Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 16 |
| AccB1I | GGYRCC | 1 cut(s) | 135 |
| AccBSI | CCGCTC | 1 cut(s) | 472 |
| AccIII | TCCGGA | 1 cut(s) | 483 |
| AciI | CCGC | 7 cut(s) | 133, 139, 283, 394, 472, 496, 530 |
| AclWI | GGATC | 2 cut(s) | 256, 453 |
| AcoI | YGGCCR | 2 cut(s) | 280, 297 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 30, 306, 415, 559 |
| AgsI | TTSAA | 2 cut(s) | 30, 514 |
| AjnI | CCWGG | 1 cut(s) | 543 |
| AluBI | AGCT | 2 cut(s) | 304, 346 |
| AluI | AGCT | 2 cut(s) | 304, 346 |
| Alw26I | GTCTC | 1 cut(s) | 427 |
| AlwI | GGATC | 2 cut(s) | 256, 453 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 349, 391 |
| Aor13HI | TCCGGA | 1 cut(s) | 483 |
| AoxI | GGCC | 4 cut(s) | 280, 297, 541, 562 |
| ApeKI | GCWGC | 2 cut(s) | 96, 549 |
| AspLEI | GCGC | 1 cut(s) | 426 |
| AspS9I | GGNCC | 3 cut(s) | 67, 541, 562 |
| AsuC2I | CCSGG | 1 cut(s) | 554 |
| AsuHPI | GGTGA | 2 cut(s) | 54, 332 |
| AsuNHI | GCTAGC | 1 cut(s) | 99 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BanI | GGYRCC | 1 cut(s) | 135 |
| BbsI | GAAGAC | 1 cut(s) | 12 |
| BbvCI | CCTCAGC | 1 cut(s) | 305 |
| BbvI | GCAGC | 2 cut(s) | 83, 536 |
| BccI | CCATC | 1 cut(s) | 106 |
| BciT130I | CCWGG | 1 cut(s) | 545 |
| BclI | TGATCA | 1 cut(s) | 255 |
| BcnI | CCSGG | 1 cut(s) | 554 |
| BcoDI | GTCTC | 1 cut(s) | 427 |
| BfaI | CTAG | 1 cut(s) | 100 |
| BisI | GCNGC | 4 cut(s) | 97, 134, 283, 550 |
| BlsI | GCNGC | 4 cut(s) | 98, 135, 284, 551 |
| Bme1390I | CCNGG | 2 cut(s) | 545, 554 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 541, 562 |
| BmiI | GGNNCC | 1 cut(s) | 137 |
| BmrFI | CCNGG | 2 cut(s) | 545, 554 |
| BmrI | ACTGGG | 1 cut(s) | 548 |
| BmsI | GCATC | 2 cut(s) | 120, 395 |
| BmtI | GCTAGC | 1 cut(s) | 103 |
| BmuI | ACTGGG | 1 cut(s) | 548 |
| BpiI | GAAGAC | 1 cut(s) | 12 |
| Bpu10I | CCTNAGC | 1 cut(s) | 305 |
| BpuEI | CTTGAG | 1 cut(s) | 172 |
| BpuMI | CCSGG | 1 cut(s) | 554 |
| Bsa29I | ATCGAT | 1 cut(s) | 403 |
| BsaJI | CCNNGG | 3 cut(s) | 70, 204, 544 |
| BsaWI | WCCGGW | 1 cut(s) | 483 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 175, 205, 304, 334, 461, 491 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 30, 306, 415, 559 |
| Bse118I | RCCGGY | 1 cut(s) | 526 |
| Bse1I | ACTGG | 3 cut(s) | 189, 464, 543 |
| BseAI | TCCGGA | 1 cut(s) | 483 |
| BseBI | CCWGG | 1 cut(s) | 545 |
| BseCI | ATCGAT | 1 cut(s) | 403 |
