Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 215, 239 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 165 |
| AccBSI | CCGCTC | 1 cut(s) | 335 |
| AciI | CCGC | 6 cut(s) | 5, 63, 106, 149, 333, 364 |
| AclWI | GGATC | 1 cut(s) | 184 |
| AcoI | YGGCCR | 1 cut(s) | 300 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 165, 199 |
| AflII | CTTAAG | 1 cut(s) | 349 |
| AgsI | TTSAA | 2 cut(s) | 224, 229 |
| Alw21I | GWGCWC | 1 cut(s) | 135 |
| Alw26I | GTCTC | 1 cut(s) | 5 |
| AlwI | GGATC | 1 cut(s) | 184 |
| AoxI | GGCC | 2 cut(s) | 300, 330 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 197, 229 |
| AspS9I | GGNCC | 1 cut(s) | 266 |
| AvaII | GGWCC | 1 cut(s) | 266 |
| Bbv12I | GWGCWC | 1 cut(s) | 135 |
| BccI | CCATC | 3 cut(s) | 145, 305, 350 |
| BcoDI | GTCTC | 1 cut(s) | 5 |
| BfrI | CTTAAG | 1 cut(s) | 349 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 60 |
| BisI | GCNGC | 3 cut(s) | 107, 150, 333 |
| BlsI | GCNGC | 3 cut(s) | 108, 151, 334 |
| Bme18I | GGWCC | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 1 cut(s) | 266 |
| BmiI | GGNNCC | 2 cut(s) | 21, 267 |
| BmsI | GCATC | 2 cut(s) | 61, 66 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 1 cut(s) | 269 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 165, 199 |
| BseDI | CCNNGG | 1 cut(s) | 269 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 165, 199 |
| BseRI | GAGGAG | 3 cut(s) | 23, 53, 215 |
| BsgI | GTGCAG | 1 cut(s) | 12 |
| BshFI | GGCC | 2 cut(s) | 302, 332 |
| BsiHKAI | GWGCWC | 1 cut(s) | 135 |
| BslFI | GGGAC | 1 cut(s) | 183 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 165, 199 |
| BsmAI | GTCTC | 1 cut(s) | 5 |
| BsmBI | CGTCTC | 1 cut(s) | 5 |
| BsmFI | GGGAC | 1 cut(s) | 183 |
| BsnI | GGCC | 2 cut(s) | 302, 332 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| Bsp143I | GATC | 2 cut(s) | 153, 189 |
| Bsp19I | CCATGG | 1 cut(s) | 269 |
| BspACI | CCGC | 6 cut(s) | 5, 63, 106, 149, 333, 364 |
| BspANI | GGCC | 2 cut(s) | 302, 332 |
| BspLI | GGNNCC | 2 cut(s) | 21, 267 |
| BspPI | GGATC | 1 cut(s) | 184 |
| BspTI | CTTAAG | 1 cut(s) | 349 |
| BsrBI | CCGCTC | 1 cut(s) | 335 |
| BssECI | CCNNGG | 1 cut(s) | 269 |
| BssMI | GATC | 2 cut(s) | 153, 189 |
| BssT1I | CCWWGG | 1 cut(s) | 269 |
| Bst4CI | ACNGT | 2 cut(s) | 16, 114 |
| BstAFI | CTTAAG | 1 cut(s) | 349 |
| BstC8I | GCNNGC | 2 cut(s) | 300, 337 |
| BstDEI | CTNAG | 2 cut(s) | 117, 173 |
| BstDSI | CCRYGG | 1 cut(s) | 269 |
| BstKTI | GATC | 2 cut(s) | 156, 192 |
| BstMAI | GTCTC | 1 cut(s) | 5 |
| BstMBI | GATC | 2 cut(s) | 153, 189 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 60 |
| BsuRI | GGCC | 2 cut(s) | 302, 332 |
| BtgI | CCRYGG | 1 cut(s) | 269 |
| BtgZI | GCGATG | 1 cut(s) | 89 |
| Cac8I | GCNNGC | 2 cut(s) | 300, 337 |
| Cfr13I | GGNCC | 1 cut(s) | 266 |
| CviAII | CATG | 3 cut(s) | 80, 270, 289 |
| CviJI | RGCY | 6 cut(s) | 20, 54, 109, 239, 302, 332 |
| CviKI_1 | RGCY | 6 cut(s) | 20, 54, 109, 239, 302, 332 |
| DdeI | CTNAG | 2 cut(s) | 117, 173 |
| DpnI | GATC | 2 cut(s) | 155, 191 |
| DpnII | GATC | 2 cut(s) | 153, 189 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 215, 239 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 215, 239 |
