Rmu_sc0001814.1_g000019

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001814.1
OG0000123
Physical Location & Seq
Forward (+)
105083 .. 107556
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001814.1_g000019.1.cds

Sequence Viewer

Length: 1536 bp
atgaaggtggtccggccggaatcgtgcaagaatcgtgctgaaggagcgtgggtgtccacaagggaagcatggaatcctgttaacagtccggtggccggattccgatcaccggtcgccggagcccggggccggccgctggatgcatgtgacttaacattatgtcgcagacccatctttaatccaaaacatgtcatcgagagctctgctataaagagatttccgagcgggcacagaaaccagaaatatcagcgacggttgcctcattttactaccctcacatacgaccttggagaggatgctatccacgactcgatttttaacctctgtggccggcttttgtccaagaaggcggtggtgatcccgtcgttctcggcggcgatctccaatatatggggattgaaggagagggttttgattctacaggaggaggaggatgtcttcgtcttccaattcaaggaaagagaggtgaagaatcagatcctggctgggggtccatggttttacaacaactccatgctgctgttggccgactatgacggcatctttgctctcgaggcggcgtcggtgcacctccttgagatttggatggcagtgaagggtttgcgcattgctatgcgcaacgagaaagcgttaacgttaattggcagagtggtaaggagcttcgttcgggttgatcagggggcggtgcagtggaaggatcggattcaacgggttcgtgtggtgcaggacattcgtcggaggatctgggcacgacagacctttgaattttcgtccactgtctcggtggtggtggagctccagtatgaaaagtgtcacggcctctgttcggcgtgcaactttttcggtcatggagatggtgtctgtgatcgaggactagagaccgaggagctgccattggcggtgtcgggccgagaggggttggatacgaacatggaggtgttgggtttggcatcgaggtcgccgatctctatgacggcggttgtcggcccagggatgtcctctgggccgtcggcggggatgccagatgctgggcttagggagatgatggctggatcgacgtcggggacagaaggtgcggcgttggggactgctgcagctgcagtgttgttggctccagaaaaaatggcaggaaaccctaattttgaattagggttgaccgctgttttgactgggccagggatgaatgtggttgggccgggtccaatttctgaaagggcatgcacagtgggctttgctgatgggcctattcctgctggacttatctctgctgggtctatttctgttgatttacacaccaaattgggtgtacgaaagaagcaattcaagcctagtttggcgataatacctcgggaatttcagcttggtgagttggtggaagttccgatttctatggggccagctccaaagaaaaggggaagggttattccttctggaagccagattaagcgtacttccacaaaggagaaagaggaaggtaacattataggtgaggatataagctccatctcgaaagggaatgagctgtctattgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

511

Amino Acids

55.43

Weight (kDa)

9.07

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1061
Acc16I TGCGCA 2 cut(s) 605, 617
AccB7I CCANNNNNTGG 2 cut(s) 390, 1028
AccBSI CCGCTC 1 cut(s) 225
AclI AACGTT 1 cut(s) 635
AclWI GGATC 5 cut(s) 352, 472, 705, 749, 1060
AcoI YGGCCR 5 cut(s) 14, 93, 131, 328, 525
AcsI RAATTY 2 cut(s) 764, 1352
AcuI CTGAAG 1 cut(s) 60
AcyI GRCGYC 2 cut(s) 560, 1058
AfaI GTAC 2 cut(s) 1308, 1450
AflIII ACRYGT 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 109
AgsI TTSAA 6 cut(s) 400, 454, 707, 764, 1145, 1324
AjnI CCWGG 3 cut(s) 480, 988, 1174
