Rh3DG068500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000123
Physical Location & Seq
Forward (+)
4651205 .. 4652423
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG068500.1

Sequence Viewer

Length: 495 bp
ATGGAGTCGGGGGACGGGTCGGGCTACACTCCTCCAGCGTTGGCAACAACGTTGGTGGCTGTTGATGTGGCCGGAATTGAGTCGCCCGGCCGGTCTGAGGGGCTGCTGGACGGTGGGCTGGGTCCGGAGGGCTGGACGGAGGAAGCTAGGGCGACTGGGTCGGTGACGTCGGGATCTGTTGTGGAGCCAGCGGCTGCCCCGGGATTTTCGGCGGGAAACCTAGAGTTAGGATTTCCTGTTGGGCCGGGTGGCAGCGGGCCTGAAGGGGAAGTTGGGCTGACTTTGGGCCTGGGTGGTGAGTGTGATGACCTGATGAATGAGAGTGTGGGTGGGCCAGCTGCACAGGGGCCAGCTGCACATGGACCAGCTGTACATGGGCTAGTTGCAAATGGGCCAGGAATTGATGCTGTTTATCCAAAAATTTTGGGGACTCGCAAATGGTGCCATGACACGGTCGATTATCAAAACAAACTCCTTATTCATTATATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

16.23

Weight (kDa)

