Rmu_sc0008861.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008861.1
OG0000123
Physical Location & Seq
Reverse (-)
30411 .. 32893
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008861.1_g000009.1.cds

Sequence Viewer

Length: 1425 bp
atggcggcggaggaggctaccgtgcatttggttgggggcgaggaagcaatccaagattcttttttctatgtttgtggccgattgctttcccagaaacaagtctttctaccgtcgttttcggcaacgatttctggcatctgggggttgaaagaacgcatgttgatccgtgaggagggagaagggatctatatgcttcacttggcggattatgatggtatctgggatctggcagaggttccgttgaattctatggcgacggtgagagggttgcgcatggctatgtgcaatgatcgtgccctaaccctgcttgggaacgaattgggggtatttgtgctttatgatcaaggggcgttgcagagaaaagatcctgtacaacgagtccggattatgcacgacgttcaccggcgcatatgggctcgacgtatgtactccttctcggcagcggtggaggtcgaactcgaactaaggtatgagaaatgccacggtatatgcaggggctgtggttttttcgaccatggcatgggtggctgcgatggtatgctgacaacgataatggcttcggggaacattgctccaccagtggaggtaccgatggtggcggtcgaagggctcggagatggggtgtccagtcgatctgaggaggtgccggcgctcagaatggctcaagtctggacggaaggtggggaggctgagggctcagcggaaaaactcgggttggggtctgctgctgctccaggtttctcggcgggaaaccctagtttgaaattggggctctctgcagggccagtttgcagcgggcctgggtctgggagggaattggctatgggcccggagcttgggctttttggatatggggttgtaggaggactgttgggattggtggggcgtgatgctgggcctgcatttgctattgggcctgcatttgctattgggcctgctacagcagaaagcacagttttgggggtacgaaaatggtgccaaggtgagtggagctcagagaagaggttcaagctgagcttggcggtgatacctcgtgaatttcattttggtgaccttgtggatgtcctggttactattgagaagatccggaagaagaagggtcgccctaagggcagcaagaacaagcccaaggttcgtgatggagaattgtgtagcaggaagaccaacctgaggctgaggttgttagatgctaaggactctgatgcaggacacattcagtatgctagtcgacttgcccatggcaacatgcataacaccatacatgatctctggatattgaaccggtttggtgtccaatgcaagcctcgcggtgctcctaggataattgaagtcaattggcatccaccaccttatgggtggattaaaattaactttgatggtggaagcatggttctaatgtgtggatccgatggatttgaagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

474

Amino Acids

51.4

Weight (kDa)

7.17

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 272
Acc65I GGTACC 1 cut(s) 586
AccB1I GGYRCC 3 cut(s) 586, 643, 975
AccB7I CCANNNNNTGG 2 cut(s) 520, 1352
AccI GTMKAC 1 cut(s) 1228
AccII CGCG 1 cut(s) 1308
AccIII TCCGGA 2 cut(s) 381, 1086
AclWI GGATC 7 cut(s) 157, 191, 231, 359, 1078, 1398, 1411
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 2 cut(s) 244, 1037
AfaI GTAC 4 cut(s) 372, 428, 588, 966
AfiI CCNNNNNNNGG 7 cut(s) 172, 309, 520, 806, 836, 1170, 1352
AgeI ACCGGT 1 cut(s) 1281
AgsI TTSAA 7 cut(s) 148, 244, 763, 1009, 1279, 1328, 1418
AjnI CCWGG 3 cut(s) 733, 799, 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
AloI GAACNNNNNNTCC 2 cut(s) 1374, 1406