AjuI GAANNNNNNNTTGG 2 cut(s) 1344, 1376
AluBI AGCT 9 cut(s) 201, 660, 796, 889, 1097, 1360, 1400, 1500, 1522
AluI AGCT 9 cut(s) 201, 660, 796, 889, 1097, 1360, 1400, 1500, 1522
Alw21I GWGCWC 3 cut(s) 203, 570, 798
Alw26I GTCTC 2 cut(s) 784, 872
Alw44I GTGCAC 1 cut(s) 566
AlwI GGATC 5 cut(s) 352, 472, 705, 749, 1060
AlwNI CAGNNNCTG 2 cut(s) 481, 1028
Ama87I CYCGRG 3 cut(s) 123, 551, 1347
ApaLI GTGCAC 1 cut(s) 566
ApeKI GCWGC 5 cut(s) 517, 889, 1091, 1094, 1097
ApoI RAATTY 2 cut(s) 764, 1352
ArsI GACNNNNNNTTYG 4 cut(s) 527, 559, 1147, 1179
AsiGI ACCGGT 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 1319
AspLEI GCGC 2 cut(s) 606, 618
AsuC2I CCSGG 3 cut(s) 124, 125, 1197
AsuHPI GGTGA 5 cut(s) 99, 367, 478, 1376, 1499
AvaI CYCGRG 3 cut(s) 123, 551, 1347
AvaII GGWCC 3 cut(s) 10, 491, 1199
BaeGI GKGCMC 3 cut(s) 231, 570, 751
BanII GRGCYC 3 cut(s) 124, 203, 798
BbsI GAAGAC 2 cut(s) 430, 436
Bbv12I GWGCWC 3 cut(s) 203, 570, 798
BbvI GCAGC 5 cut(s) 504, 876, 1078, 1084, 1106
BccI CCATC 6 cut(s) 179, 580, 848, 1039, 1232, 1511
BceAI ACGGC 4 cut(s) 553, 832, 990, 991
BcgI CGANNNNNNTGC 8 cut(s) 185, 219, 713, 747, 823, 857, 939, 973
BciT130I CCWGG 3 cut(s) 482, 990, 1176
BciVI GTATCC 1 cut(s) 916
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 3 cut(s) 124, 125, 1197
BcoDI GTCTC 2 cut(s) 784, 872
BfaI CTAG 2 cut(s) 875, 1329
BfmI CTRYAG 3 cut(s) 419, 1092, 1098
BfuI GTATCC 1 cut(s) 916
BisI GCNGC 9 cut(s) 134, 375, 518, 558, 890, 1077, 1092, 1095, 1098
BlsI GCNGC 9 cut(s) 135, 376, 519, 559, 891, 1078, 1093, 1096, 1099
Bme1390I CCNGG 6 cut(s) 124, 125, 482, 990, 1176, 1197
Bme18I GGWCC 3 cut(s) 10, 491, 1199
BmeT110I CYCGRG 3 cut(s) 123, 551, 1347
BmiI GGNNCC 6 cut(s) 121, 128, 492, 1113, 1200, 1395
BmrFI CCNGG 6 cut(s) 124, 125, 482, 990, 1176, 1197
BmrI ACTGGG 1 cut(s) 1179
BmsI GCATC 6 cut(s) 130, 286, 549, 959, 1008, 1015
BmuI ACTGGG 1 cut(s) 1179
BoxI GACNNNNGTC 1 cut(s) 732
BpiI GAAGAC 2 cut(s) 430, 436
BpmI CTGGAG 2 cut(s) 782, 1098
Bpu10I CCTNAGC 1 cut(s) 1034
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 3 cut(s) 124, 125, 1197
BsaBI GATNNNNATC 1 cut(s) 103
BsaHI GRCGYC 2 cut(s) 560, 1058
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 9 cut(s) 123, 124, 286, 494, 882, 988, 989, 1175, 1346
BsaWI WCCGGW 2 cut(s) 88, 109
BsaXI ACNNNNNCTCC 8 cut(s) 36, 66, 494, 524, 785, 815, 843, 873
Bse118I RCCGGY 3 cut(s) 109, 129, 330
Bse1I ACTGG 2 cut(s) 799, 1174
Bse3DI GCAATG 1 cut(s) 606
