGC | 3 cut(s) | 347, 519, 635 |
| Hin1I | GRCGYC | 1 cut(s) | 1106 |
| Hin6I | GCGC | 3 cut(s) | 345, 517, 633 |
| HinP1I | GCGC | 3 cut(s) | 345, 517, 633 |
| HincII | GTYRAC | 1 cut(s) | 2382 |
| HindII | GTYRAC | 1 cut(s) | 2382 |
| HindIII | AAGCTT | 1 cut(s) | 1506 |
| HinfI | GANTC | 3 cut(s) | 138, 720, 1931 |
| HpaII | CCGG | 2 cut(s) | 932, 1133 |
| HphI | GGTGA | 3 cut(s) | 740, 1087, 2060 |
| Hpy166II | GTNNAC | 4 cut(s) | 980, 1482, 1706, 2382 |
| Hpy188I | TCNGA | 7 cut(s) | 408, 876, 928, 1040, 1182, 1497, 1806 |
| Hpy188III | TCNNGA | 8 cut(s) | 104, 211, 941, 1086, 1402, 2170, 2311, 2432 |
| Hpy8I | GTNNAC | 4 cut(s) | 980, 1482, 1706, 2382 |
| Hpy99I | CGWCG | 1 cut(s) | 1111 |
| HpyAV | CCTTC | 7 cut(s) | 143, 215, 413, 1907, 2207, 2266, 2424 |
| HpyCH4III | ACNGT | 7 cut(s) | 177, 821, 984, 993, 1011, 1258, 2318 |
| HpyCH4IV | ACGT | 5 cut(s) | 545, 1106, 1296, 1659, 2061 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 11, 141, 150, 237, 433, 465, 668 |
| HpyF3I | CTNAG | 8 cut(s) | 131, 490, 570, 1029, 1179, 1289, 1564, 2208 |
| HpySE526I | ACGT | 5 cut(s) | 545, 1106, 1296, 1659, 2061 |
| Hsp92I | GRCGYC | 1 cut(s) | 1106 |
| HspAI | GCGC | 3 cut(s) | 345, 517, 633 |
| Kzo9I | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| LguI | GCTCTTC | 1 cut(s) | 21 |
| LmnI | GCTCC | 4 cut(s) | 128, 584, 1534, 2275 |
| Lsp1109I | GCAGC | 2 cut(s) | 1264, 2146 |
| MaeI | CTAG | 5 cut(s) | 804, 888, 1001, 2328, 2432 |
| MaeII | ACGT | 5 cut(s) | 545, 1106, 1296, 1659, 2061 |
| MalI | GATC | 7 cut(s) | 474, 925, 930, 1166, 1449, 1840, 2080 |
| MbiI | CCGCTC | 1 cut(s) | 587 |
| MboI | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| MflI | RGATCY | 2 cut(s) | 928, 1838 |
| MhlI | GDGCHC | 2 cut(s) | 761, 1708 |
| MlsI | TGGCCA | 1 cut(s) | 1788 |
| MluNI | TGGCCA | 1 cut(s) | 1788 |
| MlyI | GAGTC | 1 cut(s) | 132 |
| MmeI | TCCRAC | 4 cut(s) | 975, 1285, 1987, 2270 |
| Mox20I | TGGCCA | 1 cut(s) | 1788 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2318 |
| MscI | TGGCCA | 1 cut(s) | 1788 |
| MseI | TTAA | 7 cut(s) | 564, 591, 968, 1205, 1500, 1964, 2421 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1376, 1607, 1769, 2433 |
| Msp20I | TGGCCA | 1 cut(s) | 1788 |
| MspI | CCGG | 2 cut(s) | 932, 1133 |
| MspR9I | CCNGG | 1 cut(s) | 2280 |
| Mva1269I | GAATGC | 1 cut(s) | 1558 |
| MvaI | CCWGG | 1 cut(s) | 2280 |
| MvnI | CGCG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 11, 141, 150, 237, 433, 465, 668 |
| NcoI | CCATGG | 1 cut(s) | 1624 |
| NdeII | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| NlaIV | GGNNCC | 4 cut(s) | 401, 2277, 2333, 2448 |
| NmeAIII | GCCGAG | 2 cut(s) | 740, 805 |
| NmuCI | GTSAC | 6 cut(s) | 308, 386, 949, 1558, 1640, 1756 |
| NspI | RCATGY | 8 cut(s) | 250, 978, 1019, 1322, 1381, 1690, 1996, 2097 |
| PaeI | GCATGC | 2 cut(s) | 1019, 2097 |
| PaeR7I | CTCGAG | 1 cut(s) | 1084 |
| PceI | AGGCCT | 1 cut(s) | 2413 |
| PciI | ACATGT | 3 cut(s) | 1377, 1686, 1992 |
| PciSI | GCTCTTC | 1 cut(s) | 21 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 551 |
| PctI | GAATGC | 1 cut(s) | 1558 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2318 |