| EaeI | YGGCCR | 1 cut(s) | 300 |
| EciI | GGCGGA | 2 cut(s) | 20, 78 |
| Eco130I | CCWWGG | 1 cut(s) | 269 |
| Eco47I | GGWCC | 1 cut(s) | 266 |
| EcoT14I | CCWWGG | 1 cut(s) | 269 |
| EcoT22I | ATGCAT | 1 cut(s) | 81 |
| ErhI | CCWWGG | 1 cut(s) | 269 |
| Esp3I | CGTCTC | 1 cut(s) | 5 |
| FaeI | CATG | 3 cut(s) | 83, 273, 292 |
| FaiI | YATR | 6 cut(s) | 81, 271, 279, 290, 309, 357 |
| FaqI | GGGAC | 1 cut(s) | 183 |
| FatI | CATG | 3 cut(s) | 79, 269, 288 |
| Fnu4HI | GCNGC | 3 cut(s) | 107, 150, 333 |
| Fsp4HI | GCNGC | 3 cut(s) | 107, 150, 333 |
| GluI | GCNGC | 3 cut(s) | 107, 150, 333 |
| HaeIII | GGCC | 2 cut(s) | 302, 332 |
| Hin1II | CATG | 3 cut(s) | 83, 273, 292 |
| HinfI | GANTC | 2 cut(s) | 83, 253 |
| Hpy188I | TCNGA | 1 cut(s) | 194 |
| HpyAV | CCTTC | 2 cut(s) | 33, 115 |
| HpyCH4III | ACNGT | 2 cut(s) | 16, 114 |
| HpyCH4V | TGCA | 2 cut(s) | 29, 79 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 60 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 173 |
| Hsp92II | CATG | 3 cut(s) | 83, 273, 292 |
| Kzo9I | GATC | 2 cut(s) | 153, 189 |
| LmnI | GCTCC | 3 cut(s) | 25, 138, 344 |
| LpnPI | CCDG | 3 cut(s) | 220, 246, 284 |
| LweI | GCATC | 2 cut(s) | 61, 66 |
| MalI | GATC | 2 cut(s) | 155, 191 |
| MbiI | CCGCTC | 1 cut(s) | 335 |
| MboI | GATC | 2 cut(s) | 153, 189 |
| MboII | GAAGA | 2 cut(s) | 80, 205 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MluCI | AATT | 2 cut(s) | 224, 283 |
| MmeI | TCCRAC | 1 cut(s) | 217 |
| MnlI | CCTC | 4 cut(s) | 31, 34, 193, 196 |
| Mph1103I | ATGCAT | 1 cut(s) | 81 |
| MseI | TTAA | 1 cut(s) | 350 |
| MspCI | CTTAAG | 1 cut(s) | 349 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 60 |
| NcoI | CCATGG | 1 cut(s) | 269 |
| NdeII | GATC | 2 cut(s) | 153, 189 |
| NlaIII | CATG | 3 cut(s) | 83, 273, 292 |
| NlaIV | GGNNCC | 2 cut(s) | 21, 267 |
| NmeAIII | GCCGAG | 1 cut(s) | 125 |
| NsiI | ATGCAT | 1 cut(s) | 81 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 213 |
| PfeI | GAWTC | 2 cut(s) | 83, 253 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 165 |
| PkrI | GCNGC | 3 cut(s) | 108, 151, 334 |
| PspN4I | GGNNCC | 2 cut(s) | 21, 267 |
| PspPI | GGNCC | 1 cut(s) | 266 |
| SaqAI | TTAA | 1 cut(s) | 350 |
| SatI | GCNGC | 3 cut(s) | 107, 150, 333 |
| Sau3AI | GATC | 2 cut(s) | 153, 189 |
| Sau96I | GGNCC | 1 cut(s) | 266 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SetI | ASST | 4 cut(s) | 34, 99, 126, 356 |
| SfaNI | GCATC | 2 cut(s) | 61, 66 |
| SinI | GGWCC | 1 cut(s) | 266 |
| SmlI | CTYRAG | 2 cut(s) | 326, 349 |
| SmoI | CTYRAG | 2 cut(s) | 326, 349 |
| Sse9I | AATT | 2 cut(s) | 224, 283 |
| SsiI | CCGC | 6 cut(s) | 5, 63, 106, 149, 333, 364 |
| StyI | CCWWGG | 1 cut(s) | 269 |
| TaaI | ACNGT | 2 cut(s) | 16, 114 |
| TasI | AATT | 2 cut(s) | 224, 283 |
| TauI | GCSGC | 3 cut(s) | 109, 152, 335 |
| TfiI | GAWTC | 2 cut(s) | 83, 253 |
| Tru1I | TTAA | 1 cut(s) | 350 |
| Tru9I | TTAA | 1 cut(s) | 350 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 165 |
| Vha464I | CTTAAG | 1 cut(s) | 349 |
| VpaK11BI | GGWCC | 1 cut(s) | 266 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 295 |
| Zsp2I | ATGCAT | 1 cut(s) | 81 |