Rmu_sc0000424.1_g000035

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000424.1
OG0000123
Physical Location & Seq
Forward (+)
149846 .. 151198
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000424.1_g000035.1.cds

Sequence Viewer

Length: 1353 bp
atggcggcggaggaggctatcatgcacctagttgggggcgaggatgcaatccaagatccttttttctatgtatgtggccggttgctctcccaaaaacgggtgttgcttccgtcgttttcggcggctatttccggtatctggggtttgaaagagcgggttttgatccgtgaggaggaaggagggatctttgtctttcaattcaaggagcaggagacgaaggatcacgtcctcaacggcggtccttggttttttaacaattccatgcttctcttggcggactatgatggtctccgggatctgacagaggttccactgaattcaatggaggtttgggtggcggtgaaaggtctgcgcgtggctatgcgcaatgcccgtgccctaaccttacttgggaactccttggggcgctttgtcaggtacgaccaaggtgcgttgcagaggaaggatccagtgcaaaggctccgggttgtgcacgacgtacgtcgccgtgtatgggctcgacgtaagtactcgttttcggcagcgatggcggtggacttagagttgaggtacgagaaatgccatggtatctgtcggggctgcggcttctttgaccacgggctgggttgctgtgacaatgccttgacggcggtcatggagtcaggagacgggtcgggctacactcctccagcgttggcaacaacgttggtggctgttgatgtggccggaattgagtcgcccggccggtctgaggggctgctggacgttgggctgggtccggagggctggacggaggaagctagggcgactgggtcggtgacgacgggacctgttgtggagccagcggctgccctgggattttcggcgggaaacctaggtttgaagttaggatttcctgttgggccgggtggcagcgggcctgaaggggaagttgggctgacttggggcctgggtggtgagtgtgatgacctgatgaaagtgagtgtgggtgggccagctgcacaggggccagcttcacagggaccagctgtacatgggctagttgcaaatgggccaggaactgatgctgtttatcccaaaattttggggactcgcaaatggtgccatggtgagtggcatatggagaagcggcacaaaccaaccttggctgagataccccatgagtttcatcttggtgaacttgtggaggtcccagtgactgttgggaagactccaaagaagaagggtcggccaaggggtagttgtaaagaaaacaaaaggatcaacctgatgccgaggttgttggatgcttttatcagatggagacgttttcttcactatgaaccactgaccagtcaaaagcaaacacttaaaagtactattgattcttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

450

Amino Acids

48.97

Weight (kDa)