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 3 cut(s) 482, 990, 1176
BseDI CCNNGG 9 cut(s) 123, 124, 286, 494, 882, 988, 989, 1175, 1346
BseGI GGATG 7 cut(s) 145, 301, 439, 591, 999, 1023, 1185
BseJI GATNNNNATC 1 cut(s) 103
BseMI GCAATG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 799, 1174
BseRI GAGGAG 3 cut(s) 440, 443, 899
BseSI GKGCMC 3 cut(s) 231, 570, 751
BseX3I CGGCCG 2 cut(s) 14, 131
BseXI GCAGC 5 cut(s) 504, 876, 1078, 1084, 1106
BseYI CCCAGC 3 cut(s) 485, 1028, 1268
BsgI GTGCAG 2 cut(s) 707, 743
Bsh1285I CGRYCG 3 cut(s) 17, 114, 134
BshTI ACCGGT 1 cut(s) 109
BsiEI CGRYCG 3 cut(s) 17, 114, 134
BsiHKAI GWGCWC 3 cut(s) 203, 570, 798
BsiHKCI CYCGRG 3 cut(s) 123, 551, 1347
BslFI GGGAC 2 cut(s) 1078, 1099
BsmAI GTCTC 2 cut(s) 784, 872
BsmFI GGGAC 2 cut(s) 1078, 1099
Bso31I GGTCTC 1 cut(s) 872
BsoBI CYCGRG 3 cut(s) 123, 551, 1347
Bsp1286I GDGCHC 6 cut(s) 124, 203, 231, 570, 751, 798
Bsp19I CCATGG 1 cut(s) 494
BspLI GGNNCC 6 cut(s) 121, 128, 492, 1113, 1200, 1395
BspMAI CTGCAG 2 cut(s) 1096, 1102
BspPI GGATC 5 cut(s) 352, 472, 705, 749, 1060
BspTNI GGTCTC 1 cut(s) 872
BsrBI CCGCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 3 cut(s) 109, 129, 330
BsrI ACTGG 2 cut(s) 799, 1174
BssAI RCCGGY 3 cut(s) 109, 129, 330
BssECI CCNNGG 9 cut(s) 123, 124, 286, 494, 882, 988, 989, 1175, 1346
BssNI GRCGYC 2 cut(s) 560, 1058
BssT1I CCWWGG 2 cut(s) 286, 494
Bst2UI CCWGG 3 cut(s) 482, 990, 1176
Bst4CI ACNGT 4 cut(s) 86, 255, 778, 1225
BstACI GRCGYC 2 cut(s) 560, 1058
BstC8I GCNNGC 6 cut(s) 131, 227, 332, 832, 1219, 1398
BstDEI CTNAG 1 cut(s) 1034
BstDSI CCRYGG 1 cut(s) 494
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 7 cut(s) 145, 301, 439, 591, 999, 1023, 1185
BstHHI GCGC 2 cut(s) 606, 618
BstMAI GTCTC 2 cut(s) 784, 872
BstMCI CGRYCG 3 cut(s) 17, 114, 134
BstMWI GCNNNNNNNGC 6 cut(s) 44, 256, 554, 1097, 1227, 1324
BstNI CCWGG 3 cut(s) 482, 990, 1176
BstNSI RCATGY 3 cut(s) 147, 191, 1221
BstPAI GACNNNNGTC 1 cut(s) 732
BstSCI CCNGG 6 cut(s) 122, 123, 480, 988, 1174, 1195
BstSFI CTRYAG 3 cut(s) 419, 1092, 1098
BstSLI GKGCMC 3 cut(s) 231, 570, 751
BstV1I GCAGC 5 cut(s) 504, 876, 1078, 1084, 1106
BstV2I GAAGAC 2 cut(s) 430, 436
BstX2I RGATCY 2 cut(s) 477, 741
BstYI RGATCY 2 cut(s) 477, 741
BstZI CGGCCG 2 cut(s) 14, 131
BsuI GTATCC 1 cut(s) 916
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 7 cut(s) 145, 301, 439, 591, 999, 1023, 1185
BtsI GCAGTG 3 cut(s) 597, 695, 1107