| PfeI | GAWTC | 2 cut(s) | 720, 1931 |
| PkrI | GCNGC | 2 cut(s) | 1279, 2161 |
| PleI | GAGTC | 1 cut(s) | 132 |
| PpsI | GAGTC | 1 cut(s) | 132 |
| Ppu21I | YACGTR | 1 cut(s) | 2062 |
| PscI | ACATGT | 3 cut(s) | 1377, 1686, 1992 |
| Psp124BI | GAGCTC | 1 cut(s) | 761 |
| Psp6I | CCWGG | 1 cut(s) | 2278 |
| PspFI | CCCAGC | 3 cut(s) | 296, 629, 1188 |
| PspGI | CCWGG | 1 cut(s) | 2278 |
| PspN4I | GGNNCC | 4 cut(s) | 401, 2277, 2333, 2448 |
| PspPI | GGNCC | 2 cut(s) | 399, 2332 |
| PstNI | CAGNNNCTG | 2 cut(s) | 141, 1531 |
| PsuI | RGATCY | 2 cut(s) | 928, 1838 |
| RsaI | GTAC | 7 cut(s) | 449, 495, 1082, 1481, 1691, 1851, 1949 |
| RsaNI | GTAC | 7 cut(s) | 448, 494, 1081, 1480, 1690, 1850, 1948 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1376, 1607, 1769, 2433 |
| SacI | GAGCTC | 1 cut(s) | 761 |
| SapI | GCTCTTC | 1 cut(s) | 21 |
| SaqAI | TTAA | 7 cut(s) | 564, 591, 968, 1205, 1500, 1964, 2421 |
| SatI | GCNGC | 2 cut(s) | 1278, 2160 |
| Sau3AI | GATC | 7 cut(s) | 472, 923, 928, 1164, 1447, 1838, 2078 |
| Sau96I | GGNCC | 2 cut(s) | 399, 2332 |
| SchI | GAGTC | 1 cut(s) | 132 |
| ScrFI | CCNGG | 1 cut(s) | 2280 |
| SduI | GDGCHC | 2 cut(s) | 761, 1708 |
| SfcI | CTRYAG | 1 cut(s) | 2284 |
| Sfr274I | CTCGAG | 1 cut(s) | 1084 |
| SinI | GGWCC | 2 cut(s) | 399, 2332 |
| SlaI | CTCGAG | 1 cut(s) | 1084 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1376, 1607, 1769, 2433 |
| SmlI | CTYRAG | 1 cut(s) | 1084 |
| SmoI | CTYRAG | 1 cut(s) | 1084 |
| SphI | GCATGC | 2 cut(s) | 1019, 2097 |
| SseBI | AGGCCT | 1 cut(s) | 2413 |
| SsiI | CCGC | 9 cut(s) | 111, 127, 169, 355, 587, 669, 726, 1988, 2375 |
| SspMI | CTAG | 5 cut(s) | 804, 888, 1001, 2328, 2432 |
| SstI | GAGCTC | 1 cut(s) | 761 |
| StuI | AGGCCT | 1 cut(s) | 2413 |
| StyD4I | CCNGG | 1 cut(s) | 2278 |
| StyI | CCWWGG | 2 cut(s) | 887, 1624 |
| TaaI | ACNGT | 7 cut(s) | 177, 821, 984, 993, 1011, 1258, 2318 |
| TaiI | ACGT | 5 cut(s) | 548, 1109, 1299, 1662, 2064 |
| TaqI | TCGA | 3 cut(s) | 105, 180, 1085 |
| TaqII | GACCGA | 2 cut(s) | 387, 952 |
| TatI | WGTACW | 4 cut(s) | 447, 1080, 1689, 1947 |
| TfiI | GAWTC | 2 cut(s) | 720, 1931 |
| Tru1I | TTAA | 7 cut(s) | 564, 591, 968, 1205, 1500, 1964, 2421 |
| Tru9I | TTAA | 7 cut(s) | 564, 591, 968, 1205, 1500, 1964, 2421 |
| TscAI | CASTG | 4 cut(s) | 99, 259, 1599, 2359 |
| TseFI | GTSAC | 6 cut(s) | 308, 386, 949, 1558, 1640, 1756 |
| TseI | GCWGC | 2 cut(s) | 1277, 2159 |
| Tsp45I | GTSAC | 6 cut(s) | 308, 386, 949, 1558, 1640, 1756 |
| TspGWI | ACGGA | 1 cut(s) | 1628 |
| TspRI | CASTG | 4 cut(s) | 99, 259, 1599, 2359 |
| VneI | GTGCAC | 1 cut(s) | 1704 |
| VpaK11BI | GGWCC | 2 cut(s) | 399, 2332 |
| XapI | RAATTY | 6 cut(s) | 430, 1346, 1462, 1750, 2070, 2100 |
| XbaI | TCTAGA | 1 cut(s) | 2431 |
| XceI | RCATGY | 8 cut(s) | 250, 978, 1019, 1322, 1381, 1690, 1996, 2097 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1774 |
| XhoI | CTCGAG | 1 cut(s) | 1084 |
| XmaJI | CCTAGG | 1 cut(s) | 887 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2318 |
| XspI | CTAG | 5 cut(s) | 804, 888, 1001, 2328, 2432 |
| ZraI | GACGTC | 1 cut(s) | 1107 |