AluBI AGCT 4 cut(s) 835, 993, 1012, 1017
AluI AGCT 4 cut(s) 835, 993, 1012, 1017
Alw21I GWGCWC 2 cut(s) 995, 1315
AlwI GGATC 7 cut(s) 157, 191, 231, 359, 1078, 1398, 1411
AlwNI CAGNNNCTG 1 cut(s) 498
Ama87I CYCGRG 1 cut(s) 710
Aor13HI TCCGGA 2 cut(s) 381, 1086
AoxI GGCC 7 cut(s) 76, 782, 797, 826, 896, 914, 932
ApaI GGGCCC 1 cut(s) 830
ApeKI GCWGC 6 cut(s) 440, 528, 725, 728, 792, 1113
ApoI RAATTY 2 cut(s) 244, 1037
AsiGI ACCGGT 1 cut(s) 1281
Asp700I GAANNNNTTC 1 cut(s) 1004
Asp718I GGTACC 1 cut(s) 586
AspA2I CCTAGG 1 cut(s) 1316
AspLEI GCGC 3 cut(s) 273, 408, 652
AspS9I GGNCC 7 cut(s) 782, 797, 826, 827, 896, 914, 932
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 5 cut(s) 271, 392, 995, 1036, 1061
AvaI CYCGRG 1 cut(s) 710
AvrII CCTAGG 1 cut(s) 1316
AxyI CCTNAGG 2 cut(s) 1107, 1169
BaeGI GKGCMC 2 cut(s) 298, 830
BamHI GGATCC 1 cut(s) 1403
BanI GGYRCC 3 cut(s) 586, 643, 975
BanII GRGCYC 6 cut(s) 418, 612, 698, 774, 830, 995
BauI CACGAG 1 cut(s) 1032
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 2 cut(s) 995, 1315
BbvCI CCTCAGC 2 cut(s) 690, 1175
BbvI GCAGC 6 cut(s) 452, 515, 712, 715, 804, 1125
BccI CCATC 7 cut(s) 206, 527, 586, 611, 1133, 1370, 1403
BcgI CGANNNNNNTGC 2 cut(s) 957, 991
BciT130I CCWGG 3 cut(s) 735, 801, 1067
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 830
BfaI CTAG 3 cut(s) 756, 1224, 1317
BfmI CTRYAG 2 cut(s) 777, 939
BfoI RGCGCY 1 cut(s) 653
BglI GCCNNNNNGGC 1 cut(s) 1110
BisI GCNGC 7 cut(s) 6, 441, 529, 726, 729, 793, 1114
BlnI CCTAGG 1 cut(s) 1316
BlpI GCTNAGC 2 cut(s) 697, 1013
BlsI GCNGC 7 cut(s) 7, 442, 530, 727, 730, 794, 1115
Bme1390I CCNGG 4 cut(s) 735, 801, 830, 1067
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 7 cut(s) 782, 797, 826, 827, 896, 914, 932
BmiI GGNNCC 6 cut(s) 237, 588, 645, 828, 977, 1405
BmrFI CCNGG 4 cut(s) 735, 801, 830, 1067
BmsI GCATC 5 cut(s) 144, 880, 1177, 1192, 1348
BpiI GAAGAC 1 cut(s) 1166
BplI GAGNNNNNCTC 2 cut(s) 977, 1009
BpmI CTGGAG 1 cut(s) 717
Bpu10I CCTNAGC 3 cut(s) 690, 1175, 1191
Bpu1102I GCTNAGC 2 cut(s) 697, 1013
BpuEI CTTGAG 1 cut(s) 648
BpuMI CCSGG 1 cut(s) 830
BsaJI CCNNGG 7 cut(s) 481, 514, 800, 979, 1128, 1237, 1316
BsaWI WCCGGW 3 cut(s) 381, 1086, 1281
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 309, 520, 806, 836, 1170, 1352
Bse118I RCCGGY 3 cut(s) 402, 646, 1281
Bse1I ACTGG 3 cut(s) 578, 627, 785
Bse21I CCTNAGG 2 cut(s) 1107, 1169
Bse3DI GCAATG 2 cut(s) 292, 567
BseAI TCCGGA 2 cut(s) 381, 1086