BtsIMutI CAGTG 5 cut(s) 597, 695, 774, 1107, 1230
Cac8I GCNNGC 6 cut(s) 131, 227, 332, 832, 1219, 1398
CaiI CAGNNNCTG 2 cut(s) 481, 1028
CfoI GCGC 2 cut(s) 606, 618
Cfr10I RCCGGY 3 cut(s) 109, 129, 330
Cfr9I CCCGGG 1 cut(s) 123
CseI GACGC 1 cut(s) 549
Csp6I GTAC 2 cut(s) 1307, 1449
CspAI ACCGGT 1 cut(s) 109
CviAII CATG 8 cut(s) 69, 144, 188, 495, 514, 848, 931, 1218
CviQI GTAC 2 cut(s) 1307, 1449
DdeI CTNAG 1 cut(s) 1034
EaeI YGGCCR 5 cut(s) 14, 93, 131, 328, 525
EagI CGGCCG 2 cut(s) 14, 131
Ecl136II GAGCTC 2 cut(s) 201, 796
EclXI CGGCCG 2 cut(s) 14, 131
Eco130I CCWWGG 2 cut(s) 286, 494
Eco24I GRGCYC 3 cut(s) 124, 203, 798
Eco31I GGTCTC 1 cut(s) 872
Eco47I GGWCC 3 cut(s) 10, 491, 1199
Eco52I CGGCCG 2 cut(s) 14, 131
Eco53kI GAGCTC 2 cut(s) 201, 796
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 3 cut(s) 123, 551, 1347
EcoICRI GAGCTC 2 cut(s) 201, 796
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 480, 988, 1174
EcoT14I CCWWGG 2 cut(s) 286, 494
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 3 cut(s) 124, 203, 798
ErhI CCWWGG 2 cut(s) 286, 494
FaeI CATG 8 cut(s) 72, 147, 191, 498, 517, 851, 934, 1221
FaqI GGGAC 2 cut(s) 1078, 1099
FatI CATG 8 cut(s) 68, 143, 187, 494, 513, 847, 930, 1217
FauI CCCGC 2 cut(s) 218, 1006
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 9 cut(s) 134, 375, 518, 558, 890, 1077, 1092, 1095, 1098
FokI GGATG 7 cut(s) 152, 308, 446, 598, 1006, 1030, 1192
FriOI GRGCYC 3 cut(s) 124, 203, 798
FseI GGCCGGCC 1 cut(s) 133
Fsp4HI GCNGC 9 cut(s) 134, 375, 518, 558, 890, 1077, 1092, 1095, 1098
FspBI CTAG 2 cut(s) 875, 1329
FspI TGCGCA 2 cut(s) 605, 617
GlaI GCGC 2 cut(s) 605, 617
GluI GCNGC 9 cut(s) 134, 375, 518, 558, 890, 1077, 1092, 1095, 1098
GsaI CCCAGC 3 cut(s) 489, 1032, 1272
GsuI CTGGAG 2 cut(s) 782, 1098
HgaI GACGC 1 cut(s) 549
HhaI GCGC 2 cut(s) 606, 618
Hin1I GRCGYC 2 cut(s) 560, 1058
Hin1II CATG 8 cut(s) 72, 147, 191, 498, 517, 851, 934, 1221
Hin6I GCGC 2 cut(s) 604, 616
HinP1I GCGC 2 cut(s) 604, 616
HincII GTYRAC 3 cut(s) 82, 633, 1155
HindII GTYRAC 3 cut(s) 82, 633, 1155
HinfI GANTC 8 cut(s) 20, 31, 73, 99, 308, 415, 472, 703
HpaI GTTAAC 2 cut(s) 82, 633
HphI GGTGA 5 cut(s) 99, 367, 478, 1376, 1499
Hpy166II GTNNAC 7 cut(s) 57, 82, 568, 633, 774, 1155, 1307
Hpy188I TCNGA 7 cut(s) 104, 222, 477, 702, 738, 1210, 1383
Hpy188III TCNNGA 6 cut(s) 196, 551, 1115, 1349, 1431, 1507
Hpy8I GTNNAC 7 cut(s) 57, 82, 568, 633, 774, 1155, 1307
Hpy99I CGWCG 7 cut(s) 255, 367, 565, 738, 1012, 1060, 1063