8.03

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 1 cut(s) 354
AccIII TCCGGA 1 cut(s) 757
AclI AACGTT 1 cut(s) 683
AclWI GGATC 8 cut(s) 50, 157, 191, 228, 303, 440, 453, 1247
AcoI YGGCCR 4 cut(s) 76, 702, 721, 1208
AcsI RAATTY 2 cut(s) 316, 1059
AcuI CTGAAG 1 cut(s) 921
AfaI GTAC 6 cut(s) 419, 480, 509, 551, 1011, 1336
AfiI CCNNNNNNNGG 9 cut(s) 34, 96, 97, 138, 172, 390, 493, 601, 730
AgsI TTSAA 5 cut(s) 148, 197, 202, 321, 862
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 831, 927, 1033
AjuI GAANNNNNNNTTGG 2 cut(s) 894, 926
AluBI AGCT 4 cut(s) 779, 977, 992, 1007
AluI AGCT 4 cut(s) 779, 977, 992, 1007
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 4 cut(s) 206, 293, 639, 1276
Alw44I GTGCAC 1 cut(s) 470
AlwI GGATC 8 cut(s) 50, 157, 191, 228, 303, 440, 453, 1247
AlwNI CAGNNNCTG 3 cut(s) 827, 1040, 1178
Aor13HI TCCGGA 1 cut(s) 757
ApaLI GTGCAC 1 cut(s) 470
ApeKI GCWGC 6 cut(s) 521, 579, 736, 827, 891, 977
ApoI RAATTY 2 cut(s) 316, 1059
AspA2I CCTAGG 1 cut(s) 853
AspLEI GCGC 3 cut(s) 354, 366, 408
AsuC2I CCSGG 4 cut(s) 293, 464, 720, 885
AsuHPI GGTGA 5 cut(s) 352, 808, 947, 1100, 1166
AvaII GGWCC 5 cut(s) 239, 755, 806, 1001, 1168
AvrII CCTAGG 1 cut(s) 853
BaeGI GKGCMC 2 cut(s) 379, 474
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 1080
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 1193
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 6 cut(s) 533, 566, 723, 814, 903, 964
BccI CCATC 3 cut(s) 278, 520, 1272
BceAI ACGGC 3 cut(s) 250, 471, 642
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 833, 929, 1035
BcnI CCSGG 4 cut(s) 293, 464, 720, 885
BcoDI GTCTC 4 cut(s) 206, 293, 639, 1276
BfaI CTAG 4 cut(s) 29, 780, 854, 1019
BfoI RGCGCY 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 626
BlnI CCTAGG 1 cut(s) 853
BmcAI AGTACT 2 cut(s) 509, 1336
Bme1390I CCNGG 7 cut(s) 293, 464, 720, 833, 885, 929, 1035
Bme18I GGWCC 5 cut(s) 239, 755, 806, 1001, 1168
BmgBI CACGTC 1 cut(s) 226
BmrFI CCNGG 7 cut(s) 293, 464, 720, 833, 885, 929, 1035
BmrI ACTGGG 2 cut(s) 798, 1166
BmsI GCATC 4 cut(s) 34, 1033, 1239, 1255
BmuI ACTGGG 2 cut(s) 798, 1166
BoxI GACNNNNGTC 2 cut(s) 480, 629
BpiI GAAGAC 1 cut(s) 1193
BpmI CTGGAG 1 cut(s) 651
BpuMI CCSGG 4 cut(s) 293, 464, 720, 885
BsaI GGTCTC 1 cut(s) 293
BsaWI WCCGGW 2 cut(s) 131, 757
Bsc4I CCNNNNNNNGG 9 cut(s) 34, 96, 97, 138, 172, 390, 493, 601, 730
Bse118I RCCGGY 2 cut(s) 78, 723
Bse1I ACTGG 4 cut(s) 449, 793, 1172, 1311
Bse3DI GCAATG 1 cut(s) 373
BseAI TCCGGA 1 cut(s) 757
BseBI CCWGG 3 cut(s) 833, 929, 1035
BseGI GGATG 2 cut(s) 49, 1270
BseLI CCNNNNNNNGG 9 cut(s) 34, 96, 97, 138, 172, 390, 493, 601, 730
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 720, 1119
BseNI ACTGG 4 cut(s) 449, 793, 1172, 1311
BseRI GAGGAG 3 cut(s) 26, 185, 654
BseSI GKGCMC 2 cut(s) 379, 474
BseX3I CGGCCG 1 cut(s) 721
BseXI GCAGC 6 cut(s) 533, 566, 723, 814, 903, 964
BseYI CCCAGC 2 cut(s) 601, 751