4.3

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 441
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 3 cut(s) 191, 212, 255
AclI AACGTT 1 cut(s) 50
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 2 cut(s) 69, 88
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 97, 451
AjnI CCWGG 2 cut(s) 288, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 4 cut(s) 146, 338, 353, 368
AluI AGCT 4 cut(s) 146, 338, 353, 368
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 8 cut(s) 69, 88, 242, 257, 286, 332, 347, 392
ApeKI GCWGC 5 cut(s) 103, 194, 252, 338, 353
ApoI RAATTY 1 cut(s) 420
AspS9I GGNCC 8 cut(s) 122, 242, 257, 286, 332, 347, 362, 392
AsuC2I CCSGG 4 cut(s) 87, 200, 201, 246
AsuHPI GGTGA 2 cut(s) 175, 308
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 2 cut(s) 122, 362
BanI GGYRCC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 90, 181, 264, 325, 340
BciT130I CCWGG 2 cut(s) 290, 396
BcnI CCSGG 4 cut(s) 87, 200, 201, 246
BfaI CTAG 3 cut(s) 147, 221, 380
BisI GCNGC 6 cut(s) 104, 192, 195, 253, 339, 354
BlsI GCNGC 6 cut(s) 105, 193, 196, 254, 340, 355
Bme1390I CCNGG 6 cut(s) 87, 200, 201, 246, 290, 396
Bme18I GGWCC 2 cut(s) 122, 362
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 8 cut(s) 122, 242, 257, 286, 332, 347, 362, 392
BmiI GGNNCC 4 cut(s) 123, 186, 348, 443
BmrFI CCNGG 6 cut(s) 87, 200, 201, 246, 290, 396
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 18
BpuMI CCSGG 4 cut(s) 87, 200, 201, 246
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 198, 199, 289
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 451
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 2 cut(s) 290, 396
BseDI CCNNGG 3 cut(s) 198, 199, 289
BseLI CCNNNNNNNGG 2 cut(s) 97, 451
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 21
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 5 cut(s) 90, 181, 264, 325, 340
BseYI CCCAGC 1 cut(s) 118
BsgI GTGCAG 2 cut(s) 324, 339
Bsh1285I CGRYCG 2 cut(s) 91, 456
BshFI GGCC 8 cut(s) 71, 90, 244, 259, 288, 334, 349, 394
BshNI GGYRCC 1 cut(s) 441
BsiEI CGRYCG 2 cut(s) 91, 456
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 6 cut(s) 72, 87, 91, 125, 200, 245
BslFI GGGAC 2 cut(s) 26, 442
BslI CCNNNNNNNGG 2 cut(s) 97, 451
BsmFI GGGAC 2 cut(s) 26, 442
BsnI GGCC 8 cut(s) 71, 90, 244, 259, 288, 334, 349, 394
BsoBI CYCGRG 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 173
BspACI CCGC 3 cut(s) 191, 212, 255
BspANI GGCC 8 cut(s) 71, 90, 244, 259, 288, 334, 349, 394
BspCNI CTCAG 1 cut(s) 88
BspEI TCCGGA 1 cut(s) 124
BspLI GGNNCC 4 cut(s) 123, 186, 348, 443
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 3 cut(s) 198, 199, 289
BssMI GATC 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 290, 396
Bst4CI ACNGT 2 cut(s) 113, 454
BstACI GRCGYC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 4 cut(s) 189, 257, 336, 351
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMCI CGRYCG 2 cut(s) 91, 456
BstMWI GCNNNNNNNGC 1 cut(s) 441
BstNI CCWGG 2 cut(s) 290, 396
BstSCI CCNGG 6 cut(s) 85, 198, 199, 244, 288, 394
BstV1I GCAGC 5 cut(s) 90, 181, 264, 325, 340
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 8 cut(s) 71, 90, 244, 259, 288, 334, 349, 394
Cac8I GCNNGC 4 cut(s) 189, 257, 336, 351
CaiI CAGNNNCTG 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 8 cut(s) 122, 242, 257, 286, 332, 347, 362, 392
Cfr9I CCCGGG 1 cut(s) 199
Csp6I GTAC 1 cut(s) 371
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 3 cut(s) 359, 374, 446
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EaeI YGGCCR 2 cut(s) 69, 88
EagI CGGCCG 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 122, 362
Eco52I CGGCCG 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 288, 394
FaeI CATG 3 cut(s) 362, 377, 449
FaiI YATR 5 cut(s) 360, 375, 447, 486, 488
FaqI GGGAC 2 cut(s) 26, 442
FatI CATG 3 cut(s) 358, 373, 445
FauI CCCGC 2 cut(s) 205, 248
Fnu4HI GCNGC 6 cut(s) 104, 192, 195, 253, 339, 354
Fsp4HI GCNGC 6 cut(s) 104, 192, 195, 253, 339, 354
FspBI CTAG 3 cut(s) 147, 221, 380
GluI GCNGC 6 cut(s) 104, 192, 195, 253, 339, 354
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 8 cut(s) 71, 90, 244, 259, 288, 334, 349, 394
HapII CCGG 6 cut(s) 72, 87, 91, 125, 200, 245
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 3 cut(s) 362, 377, 449
HinfI GANTC 3 cut(s) 5, 80, 430
HpaII CCGG 6 cut(s) 72, 87, 91, 125, 200, 245
HphI GGTGA 2 cut(s) 175, 308
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 125, 171
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 113, 454
HpyCH4IV ACGT 2 cut(s) 50, 167
HpyCH4V TGCA 3 cut(s) 341, 356, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 441
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 50, 167
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 362, 377, 449
Kpn2I TCCGGA 1 cut(s) 124
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 5 cut(s) 90, 181, 264, 325, 340
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 147, 221, 380
MaeII ACGT 2 cut(s) 50, 167
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MflI RGATCY 1 cut(s) 173
MluCI AATT 3 cut(s) 75, 399, 420
MlyI GAGTC 3 cut(s) 14, 89, 424
MnlI CCTC 4 cut(s) 42, 91, 121, 133
MroI TCCGGA 1 cut(s) 124
MseI TTAA 1 cut(s) 493
MspA1I CMGCKG 5 cut(s) 191, 255, 338, 353, 368
MspI CCGG 6 cut(s) 72, 87, 91, 125, 200, 245
MspR9I CCNGG 6 cut(s) 87, 200, 201, 246, 290, 396
MvaI CCWGG 2 cut(s) 290, 396
MwoI GCNNNNNNNGC 1 cut(s) 441
NciI CCSGG 4 cut(s) 87, 200, 201, 246
NdeII GATC 1 cut(s) 173
NlaIII CATG 3 cut(s) 362, 377, 449
NlaIV GGNNCC 4 cut(s) 123, 186, 348, 443
NmuCI GTSAC 1 cut(s) 163
PflFI GACNNNGTC 2 cut(s) 157, 452
PkrI GCNGC 6 cut(s) 105, 193, 196, 254, 340, 355
PleI GAGTC 3 cut(s) 13, 88, 424
PpsI GAGTC 3 cut(s) 13, 88, 424
Psp1406I AACGTT 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 288, 394
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 2 cut(s) 288, 394
PspN4I GGNNCC 4 cut(s) 123, 186, 348, 443
PspPI GGNCC 8 cut(s) 122, 242, 257, 286, 332, 347, 362, 392
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 173
PsyI GACNNNGTC 2 cut(s) 157, 452
PvuII CAGCTG 3 cut(s) 338, 353, 368
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 493
SatI GCNGC 6 cut(s) 104, 192, 195, 253, 339, 354
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 8 cut(s) 122, 242, 257, 286, 332, 347, 362, 392
SchI GAGTC 3 cut(s) 14, 89, 424
ScrFI CCNGG 6 cut(s) 87, 200, 201, 246, 290, 396
SetI ASST 8 cut(s) 53, 148, 170, 222, 312, 340, 355, 370
SfaNI GCATC 1 cut(s) 394
SinI GGWCC 2 cut(s) 122, 362
SmaI CCCGGG 1 cut(s) 201
Sse9I AATT 3 cut(s) 75, 399, 420
SsiI CCGC 3 cut(s) 191, 212, 255
SspMI CTAG 3 cut(s) 147, 221, 380
StyD4I CCNGG 6 cut(s) 85, 198, 199, 244, 288, 394
TaaI ACNGT 2 cut(s) 113, 454
TaiI ACGT 2 cut(s) 53, 170
TaqI TCGA 1 cut(s) 456
TasI AATT 3 cut(s) 75, 399, 420
TatI WGTACW 1 cut(s) 370
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 493
Tru9I TTAA 1 cut(s) 493
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 5 cut(s) 103, 194, 252, 338, 353
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 329, 470
TspGWI ACGGA 1 cut(s) 152
TspMI CCCGGG 1 cut(s) 199
Tth111I GACNNNGTC 2 cut(s) 157, 452
VpaK11BI GGWCC 2 cut(s) 122, 362
XapI RAATTY 1 cut(s) 420
XmaI CCCGGG 1 cut(s) 199
XspI CTAG 3 cut(s) 147, 221, 380
ZraI GACGTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.