Rmu_sc0026250.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026250.1
OG0000123
Physical Location & Seq
Reverse (-)
2 .. 2128
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026250.1_g000001.1.cds

Sequence Viewer

Length: 918 bp
atgcgatccggaagcacatcaacaccaaattcagaggacagcggcgtcggccttgcacgtgacggcggccggagcttgttgactgacctagaacatctacacgccctggtagagcgacgggagcttgttcgcgccgtggatcttcgagtcgcaagtcagatacaggtaggtcgagtcggtgaggcaaaagaaggctgccggcaacgacttgccagtgtcgtagtgcttggggaagaggcccggcaagatccaaaatctccggaaaaattgatcgagcgttgggcagcaatggcggcggaagatgggacgaggactcttgccttatcggatgcggccgtagtgagcctggttgggggcggagatttgatccacgaccctttcttttacctctacagccttttgcttaccaagaaaccggtgatcattcagtcgttttcggaggcgatttccgggatatggctgttgaaggagagggttctgatccgtgaggaggagggggggatcttcgtgttccaattcaaggaacaggaggtgaaatatcgggttcttcatggtggcccttggtactacagtaacttgatgctattgttggctgcttacgacggggctagcgctctgtcgaagacccctctgcatttcttggaggtttgggtggctgtgaagggtctgagagttgccatgcgcaatgatccggctttaacccggattggcaacgttttaggaacttttgttagggctgaccaaattgcgttacggaggaaggatgtggtccagctaatccagctaatccatgacgttcgcctgcgagtctggactaggcgtgagttttgcttctcgtcggaatggacggtggtgcttgagttccagtatgaaaagtgtcatggcatatgtaaaggatgcggcttcttcactcatgcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

306

Amino Acids

34.3

Weight (kDa)