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 724
BshNI GGYRCC 1 cut(s) 1080
BsiEI CGRYCG 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 758, 884
BsiWI CGTACG 1 cut(s) 478
BslFI GGGAC 4 cut(s) 819, 1014, 1081, 1154
BslI CCNNNNNNNGG 9 cut(s) 34, 96, 97, 138, 172, 390, 493, 601, 730
BsmAI GTCTC 4 cut(s) 206, 293, 639, 1276
BsmBI CGTCTC 3 cut(s) 206, 639, 1276
BsmFI GGGAC 4 cut(s) 819, 1014, 1081, 1154
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 3 cut(s) 379, 474, 499
Bsp13I TCCGGA 1 cut(s) 757
Bsp1407I TGTACA 1 cut(s) 1009
Bsp143I GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
Bsp19I CCATGG 2 cut(s) 562, 1084
BspCNI CTCAG 2 cut(s) 721, 1120
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 1 cut(s) 354
BspPI GGATC 8 cut(s) 50, 157, 191, 228, 303, 440, 453, 1247
BspT107I GGYRCC 1 cut(s) 1080
BspTNI GGTCTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 2 cut(s) 78, 723
BsrGI TGTACA 1 cut(s) 1009
BsrI ACTGG 4 cut(s) 449, 793, 1172, 1311
BssAI RCCGGY 2 cut(s) 78, 723
BssMI GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
BssT1I CCWWGG 8 cut(s) 242, 399, 424, 562, 853, 1084, 1122, 1211
Bst2UI CCWGG 3 cut(s) 833, 929, 1035
Bst4CI ACNGT 1 cut(s) 1180
BstAPI GCANNNNNTGC 1 cut(s) 1080
BstAUI TGTACA 1 cut(s) 1009
BstC8I GCNNGC 4 cut(s) 822, 896, 975, 990
BstDEI CTNAG 3 cut(s) 538, 729, 1128
BstDSI CCRYGG 3 cut(s) 562, 595, 1084
BstF5I GGATG 2 cut(s) 49, 1270
BstFNI CGCG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 3 cut(s) 354, 366, 408
BstKTI GATC 7 cut(s) 58, 165, 186, 223, 298, 448, 1242
BstMAI GTCTC 4 cut(s) 206, 293, 639, 1276
BstMBI GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
BstMCI CGRYCG 1 cut(s) 724
BstMWI GCNNNNNNNGC 4 cut(s) 14, 527, 626, 1080
BstNI CCWGG 3 cut(s) 833, 929, 1035
BstPAI GACNNNNGTC 2 cut(s) 480, 629
BstSCI CCNGG 7 cut(s) 291, 462, 718, 831, 883, 927, 1033
BstSLI GKGCMC 2 cut(s) 379, 474
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 6 cut(s) 533, 566, 723, 814, 903, 964
BstV2I GAAGAC 1 cut(s) 1193
BstX2I RGATCY 4 cut(s) 55, 183, 295, 445
BstXI CCANNNNNNTGG 1 cut(s) 1063
BstYI RGATCY 4 cut(s) 55, 183, 295, 445
BstZI CGGCCG 1 cut(s) 721
BtgI CCRYGG 3 cut(s) 562, 595, 1084
BtgZI GCGATG 1 cut(s) 539
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 49, 1270
BtsIMutI CAGTG 4 cut(s) 311, 456, 1179, 1304
Cac8I GCNNGC 4 cut(s) 822, 896, 975, 990
CaiI CAGNNNCTG 3 cut(s) 827, 1040, 1178
CfoI GCGC 3 cut(s) 354, 366, 408
Cfr10I RCCGGY 2 cut(s) 78, 723
Csp6I GTAC 6 cut(s) 418, 479, 508, 550, 1010, 1335
CspCI CAANNNNNGTGG 2 cut(s) 669, 704
CviAII CATG 7 cut(s) 22, 262, 563, 634, 1013, 1085, 1139
CviQI GTAC 6 cut(s) 418, 479, 508, 550, 1010, 1335
DdeI CTNAG 3 cut(s) 538, 729, 1128
DpnI GATC 7 cut(s) 57, 164, 185, 222, 297, 447, 1241
DpnII GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
EaeI YGGCCR 4 cut(s) 76, 702, 721, 1208
EagI CGGCCG 1 cut(s) 721
EciI GGCGGA 2 cut(s) 23, 290