HpyAV CCTTC 9 cut(s) 35, 340, 394, 589, 688, 1064, 1410, 1437, 1466
HpyCH4III ACNGT 4 cut(s) 86, 255, 778, 1225
HpyCH4IV ACGT 2 cut(s) 635, 1058
HpyCH4V TGCA 9 cut(s) 27, 143, 568, 688, 724, 834, 1094, 1100, 1221
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 256, 554, 1097, 1227, 1324
HpyF3I CTNAG 1 cut(s) 1034
HpySE526I ACGT 2 cut(s) 635, 1058
Hsp92I GRCGYC 2 cut(s) 560, 1058
Hsp92II CATG 8 cut(s) 72, 147, 191, 498, 517, 851, 934, 1221
HspAI GCGC 2 cut(s) 604, 616
KroI GCCGGC 2 cut(s) 129, 330
KroNI GCCGGC 2 cut(s) 131, 332
Ksp22I TGATCA 1 cut(s) 673
KspAI GTTAAC 2 cut(s) 82, 633
LmnI GCTCC 9 cut(s) 44, 119, 657, 793, 801, 886, 1117, 1405, 1505
Lsp1109I GCAGC 5 cut(s) 504, 876, 1078, 1084, 1106
LweI GCATC 6 cut(s) 130, 286, 549, 959, 1008, 1015
MaeI CTAG 2 cut(s) 875, 1329
MaeII ACGT 2 cut(s) 635, 1058
MaeIII GTNAC 3 cut(s) 146, 812, 1475
MbiI CCGCTC 1 cut(s) 225
MboII GAAGA 3 cut(s) 430, 436, 481
MflI RGATCY 2 cut(s) 477, 741
MhlI GDGCHC 6 cut(s) 124, 203, 231, 570, 751, 798
MluCI AATT 9 cut(s) 449, 639, 764, 1138, 1145, 1203, 1298, 1319, 1352
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 2 cut(s) 716, 900
Mph1103I ATGCAT 1 cut(s) 145
MroNI GCCGGC 2 cut(s) 129, 330
MroXI GAANNNNTTC 1 cut(s) 1319
MseI TTAA 7 cut(s) 81, 152, 177, 318, 632, 638, 1443
MslI CAYNNNNRTG 3 cut(s) 611, 852, 935
MspA1I CMGCKG 3 cut(s) 136, 1097, 1160
MspR9I CCNGG 6 cut(s) 124, 125, 482, 990, 1176, 1197
MvaI CCWGG 3 cut(s) 482, 990, 1176
MwoI GCNNNNNNNGC 6 cut(s) 44, 256, 554, 1097, 1227, 1324
NaeI GCCGGC 2 cut(s) 131, 332
NciI CCSGG 3 cut(s) 124, 125, 1197
NcoI CCATGG 1 cut(s) 494
NgoMIV GCCGGC 2 cut(s) 129, 330
NlaIII CATG 8 cut(s) 72, 147, 191, 498, 517, 851, 934, 1221
NlaIV GGNNCC 6 cut(s) 121, 128, 492, 1113, 1200, 1395
NmeAIII GCCGAG 2 cut(s) 350, 935
NmuCI GTSAC 2 cut(s) 146, 812
NsbI TGCGCA 2 cut(s) 605, 617
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 3 cut(s) 147, 191, 1221
PaeI GCATGC 1 cut(s) 1221
PaeR7I CTCGAG 1 cut(s) 551
PasI CCCWGGG 1 cut(s) 989
PciI ACATGT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 959
PdiI GCCGGC 2 cut(s) 131, 332
PdmI GAANNNNTTC 1 cut(s) 1319
PfeI GAWTC 7 cut(s) 20, 31, 73, 99, 415, 472, 703
PflMI CCANNNNNTGG 2 cut(s) 390, 1028
PinAI ACCGGT 1 cut(s) 109
PkrI GCNGC 9 cut(s) 135, 376, 519, 559, 891, 1078, 1093, 1096, 1099
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PscI ACATGT 1 cut(s) 187
PshAI GACNNNNGTC 1 cut(s) 732