8.25

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
Acc16I TGCGCA 1 cut(s) 683
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 2 cut(s) 8, 259
AciI CCGC 7 cut(s) 42, 66, 293, 296, 332, 357, 900
AclI AACGTT 1 cut(s) 714
AclWI GGATC 6 cut(s) 147, 242, 361, 475, 509, 683
AcoI YGGCCR 2 cut(s) 67, 333
AcsI RAATTY 1 cut(s) 28
AcvI CACGTG 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 566
AfeI AGCGCT 1 cut(s) 613
AfiI CCNNNNNNNGG 4 cut(s) 352, 456, 490, 520
AgeI ACCGGT 1 cut(s) 415
AgsI TTSAA 2 cut(s) 466, 520
AjnI CCWGG 2 cut(s) 105, 345
AluBI AGCT 4 cut(s) 75, 124, 775, 784
AluI AGCT 4 cut(s) 75, 124, 775, 784
AlwI GGATC 6 cut(s) 147, 242, 361, 475, 509, 683
Aor13HI TCCGGA 2 cut(s) 8, 259
Aor51HI AGCGCT 1 cut(s) 613
AoxI GGCC 5 cut(s) 49, 67, 237, 333, 556
ApeKI GCWGC 3 cut(s) 195, 284, 593
ApoI RAATTY 1 cut(s) 28
AsiGI ACCGGT 1 cut(s) 415
AspLEI GCGC 3 cut(s) 134, 614, 684
AspS9I GGNCC 3 cut(s) 238, 557, 769
AsuC2I CCSGG 3 cut(s) 241, 451, 703
AsuHPI GGTGA 3 cut(s) 191, 430, 544
AsuNHI GCTAGC 1 cut(s) 608
AvaII GGWCC 1 cut(s) 769
BaeI ACNNNNGTAYC 2 cut(s) 556, 589
BbrPI CACGTG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 3 cut(s) 182, 296, 580
BccI CCATC 1 cut(s) 296
BceAI ACGGC 3 cut(s) 79, 119, 320
BciT130I CCWGG 2 cut(s) 107, 347
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 3 cut(s) 241, 451, 703
BfaI CTAG 3 cut(s) 89, 609, 816
BfmI CTRYAG 2 cut(s) 391, 568
BfoI RGCGCY 1 cut(s) 615
BisI GCNGC 8 cut(s) 43, 67, 196, 285, 294, 333, 594, 901
BlsI GCNGC 8 cut(s) 44, 68, 197, 286, 295, 334, 595, 902
Bme1390I CCNGG 5 cut(s) 107, 241, 347, 451, 703
Bme18I GGWCC 1 cut(s) 769
BmgT120I GGNCC 3 cut(s) 238, 557, 769
BmrFI CCNGG 5 cut(s) 107, 241, 347, 451, 703
BmsI GCATC 3 cut(s) 319, 570, 887
BmtI GCTAGC 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 3 cut(s) 241, 451, 703
BsaAI YACGTR 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 105, 135, 560
BsaWI WCCGGW 3 cut(s) 8, 259, 415
Bsc4I CCNNNNNNNGG 4 cut(s) 352, 456, 490, 520
Bse118I RCCGGY 2 cut(s) 198, 415
Bse1I ACTGG 2 cut(s) 213, 865
Bse3DI GCAATG 2 cut(s) 294, 691
BseAI TCCGGA 2 cut(s) 8, 259
BseBI CCWGG 2 cut(s) 107, 347
BseDI CCNNGG 3 cut(s) 105, 135, 560
BseGI GGATG 3 cut(s) 334, 769, 902
BseLI CCNNNNNNNGG 4 cut(s) 352, 456, 490, 520
BseMI GCAATG 2 cut(s) 294, 691
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 2 cut(s) 213, 865
BseRI GAGGAG 2 cut(s) 503, 506
BseX3I CGGCCG 2 cut(s) 67, 333
BseXI GCAGC 3 cut(s) 182, 296, 580
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 2 cut(s) 70, 336
BshFI GGCC 5 cut(s) 51, 69, 239, 335, 558
BshTI ACCGGT 1 cut(s) 415
BsiEI CGRYCG 2 cut(s) 70, 336
BsiSI CCGG 9 cut(s) 9, 70, 199, 241, 260, 416, 450, 692, 703
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 4 cut(s) 352, 456, 490, 520
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 5 cut(s) 51, 69, 239, 335, 558
Bsp13I TCCGGA 2 cut(s) 8, 259
Bsp143I GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
BspACI CCGC 7 cut(s) 42, 66, 293, 296, 332, 357, 900
BspANI GGCC 5 cut(s) 51, 69, 239, 335, 558
BspCNI CTCAG 1 cut(s) 660
BspEI TCCGGA 2 cut(s) 8, 259
BspFNI CGCG 1 cut(s) 132
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 6 cut(s) 147, 242, 361, 475, 509, 683
BsrDI GCAATG 2 cut(s) 294, 691
BsrFI RCCGGY 2 cut(s) 198, 415
BsrI ACTGG 2 cut(s) 213, 865
BssAI RCCGGY 2 cut(s) 198, 415
BssECI CCNNGG 3 cut(s) 105, 135, 560
BssMI GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 2 cut(s) 107, 347
Bst4CI ACNGT 2 cut(s) 572, 850
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 200, 610, 803
BstDEI CTNAG 1 cut(s) 668
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 3 cut(s) 334, 769, 902
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 615
BstHHI GCGC 3 cut(s) 134, 614, 684
BstKTI GATC 9 cut(s) 8, 142, 250, 273, 369, 423, 483, 504, 691
BstMBI GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
BstMCI CGRYCG 2 cut(s) 70, 336
BstMWI GCNNNNNNNGC 6 cut(s) 48, 72, 121, 290, 293, 781
BstNI CCWGG 2 cut(s) 107, 347
BstSCI CCNGG 5 cut(s) 105, 239, 345, 449, 701
BstSFI CTRYAG 2 cut(s) 391, 568
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 182, 296, 580
BstV2I GAAGAC 1 cut(s) 629
BstX2I RGATCY 3 cut(s) 139, 247, 501
BstYI RGATCY 3 cut(s) 139, 247, 501
BstZI CGGCCG 2 cut(s) 67, 333
BsuRI GGCC 5 cut(s) 51, 69, 239, 335, 558
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 3 cut(s) 334, 769, 902
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 200, 610, 803
CfoI GCGC 3 cut(s) 134, 614, 684
Cfr10I RCCGGY 2 cut(s) 198, 415
Cfr13I GGNCC 3 cut(s) 238, 557, 769
CseI GACGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 565
CspAI ACCGGT 1 cut(s) 415
CviAII CATG 5 cut(s) 551, 679, 791, 881, 914
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 1 cut(s) 668
DpnI GATC 9 cut(s) 7, 141, 249, 272, 368, 422, 482, 503, 690
DpnII GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 2 cut(s) 67, 333
EagI CGGCCG 2 cut(s) 67, 333