| BseDI | CCNNGG | 3 cut(s) | 70, 204, 544 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 30, 306, 415, 559 |
| BseMII | CTCAG | 1 cut(s) | 296 |
| BseNI | ACTGG | 3 cut(s) | 189, 464, 543 |
| BseRI | GAGGAG | 1 cut(s) | 19 |
| BseXI | GCAGC | 2 cut(s) | 83, 536 |
| BseYI | CCCAGC | 1 cut(s) | 369 |
| BshFI | GGCC | 4 cut(s) | 282, 299, 543, 564 |
| BshNI | GGYRCC | 1 cut(s) | 135 |
| BshVI | ATCGAT | 1 cut(s) | 403 |
| BsiSI | CCGG | 4 cut(s) | 484, 527, 553, 565 |
| BslFI | GGGAC | 1 cut(s) | 410 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 30, 306, 415, 559 |
| BsmAI | GTCTC | 1 cut(s) | 427 |
| BsmBI | CGTCTC | 1 cut(s) | 427 |
| BsmFI | GGGAC | 1 cut(s) | 410 |
| BsnI | GGCC | 4 cut(s) | 282, 299, 543, 564 |
| Bsp13I | TCCGGA | 1 cut(s) | 483 |
| Bsp143I | GATC | 3 cut(s) | 248, 255, 445 |
| Bsp19I | CCATGG | 2 cut(s) | 70, 204 |
| BspACI | CCGC | 7 cut(s) | 133, 139, 283, 394, 472, 496, 530 |
| BspANI | GGCC | 4 cut(s) | 282, 299, 543, 564 |
| BspCNI | CTCAG | 1 cut(s) | 297 |
| BspDI | ATCGAT | 1 cut(s) | 403 |
| BspEI | TCCGGA | 1 cut(s) | 483 |
| BspLI | GGNNCC | 1 cut(s) | 137 |
| BspOI | GCTAGC | 1 cut(s) | 103 |
| BspPI | GGATC | 2 cut(s) | 256, 453 |
| BspT107I | GGYRCC | 1 cut(s) | 135 |
| BsrBI | CCGCTC | 1 cut(s) | 472 |
| BsrFI | RCCGGY | 1 cut(s) | 526 |
| BsrI | ACTGG | 3 cut(s) | 189, 464, 543 |
| BssAI | RCCGGY | 1 cut(s) | 526 |
| BssECI | CCNNGG | 3 cut(s) | 70, 204, 544 |
| BssMI | GATC | 3 cut(s) | 248, 255, 445 |
| BssT1I | CCWWGG | 2 cut(s) | 70, 204 |
| Bst2UI | CCWGG | 1 cut(s) | 545 |
| BstC8I | GCNNGC | 1 cut(s) | 101 |
| BstDEI | CTNAG | 2 cut(s) | 231, 305 |
| BstDSI | CCRYGG | 2 cut(s) | 70, 204 |
| BstHHI | GCGC | 1 cut(s) | 426 |
| BstKTI | GATC | 3 cut(s) | 251, 258, 448 |
| BstMAI | GTCTC | 1 cut(s) | 427 |
| BstMBI | GATC | 3 cut(s) | 248, 255, 445 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 352, 469, 549 |
| BstNI | CCWGG | 1 cut(s) | 545 |
| BstNSI | RCATGY | 1 cut(s) | 430 |
| BstSCI | CCNGG | 2 cut(s) | 543, 552 |
| BstV1I | GCAGC | 2 cut(s) | 83, 536 |
| BstV2I | GAAGAC | 1 cut(s) | 12 |
| BstX2I | RGATCY | 1 cut(s) | 248 |
| BstYI | RGATCY | 1 cut(s) | 248 |
| Bsu15I | ATCGAT | 1 cut(s) | 403 |
| BsuRI | GGCC | 4 cut(s) | 282, 299, 543, 564 |
| BsuTUI | ATCGAT | 1 cut(s) | 403 |
| BtgI | CCRYGG | 2 cut(s) | 70, 204 |
| BtsIMutI | CAGTG | 1 cut(s) | 471 |
| Cac8I | GCNNGC | 1 cut(s) | 101 |
| CaiI | CAGNNNCTG | 2 cut(s) | 349, 391 |
| CfoI | GCGC | 1 cut(s) | 426 |