EclXI CGGCCG 1 cut(s) 721
Eco130I CCWWGG 8 cut(s) 242, 399, 424, 562, 853, 1084, 1122, 1211
Eco24I GRGCYC 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 5 cut(s) 239, 755, 806, 1001, 1168
Eco52I CGGCCG 1 cut(s) 721
Eco57I CTGAAG 1 cut(s) 921
EcoO109I RGGNCCY 3 cut(s) 806, 925, 1168
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 831, 927, 1033
EcoT14I CCWWGG 8 cut(s) 242, 399, 424, 562, 853, 1084, 1122, 1211
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 8 cut(s) 242, 399, 424, 562, 853, 1084, 1122, 1211
Esp3I CGTCTC 3 cut(s) 206, 639, 1276
FaeI CATG 7 cut(s) 25, 265, 566, 637, 1016, 1088, 1142
FaqI GGGAC 4 cut(s) 819, 1014, 1081, 1154
FatI CATG 7 cut(s) 21, 261, 562, 633, 1012, 1084, 1138
FauI CCCGC 3 cut(s) 147, 838, 887
FauNDI CATATG 1 cut(s) 1098
FokI GGATG 2 cut(s) 56, 1277
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 4 cut(s) 29, 780, 854, 1019
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 3 cut(s) 353, 365, 407
GsaI CCCAGC 2 cut(s) 605, 755
GsuI CTGGAG 1 cut(s) 651
HaeII RGCGCY 1 cut(s) 409
HapII CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 758, 884
HhaI GCGC 3 cut(s) 354, 366, 408
Hin1II CATG 7 cut(s) 25, 265, 566, 637, 1016, 1088, 1142
Hin6I GCGC 3 cut(s) 352, 364, 406
HinP1I GCGC 3 cut(s) 352, 364, 406
HinfI GANTC 5 cut(s) 638, 713, 1069, 1189, 1343
HpaII CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 758, 884
HphI GGTGA 5 cut(s) 352, 808, 947, 1100, 1166
Hpy166II GTNNAC 3 cut(s) 472, 535, 1157
Hpy188I TCNGA 3 cut(s) 300, 730, 1277
Hpy188III TCNNGA 2 cut(s) 642, 758
Hpy8I GTNNAC 3 cut(s) 472, 535, 1157
Hpy99I CGWCG 5 cut(s) 115, 479, 486, 504, 805
HpyAV CCTTC 5 cut(s) 170, 211, 436, 896, 1195
HpyCH4III ACNGT 1 cut(s) 1180
HpyCH4IV ACGT 7 cut(s) 225, 477, 481, 502, 683, 744, 1285
HpyCH4V TGCA 7 cut(s) 25, 47, 436, 454, 472, 980, 1025
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 527, 626, 1080
HpyF3I CTNAG 3 cut(s) 538, 729, 1128
HpySE526I ACGT 7 cut(s) 225, 477, 481, 502, 683, 744, 1285
Hsp92II CATG 7 cut(s) 25, 265, 566, 637, 1016, 1088, 1142
HspAI GCGC 3 cut(s) 352, 364, 406
Kpn2I TCCGGA 1 cut(s) 757
Kzo9I GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
LmnI GCTCC 3 cut(s) 205, 465, 817
Lsp1109I GCAGC 6 cut(s) 533, 566, 723, 814, 903, 964
LweI GCATC 4 cut(s) 34, 1033, 1239, 1255
MaeI CTAG 4 cut(s) 29, 780, 854, 1019
MaeII ACGT 7 cut(s) 225, 477, 481, 502, 683, 744, 1285
MaeIII GTNAC 3 cut(s) 611, 796, 1174
MalI GATC 7 cut(s) 57, 164, 185, 222, 297, 447, 1241
MbiI CCGCTC 1 cut(s) 154
MboI GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
MboII GAAGA 3 cut(s) 1198, 1210, 1283
MflI RGATCY 4 cut(s) 55, 183, 295, 445
MhlI GDGCHC 3 cut(s) 379, 474, 499
MluCI AATT 5 cut(s) 197, 256, 316, 708, 1059
MlyI GAGTC 4 cut(s) 647, 722, 1063, 1183
MmeI TCCRAC 1 cut(s) 1242
MroI TCCGGA 1 cut(s) 757
MseI TTAA 3 cut(s) 252, 1329, 1351
MslI CAYNNNNRTG 1 cut(s) 1152
MspA1I CMGCKG 4 cut(s) 824, 894, 977, 1007