BseBI CCWGG 3 cut(s) 735, 801, 1067
BseDI CCNNGG 7 cut(s) 481, 514, 800, 979, 1128, 1237, 1316
BseGI GGATG 2 cut(s) 1066, 1339
BseLI CCNNNNNNNGG 7 cut(s) 172, 309, 520, 806, 836, 1170, 1352
BseMI GCAATG 2 cut(s) 292, 567
BseMII CTCAG 8 cut(s) 627, 667, 681, 711, 1004, 1008, 1160, 1166
BseNI ACTGG 3 cut(s) 578, 627, 785
BseRI GAGGAG 3 cut(s) 26, 185, 653
BseSI GKGCMC 2 cut(s) 298, 830
BseXI GCAGC 6 cut(s) 452, 515, 712, 715, 804, 1125
BseYI CCCAGC 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 1308
Bsh1285I CGRYCG 1 cut(s) 603
BshFI GGCC 7 cut(s) 78, 784, 799, 828, 898, 916, 934
BshNI GGYRCC 3 cut(s) 586, 643, 975
BshTI ACCGGT 1 cut(s) 1281
BsiEI CGRYCG 1 cut(s) 603
BsiHKAI GWGCWC 2 cut(s) 995, 1315
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 6 cut(s) 382, 403, 647, 830, 1087, 1282
BslI CCNNNNNNNGG 7 cut(s) 172, 309, 520, 806, 836, 1170, 1352
BsnI GGCC 7 cut(s) 78, 784, 799, 828, 898, 916, 934
BsoBI CYCGRG 1 cut(s) 710
Bsp120I GGGCCC 1 cut(s) 826
Bsp1286I GDGCHC 8 cut(s) 298, 418, 612, 698, 774, 830, 995, 1315
Bsp13I TCCGGA 2 cut(s) 381, 1086
Bsp1407I TGTACA 1 cut(s) 370
Bsp1720I GCTNAGC 2 cut(s) 697, 1013
Bsp19I CCATGG 2 cut(s) 514, 1237
BspANI GGCC 7 cut(s) 78, 784, 799, 828, 898, 916, 934
BspCNI CTCAG 8 cut(s) 628, 666, 682, 710, 1005, 1007, 1161, 1167
BspEI TCCGGA 2 cut(s) 381, 1086
BspFNI CGCG 1 cut(s) 1308
BspLI GGNNCC 6 cut(s) 237, 588, 645, 828, 977, 1405
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 7 cut(s) 157, 191, 231, 359, 1078, 1398, 1411
BspT107I GGYRCC 3 cut(s) 586, 643, 975
BsrDI GCAATG 2 cut(s) 292, 567
BsrFI RCCGGY 3 cut(s) 402, 646, 1281
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 3 cut(s) 578, 627, 785
BssAI RCCGGY 3 cut(s) 402, 646, 1281
BssECI CCNNGG 7 cut(s) 481, 514, 800, 979, 1128, 1237, 1316
BssSI CACGAG 1 cut(s) 1032
BssT1I CCWWGG 5 cut(s) 514, 979, 1128, 1237, 1316
Bst2BI CACGAG 1 cut(s) 1032
Bst2UI CCWGG 3 cut(s) 735, 801, 1067
Bst4CI ACNGT 6 cut(s) 22, 111, 259, 485, 870, 955
Bst6I CTCTTC 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 6 cut(s) 648, 797, 900, 918, 936, 1301
BstDSI CCRYGG 3 cut(s) 481, 514, 1237
BstEII GGTNACC 1 cut(s) 1049
BstF5I GGATG 2 cut(s) 1066, 1339
BstFNI CGCG 1 cut(s) 1308
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 3 cut(s) 273, 408, 652
BstMCI CGRYCG 1 cut(s) 603
BstMWI GCNNNNNNNGC 5 cut(s) 14, 525, 899, 1110, 1305
BstNI CCWGG 3 cut(s) 735, 801, 1067
BstNSI RCATGY 2 cut(s) 160, 1249
BstPI GGTNACC 1 cut(s) 1049