| Cfr10I | RCCGGY | 1 cut(s) | 526 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 541, 562 |
| ClaI | ATCGAT | 1 cut(s) | 403 |
| CseI | GACGC | 1 cut(s) | 377 |
| CviAII | CATG | 4 cut(s) | 71, 205, 238, 427 |
| DdeI | CTNAG | 2 cut(s) | 231, 305 |
| DpnI | GATC | 3 cut(s) | 250, 257, 447 |
| DpnII | GATC | 3 cut(s) | 248, 255, 445 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 16 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 16 |
| EaeI | YGGCCR | 2 cut(s) | 280, 297 |
| Eco130I | CCWWGG | 2 cut(s) | 70, 204 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 543 |
| EcoT14I | CCWWGG | 2 cut(s) | 70, 204 |
| ErhI | CCWWGG | 2 cut(s) | 70, 204 |
| Esp3I | CGTCTC | 1 cut(s) | 427 |
| FaeI | CATG | 4 cut(s) | 74, 208, 241, 430 |
| FaqI | GGGAC | 1 cut(s) | 410 |
| FatI | CATG | 4 cut(s) | 70, 204, 237, 426 |
| FauI | CCCGC | 3 cut(s) | 387, 489, 523 |
| FauNDI | CATATG | 1 cut(s) | 222 |
| FbaI | TGATCA | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 4 cut(s) | 97, 134, 283, 550 |
| Fsp4HI | GCNGC | 4 cut(s) | 97, 134, 283, 550 |
| FspBI | CTAG | 1 cut(s) | 100 |
| GlaI | GCGC | 1 cut(s) | 425 |
| GluI | GCNGC | 4 cut(s) | 97, 134, 283, 550 |
| GsaI | CCCAGC | 1 cut(s) | 373 |
| HaeIII | GGCC | 4 cut(s) | 282, 299, 543, 564 |
| HapII | CCGG | 4 cut(s) | 484, 527, 553, 565 |
| HgaI | GACGC | 1 cut(s) | 377 |
| HhaI | GCGC | 1 cut(s) | 426 |
| Hin1II | CATG | 4 cut(s) | 74, 208, 241, 430 |
| Hin6I | GCGC | 1 cut(s) | 424 |
| HinP1I | GCGC | 1 cut(s) | 424 |
| HincII | GTYRAC | 2 cut(s) | 524, 536 |
| HindII | GTYRAC | 2 cut(s) | 524, 536 |
| HinfI | GANTC | 3 cut(s) | 123, 227, 378 |
| HpaII | CCGG | 4 cut(s) | 484, 527, 553, 565 |
| HphI | GGTGA | 2 cut(s) | 54, 332 |
| Hpy166II | GTNNAC | 2 cut(s) | 524, 536 |
| Hpy188I | TCNGA | 1 cut(s) | 260 |
| Hpy188III | TCNNGA | 4 cut(s) | 62, 127, 151, 484 |
| Hpy8I | GTNNAC | 2 cut(s) | 524, 536 |
| HpyAV | CCTTC | 1 cut(s) | 490 |
| HpyCH4V | TGCA | 1 cut(s) | 215 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 352, 469, 549 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 305 |
| Hsp92II | CATG | 4 cut(s) | 74, 208, 241, 430 |
| HspAI | GCGC | 1 cut(s) | 424 |
| Kpn2I | TCCGGA | 1 cut(s) | 483 |
| Ksp22I | TGATCA | 1 cut(s) | 255 |
| Kzo9I | GATC | 3 cut(s) | 248, 255, 445 |
| LmnI | GCTCC | 2 cut(s) | 312, 469 |
| Lsp1109I | GCAGC | 2 cut(s) | 83, 536 |
| LweI | GCATC | 2 cut(s) | 120, 395 |
| MaeI | CTAG | 1 cut(s) | 100 |