MspI CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 758, 884
MspR9I CCNGG 7 cut(s) 293, 464, 720, 833, 885, 929, 1035
MvaI CCWGG 3 cut(s) 833, 929, 1035
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 14, 527, 626, 1080
NciI CCSGG 4 cut(s) 293, 464, 720, 885
NcoI CCATGG 2 cut(s) 562, 1084
NdeI CATATG 1 cut(s) 1098
NdeII GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
NlaIII CATG 7 cut(s) 25, 265, 566, 637, 1016, 1088, 1142
NmeAIII GCCGAG 1 cut(s) 1278
NmuCI GTSAC 3 cut(s) 611, 796, 1174
NsbI TGCGCA 1 cut(s) 365
PasI CCCWGGG 1 cut(s) 832
PfeI GAWTC 1 cut(s) 1343
Pfl23II CGTACG 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 790
PflMI CCANNNNNTGG 1 cut(s) 601
PfoI TCCNGGA 1 cut(s) 291
PleI GAGTC 4 cut(s) 646, 721, 1063, 1183
PpsI GAGTC 4 cut(s) 646, 721, 1063, 1183
PpuMI RGGWCCY 2 cut(s) 806, 1168
PshAI GACNNNNGTC 2 cut(s) 480, 629
Psp1406I AACGTT 1 cut(s) 683
Psp5II RGGWCCY 2 cut(s) 806, 1168
Psp6I CCWGG 3 cut(s) 831, 927, 1033
PspFI CCCAGC 2 cut(s) 601, 751
PspGI CCWGG 3 cut(s) 831, 927, 1033
PspLI CGTACG 1 cut(s) 478
PspPPI RGGWCCY 2 cut(s) 806, 1168
PstNI CAGNNNCTG 3 cut(s) 827, 1040, 1178
PsuI RGATCY 4 cut(s) 55, 183, 295, 445
PsyI GACNNNGTC 1 cut(s) 790
PvuII CAGCTG 2 cut(s) 977, 1007
RsaI GTAC 6 cut(s) 419, 480, 509, 551, 1011, 1336
RsaNI GTAC 6 cut(s) 418, 479, 508, 550, 1010, 1335
RseI CAYNNNNRTG 1 cut(s) 1152
SaqAI TTAA 3 cut(s) 252, 1329, 1351
Sau3AI GATC 7 cut(s) 55, 162, 183, 220, 295, 445, 1239
ScaI AGTACT 2 cut(s) 509, 1336
SchI GAGTC 4 cut(s) 647, 722, 1063, 1183
ScrFI CCNGG 7 cut(s) 293, 464, 720, 833, 885, 929, 1035
SduI GDGCHC 3 cut(s) 379, 474, 499
SfaNI GCATC 4 cut(s) 34, 1033, 1239, 1255
SinI GGWCC 5 cut(s) 239, 755, 806, 1001, 1168
SmiMI CAYNNNNRTG 1 cut(s) 1152
Sse9I AATT 5 cut(s) 197, 256, 316, 708, 1059
SspMI CTAG 4 cut(s) 29, 780, 854, 1019
StyD4I CCNGG 7 cut(s) 291, 462, 718, 831, 883, 927, 1033
StyI CCWWGG 8 cut(s) 242, 399, 424, 562, 853, 1084, 1122, 1211
TaaI ACNGT 1 cut(s) 1180
TaiI ACGT 7 cut(s) 228, 480, 484, 505, 686, 747, 1288
TaqI TCGA 1 cut(s) 499
TasI AATT 5 cut(s) 197, 256, 316, 708, 1059
TatI WGTACW 3 cut(s) 507, 1009, 1334
TauI GCSGC 5 cut(s) 8, 125, 585, 827, 1111
TfiI GAWTC 1 cut(s) 1343
Tru1I TTAA 3 cut(s) 252, 1329, 1351
Tru9I TTAA 3 cut(s) 252, 1329, 1351
TscAI CASTG 4 cut(s) 318, 456, 1179, 1311
TseFI GTSAC 3 cut(s) 611, 796, 1174
TseI GCWGC 6 cut(s) 521, 579, 736, 827, 891, 977
Tsp45I GTSAC 3 cut(s) 611, 796, 1174
TspDTI ATGAA 3 cut(s) 968, 1136, 1314
TspGWI ACGGA 3 cut(s) 99, 155, 785
TspRI CASTG 4 cut(s) 318, 456, 1179, 1311
Tth111I GACNNNGTC 1 cut(s) 790
Van91I CCANNNNNTGG 1 cut(s) 601
VneI GTGCAC 1 cut(s) 470
VpaK11BI GGWCC 5 cut(s) 239, 755, 806, 1001, 1168
XapI RAATTY 2 cut(s) 316, 1059
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 853
XspI CTAG 4 cut(s) 29, 780, 854, 1019
ZrmI AGTACT 2 cut(s) 509, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.