BstSCI CCNGG 4 cut(s) 733, 799, 828, 1065
BstSFI CTRYAG 2 cut(s) 777, 939
BstSLI GKGCMC 2 cut(s) 298, 830
BstUI CGCG 1 cut(s) 1308
BstV1I GCAGC 6 cut(s) 452, 515, 712, 715, 804, 1125
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 5 cut(s) 183, 223, 364, 1083, 1403
BstYI RGATCY 5 cut(s) 183, 223, 364, 1083, 1403
Bsu36I CCTNAGG 2 cut(s) 1107, 1169
BsuRI GGCC 7 cut(s) 78, 784, 799, 828, 898, 916, 934
BtgI CCRYGG 3 cut(s) 481, 514, 1237
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 1066, 1339
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 6 cut(s) 648, 797, 900, 918, 936, 1301
CaiI CAGNNNCTG 1 cut(s) 498
CfoI GCGC 3 cut(s) 273, 408, 652
Cfr10I RCCGGY 3 cut(s) 402, 646, 1281
Cfr13I GGNCC 7 cut(s) 782, 797, 826, 827, 896, 914, 932
Csp6I GTAC 4 cut(s) 371, 427, 587, 965
CspAI ACCGGT 1 cut(s) 1281
CspCI CAANNNNNGTGG 2 cut(s) 968, 1003
CviAII CATG 8 cut(s) 157, 274, 515, 520, 1238, 1246, 1262, 1387
CviQI GTAC 4 cut(s) 371, 427, 587, 965
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 995
EarI CTCTTC 1 cut(s) 995
EciI GGCGGA 2 cut(s) 23, 218
Ecl136II GAGCTC 1 cut(s) 993
Eco130I CCWWGG 5 cut(s) 514, 979, 1128, 1237, 1316
Eco24I GRGCYC 6 cut(s) 418, 612, 698, 774, 830, 995
Eco53kI GAGCTC 1 cut(s) 993
Eco81I CCTNAGG 2 cut(s) 1107, 1169
Eco88I CYCGRG 1 cut(s) 710
Eco91I GGTNACC 1 cut(s) 1049
EcoICRI GAGCTC 1 cut(s) 993
EcoO65I GGTNACC 1 cut(s) 1049
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 733, 799, 1065
EcoT14I CCWWGG 5 cut(s) 514, 979, 1128, 1237, 1316
EcoT22I ATGCAT 1 cut(s) 1251
EcoT38I GRGCYC 6 cut(s) 418, 612, 698, 774, 830, 995
ErhI CCWWGG 5 cut(s) 514, 979, 1128, 1237, 1316
FaeI CATG 8 cut(s) 160, 277, 518, 523, 1241, 1249, 1265, 1390
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FatI CATG 8 cut(s) 156, 273, 514, 519, 1237, 1245, 1261, 1386
FauI CCCGC 2 cut(s) 739, 788
FauNDI CATATG 1 cut(s) 410
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 1228
Fnu4HI GCNGC 7 cut(s) 6, 441, 529, 726, 729, 793, 1114
FokI GGATG 2 cut(s) 1073, 1326
FriOI GRGCYC 6 cut(s) 418, 612, 698, 774, 830, 995
Fsp4HI GCNGC 7 cut(s) 6, 441, 529, 726, 729, 793, 1114
FspBI CTAG 3 cut(s) 756, 1224, 1317
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 3 cut(s) 272, 407, 651
GluI GCNGC 7 cut(s) 6, 441, 529, 726, 729, 793, 1114
GsaI CCCAGC 1 cut(s) 897
GsuI CTGGAG 1 cut(s) 717
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 7 cut(s) 78, 784, 799, 828, 898, 916, 934
HapII CCGG 6 cut(s) 382, 403, 647, 830, 1087, 1282