Psp124BI GAGCTC 2 cut(s) 203, 798
Psp1406I AACGTT 1 cut(s) 635
Psp6I CCWGG 3 cut(s) 480, 988, 1174
PspFI CCCAGC 3 cut(s) 485, 1028, 1268
PspGI CCWGG 3 cut(s) 480, 988, 1174
PspN4I GGNNCC 6 cut(s) 121, 128, 492, 1113, 1200, 1395
PstI CTGCAG 2 cut(s) 1096, 1102
PstNI CAGNNNCTG 2 cut(s) 481, 1028
PsuI RGATCY 2 cut(s) 477, 741
PvuII CAGCTG 1 cut(s) 1097
RigI GGCCGGCC 1 cut(s) 133
RsaI GTAC 2 cut(s) 1308, 1450
RsaNI GTAC 2 cut(s) 1307, 1449
RseI CAYNNNNRTG 3 cut(s) 611, 852, 935
SacI GAGCTC 2 cut(s) 203, 798
SaqAI TTAA 7 cut(s) 81, 152, 177, 318, 632, 638, 1443
SatI GCNGC 9 cut(s) 134, 375, 518, 558, 890, 1077, 1092, 1095, 1098
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 6 cut(s) 124, 125, 482, 990, 1176, 1197
SduI GDGCHC 6 cut(s) 124, 203, 231, 570, 751, 798
SfaNI GCATC 6 cut(s) 130, 286, 549, 959, 1008, 1015
SfcI CTRYAG 3 cut(s) 419, 1092, 1098
Sfr274I CTCGAG 1 cut(s) 551
SinI GGWCC 3 cut(s) 10, 491, 1199
SlaI CTCGAG 1 cut(s) 551
SmaI CCCGGG 1 cut(s) 125
SmiMI CAYNNNNRTG 3 cut(s) 611, 852, 935
SmlI CTYRAG 2 cut(s) 551, 575
SmoI CTYRAG 2 cut(s) 551, 575
SphI GCATGC 1 cut(s) 1221
Sse9I AATT 9 cut(s) 449, 639, 764, 1138, 1145, 1203, 1298, 1319, 1352
SspMI CTAG 2 cut(s) 875, 1329
SstI GAGCTC 2 cut(s) 203, 798
StyD4I CCNGG 6 cut(s) 122, 123, 480, 988, 1174, 1195
StyI CCWWGG 2 cut(s) 286, 494
TaaI ACNGT 4 cut(s) 86, 255, 778, 1225
TaiI ACGT 2 cut(s) 638, 1061
TaqI TCGA 7 cut(s) 195, 311, 552, 868, 953, 1055, 1508
TaqII GACCGA 2 cut(s) 833, 896
TasI AATT 9 cut(s) 449, 639, 764, 1138, 1145, 1203, 1298, 1319, 1352
TauI GCSGC 4 cut(s) 136, 377, 560, 1079
TfiI GAWTC 7 cut(s) 20, 31, 73, 99, 415, 472, 703
Tru1I TTAA 7 cut(s) 81, 152, 177, 318, 632, 638, 1443
Tru9I TTAA 7 cut(s) 81, 152, 177, 318, 632, 638, 1443
TscAI CASTG 5 cut(s) 597, 695, 781, 1107, 1230
TseFI GTSAC 2 cut(s) 146, 812
TseI GCWGC 5 cut(s) 517, 889, 1091, 1094, 1097
Tsp45I GTSAC 2 cut(s) 146, 812
TspDTI ATGAA 3 cut(s) 17, 819, 1196
TspMI CCCGGG 1 cut(s) 123
TspRI CASTG 5 cut(s) 597, 695, 781, 1107, 1230
Van91I CCANNNNNTGG 2 cut(s) 390, 1028
VneI GTGCAC 1 cut(s) 566
VpaK11BI GGWCC 3 cut(s) 10, 491, 1199
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 2 cut(s) 764, 1352
XceI RCATGY 3 cut(s) 147, 191, 1221
XcmI CCANNNNNNNNNTGG 3 cut(s) 349, 520, 781
XhoI CTCGAG 1 cut(s) 551
XmaI CCCGGG 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 1319
XspI CTAG 2 cut(s) 875, 1329
ZraI GACGTC 1 cut(s) 1059
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.