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EciI GGCGGA 2 cut(s) 311, 372
EclXI CGGCCG 2 cut(s) 67, 333
Eco130I CCWWGG 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 769
Eco47III AGCGCT 1 cut(s) 613
Eco52I CGGCCG 2 cut(s) 67, 333
Eco72I CACGTG 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 105, 345
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 5 cut(s) 554, 682, 794, 884, 917
FaiI YATR 9 cut(s) 457, 552, 680, 792, 870, 882, 887, 889, 915
FaqI GGGAC 1 cut(s) 319
FatI CATG 5 cut(s) 550, 678, 790, 880, 913
FauNDI CATATG 1 cut(s) 887
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 8 cut(s) 43, 67, 196, 285, 294, 333, 594, 901
FokI GGATG 3 cut(s) 341, 776, 909
Fsp4HI GCNGC 8 cut(s) 43, 67, 196, 285, 294, 333, 594, 901
FspBI CTAG 3 cut(s) 89, 609, 816
FspI TGCGCA 1 cut(s) 683
GlaI GCGC 3 cut(s) 133, 613, 683
GluI GCNGC 8 cut(s) 43, 67, 196, 285, 294, 333, 594, 901
HaeII RGCGCY 1 cut(s) 615
HaeIII GGCC 5 cut(s) 51, 69, 239, 335, 558
HapII CCGG 9 cut(s) 9, 70, 199, 241, 260, 416, 450, 692, 703
HgaI GACGC 1 cut(s) 34
HhaI GCGC 3 cut(s) 134, 614, 684
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 5 cut(s) 554, 682, 794, 884, 917
Hin6I GCGC 3 cut(s) 132, 612, 682
HinP1I GCGC 3 cut(s) 132, 612, 682
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 4 cut(s) 147, 174, 313, 807
HpaII CCGG 9 cut(s) 9, 70, 199, 241, 260, 416, 450, 692, 703
HphI GGTGA 3 cut(s) 191, 430, 544
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 7 cut(s) 34, 159, 328, 439, 480, 669, 841
Hpy188III TCNNGA 3 cut(s) 9, 260, 811
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 4 cut(s) 50, 120, 605, 841
HpyAV CCTTC 4 cut(s) 185, 460, 655, 754
HpyCH4III ACNGT 2 cut(s) 572, 850
HpyCH4IV ACGT 3 cut(s) 58, 714, 795
HpyCH4V TGCA 2 cut(s) 56, 634
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 72, 121, 290, 293, 781
HpyF3I CTNAG 1 cut(s) 668
HpySE526I ACGT 3 cut(s) 58, 714, 795
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 5 cut(s) 554, 682, 794, 884, 917
HspAI GCGC 3 cut(s) 132, 612, 682
Kpn2I TCCGGA 2 cut(s) 8, 259
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
LmnI GCTCC 2 cut(s) 72, 121
Lsp1109I GCAGC 3 cut(s) 182, 296, 580
LweI GCATC 3 cut(s) 319, 570, 887
MaeI CTAG 3 cut(s) 89, 609, 816
MaeII ACGT 3 cut(s) 58, 714, 795
MaeIII GTNAC 3 cut(s) 59, 572, 750
MalI GATC 9 cut(s) 7, 141, 249, 272, 368, 422, 482, 503, 690
MboI GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
MboII GAAGA 7 cut(s) 134, 245, 311, 496, 539, 634, 898
MflI RGATCY 3 cut(s) 139, 247, 501
MluCI AATT 4 cut(s) 28, 266, 515, 744
MlyI GAGTC 4 cut(s) 156, 183, 307, 816
MmeI TCCRAC 1 cut(s) 819
MroI TCCGGA 2 cut(s) 8, 259
MroNI GCCGGC 1 cut(s) 198
MseI TTAA 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 9 cut(s) 9, 70, 199, 241, 260, 416, 450, 692, 703
MspR9I CCNGG 5 cut(s) 107, 241, 347, 451, 703
MvaI CCWGG 2 cut(s) 107, 347
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 6 cut(s) 48, 72, 121, 290, 293, 781
NaeI GCCGGC 1 cut(s) 200
NciI CCSGG 3 cut(s) 241, 451, 703
NdeI CATATG 1 cut(s) 887
NdeII GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
NgoMIV GCCGGC 1 cut(s) 198
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 5 cut(s) 554, 682, 794, 884, 917
NmuCI GTSAC 1 cut(s) 59
NsbI TGCGCA 1 cut(s) 683
PdiI GCCGGC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 449
PinAI ACCGGT 1 cut(s) 415
PkrI GCNGC 8 cut(s) 44, 68, 197, 286, 295, 334, 595, 902
PleI GAGTC 4 cut(s) 155, 182, 307, 815
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 4 cut(s) 155, 182, 307, 815
Ppu21I YACGTR 1 cut(s) 59
Psp1406I AACGTT 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 105, 345
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 2 cut(s) 105, 345
PspPI GGNCC 3 cut(s) 238, 557, 769
PsuI RGATCY 3 cut(s) 139, 247, 501
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 8 cut(s) 43, 67, 196, 285, 294, 333, 594, 901
Sau3AI GATC 9 cut(s) 5, 139, 247, 270, 366, 420, 480, 501, 688
Sau96I GGNCC 3 cut(s) 238, 557, 769
SchI GAGTC 4 cut(s) 156, 183, 307, 816
ScrFI CCNGG 5 cut(s) 107, 241, 347, 451, 703
SfaNI GCATC 3 cut(s) 319, 570, 887
SfcI CTRYAG 2 cut(s) 391, 568
SinI GGWCC 1 cut(s) 769
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 4 cut(s) 28, 266, 515, 744
SsiI CCGC 7 cut(s) 42, 66, 293, 296, 332, 357, 900
SspMI CTAG 3 cut(s) 89, 609, 816
StyD4I CCNGG 5 cut(s) 105, 239, 345, 449, 701
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 572, 850
TaiI ACGT 3 cut(s) 61, 717, 798
TaqI TCGA 4 cut(s) 145, 172, 273, 620
TasI AATT 4 cut(s) 28, 266, 515, 744
TauI GCSGC 5 cut(s) 45, 69, 296, 335, 903
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 3 cut(s) 195, 284, 593
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 539, 885
TspGWI ACGGA 2 cut(s) 473, 769
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 769
XapI RAATTY 1 cut(s) 28
XspI CTAG 3 cut(s) 89, 609, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.