HhaI GCGC 3 cut(s) 273, 408, 652
Hin1II CATG 8 cut(s) 160, 277, 518, 523, 1241, 1249, 1265, 1390
Hin6I GCGC 3 cut(s) 271, 406, 650
HinP1I GCGC 3 cut(s) 271, 406, 650
HincII GTYRAC 1 cut(s) 1229
HindII GTYRAC 1 cut(s) 1229
HinfI GANTC 3 cut(s) 56, 378, 1196
HpaII CCGG 6 cut(s) 382, 403, 647, 830, 1087, 1282
HphI GGTGA 5 cut(s) 271, 392, 995, 1036, 1061
Hpy166II GTNNAC 2 cut(s) 400, 1229
Hpy188I TCNGA 6 cut(s) 614, 637, 656, 997, 1201, 1408
Hpy188III TCNNGA 6 cut(s) 382, 670, 1034, 1087, 1136, 1270
Hpy8I GTNNAC 2 cut(s) 400, 1229
Hpy99I CGWCG 4 cut(s) 115, 259, 398, 423
HpyAV CCTTC 5 cut(s) 173, 442, 599, 671, 1090
HpyCH4III ACNGT 6 cut(s) 22, 111, 259, 485, 870, 955
HpyCH4IV ACGT 2 cut(s) 396, 421
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 525, 899, 1110, 1305
HpySE526I ACGT 2 cut(s) 396, 421
Hsp92II CATG 8 cut(s) 160, 277, 518, 523, 1241, 1249, 1265, 1390
HspAI GCGC 3 cut(s) 271, 406, 650
Kpn2I TCCGGA 2 cut(s) 381, 1086
KpnI GGTACC 1 cut(s) 590
KroI GCCGGC 1 cut(s) 646
KroNI GCCGGC 1 cut(s) 648
Ksp22I TGATCA 1 cut(s) 340
LmnI GCTCC 5 cut(s) 577, 736, 832, 990, 1318
Lsp1109I GCAGC 6 cut(s) 452, 515, 712, 715, 804, 1125
LweI GCATC 5 cut(s) 144, 880, 1177, 1192, 1348
MaeI CTAG 3 cut(s) 756, 1224, 1317
MaeII ACGT 2 cut(s) 396, 421
MaeIII GTNAC 2 cut(s) 1049, 1069
MboII GAAGA 5 cut(s) 1012, 1093, 1102, 1105, 1171
MfeI CAATTG 1 cut(s) 1333
MflI RGATCY 5 cut(s) 183, 223, 364, 1083, 1403
MhlI GDGCHC 8 cut(s) 298, 418, 612, 698, 774, 830, 995, 1315
MluCI AATT 9 cut(s) 244, 317, 764, 815, 1037, 1145, 1323, 1333, 1365
MlyI GAGTC 2 cut(s) 387, 1190
Mph1103I ATGCAT 1 cut(s) 1251
MroI TCCGGA 2 cut(s) 381, 1086
MroNI GCCGGC 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 1004
MseI TTAA 2 cut(s) 1362, 1368
MslI CAYNNNNRTG 2 cut(s) 278, 1047
MspA1I CMGCKG 3 cut(s) 443, 701, 795
MspI CCGG 6 cut(s) 382, 403, 647, 830, 1087, 1282
MspR9I CCNGG 4 cut(s) 735, 801, 830, 1067
MunI CAATTG 1 cut(s) 1333
MvaI CCWGG 3 cut(s) 735, 801, 1067
MvnI CGCG 1 cut(s) 1308
MwoI GCNNNNNNNGC 5 cut(s) 14, 525, 899, 1110, 1305
NaeI GCCGGC 1 cut(s) 648
NciI CCSGG 1 cut(s) 830
NcoI CCATGG 2 cut(s) 514, 1237
NdeI CATATG 1 cut(s) 410
NgoMIV GCCGGC 1 cut(s) 646
NlaIII CATG 8 cut(s) 160, 277, 518, 523, 1241, 1249, 1265, 1390
NlaIV GGNNCC 6 cut(s) 237, 588, 645, 828, 977, 1405
NmeAIII GCCGAG 2 cut(s) 416, 722
NmuCI GTSAC 1 cut(s) 1049
NsbI TGCGCA 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 1251
NspI RCATGY 2 cut(s) 160, 1249