| MalI | GATC | 3 cut(s) | 250, 257, 447 |
| MbiI | CCGCTC | 1 cut(s) | 472 |
| MboI | GATC | 3 cut(s) | 248, 255, 445 |
| MboII | GAAGA | 1 cut(s) | 12 |
| MflI | RGATCY | 1 cut(s) | 248 |
| MluCI | AATT | 4 cut(s) | 25, 105, 507, 514 |
| MlyI | GAGTC | 2 cut(s) | 117, 372 |
| MnlI | CCTC | 9 cut(s) | 33, 58, 147, 235, 261, 267, 300, 409, 590 |
| MroI | TCCGGA | 1 cut(s) | 483 |
| MslI | CAYNNNNRTG | 1 cut(s) | 242 |
| MspA1I | CMGCKG | 1 cut(s) | 285 |
| MspI | CCGG | 4 cut(s) | 484, 527, 553, 565 |
| MspR9I | CCNGG | 2 cut(s) | 545, 554 |
| MvaI | CCWGG | 1 cut(s) | 545 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 352, 469, 549 |
| NciI | CCSGG | 1 cut(s) | 554 |
| NcoI | CCATGG | 2 cut(s) | 70, 204 |
| NdeI | CATATG | 1 cut(s) | 222 |
| NdeII | GATC | 3 cut(s) | 248, 255, 445 |
| NheI | GCTAGC | 1 cut(s) | 99 |
| NlaIII | CATG | 4 cut(s) | 74, 208, 241, 430 |
| NlaIV | GGNNCC | 1 cut(s) | 137 |
| NmeAIII | GCCGAG | 1 cut(s) | 325 |
| NspI | RCATGY | 1 cut(s) | 430 |
| PfeI | GAWTC | 1 cut(s) | 227 |
| PkrI | GCNGC | 4 cut(s) | 98, 135, 284, 551 |
| PleI | GAGTC | 2 cut(s) | 117, 372 |
| PpsI | GAGTC | 2 cut(s) | 117, 372 |
| Psp6I | CCWGG | 1 cut(s) | 543 |
| PspFI | CCCAGC | 1 cut(s) | 369 |
| PspGI | CCWGG | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 1 cut(s) | 137 |
| PspPI | GGNCC | 3 cut(s) | 67, 541, 562 |
| PstNI | CAGNNNCTG | 2 cut(s) | 349, 391 |
| PsuI | RGATCY | 1 cut(s) | 248 |
| RseI | CAYNNNNRTG | 1 cut(s) | 242 |
| SatI | GCNGC | 4 cut(s) | 97, 134, 283, 550 |
| Sau3AI | GATC | 3 cut(s) | 248, 255, 445 |
| Sau96I | GGNCC | 3 cut(s) | 67, 541, 562 |
| SchI | GAGTC | 2 cut(s) | 117, 372 |
| ScrFI | CCNGG | 2 cut(s) | 545, 554 |
| SfaNI | GCATC | 2 cut(s) | 120, 395 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 242 |
| SmlI | CTYRAG | 1 cut(s) | 151 |
| SmoI | CTYRAG | 1 cut(s) | 151 |
| Sse9I | AATT | 4 cut(s) | 25, 105, 507, 514 |
| SsiI | CCGC | 7 cut(s) | 133, 139, 283, 394, 472, 496, 530 |
| SspMI | CTAG | 1 cut(s) | 100 |
| StyD4I | CCNGG | 2 cut(s) | 543, 552 |
| StyI | CCWWGG | 2 cut(s) | 70, 204 |
| TaqI | TCGA | 3 cut(s) | 121, 128, 403 |
| TasI | AATT | 4 cut(s) | 25, 105, 507, 514 |
| TauI | GCSGC | 2 cut(s) | 136, 285 |
| TfiI | GAWTC | 1 cut(s) | 227 |
| TscAI | CASTG | 1 cut(s) | 471 |
| TseI | GCWGC | 2 cut(s) | 96, 549 |
| TspRI | CASTG | 1 cut(s) | 471 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XceI | RCATGY | 1 cut(s) | 430 |
| XspI | CTAG | 1 cut(s) | 100 |