PdiI GCCGGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 1004
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 2 cut(s) 520, 1352
PinAI ACCGGT 1 cut(s) 1281
PkrI GCNGC 7 cut(s) 7, 442, 530, 727, 730, 794, 1115
PleI GAGTC 2 cut(s) 386, 1190
PpsI GAGTC 2 cut(s) 386, 1190
Psp124BI GAGCTC 1 cut(s) 995
Psp6I CCWGG 3 cut(s) 733, 799, 1065
PspEI GGTNACC 1 cut(s) 1049
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 3 cut(s) 733, 799, 1065
PspN4I GGNNCC 6 cut(s) 237, 588, 645, 828, 977, 1405
PspOMI GGGCCC 1 cut(s) 826
PspPI GGNCC 7 cut(s) 782, 797, 826, 827, 896, 914, 932
PstI CTGCAG 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 498
PsuI RGATCY 5 cut(s) 183, 223, 364, 1083, 1403
RsaI GTAC 4 cut(s) 372, 428, 588, 966
RsaNI GTAC 4 cut(s) 371, 427, 587, 965
RseI CAYNNNNRTG 2 cut(s) 278, 1047
SacI GAGCTC 1 cut(s) 995
SalI GTCGAC 1 cut(s) 1227
SaqAI TTAA 2 cut(s) 1362, 1368
SatI GCNGC 7 cut(s) 6, 441, 529, 726, 729, 793, 1114
Sau96I GGNCC 7 cut(s) 782, 797, 826, 827, 896, 914, 932
SchI GAGTC 2 cut(s) 387, 1190
ScrFI CCNGG 4 cut(s) 735, 801, 830, 1067
SduI GDGCHC 8 cut(s) 298, 418, 612, 698, 774, 830, 995, 1315
SfaNI GCATC 5 cut(s) 144, 880, 1177, 1192, 1348
SfcI CTRYAG 2 cut(s) 777, 939
SgrAI CRCCGGYG 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 278, 1047
SmlI CTYRAG 1 cut(s) 663
SmoI CTYRAG 1 cut(s) 663
Sse9I AATT 9 cut(s) 244, 317, 764, 815, 1037, 1145, 1323, 1333, 1365
SspMI CTAG 3 cut(s) 756, 1224, 1317
SstI GAGCTC 1 cut(s) 995
StyD4I CCNGG 4 cut(s) 733, 799, 828, 1065
StyI CCWWGG 5 cut(s) 514, 979, 1128, 1237, 1316
TaaI ACNGT 6 cut(s) 22, 111, 259, 485, 870, 955
TaiI ACGT 2 cut(s) 399, 424
TaqI TCGA 7 cut(s) 418, 453, 459, 510, 603, 631, 1228
TasI AATT 9 cut(s) 244, 317, 764, 815, 1037, 1145, 1323, 1333, 1365
TatI WGTACW 2 cut(s) 370, 426
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 1362, 1368
Tru9I TTAA 2 cut(s) 1362, 1368
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 1 cut(s) 1049
TseI GCWGC 6 cut(s) 440, 528, 725, 728, 792, 1113
Tsp45I GTSAC 1 cut(s) 1049
TspDTI ATGAA 1 cut(s) 1031
TspGWI ACGGA 3 cut(s) 155, 228, 689
TspRI CASTG 1 cut(s) 585
Van91I CCANNNNNTGG 2 cut(s) 520, 1352
XapI RAATTY 2 cut(s) 244, 1037
XceI RCATGY 2 cut(s) 160, 1249
XcmI CCANNNNNNNNNTGG 2 cut(s) 521, 1353
XmaJI CCTAGG 1 cut(s) 1316
XmiI GTMKAC 1 cut(s) 1228
XmnI GAANNNNTTC 1 cut(s) 1004
XspI CTAG 3 cut(s) 756, 1224, 1317
Zsp2I ATGCAT 1 cut(s) 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.