Rmu_sc0003548.1_g000013

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003548.1
OG0000123
Physical Location & Seq
Reverse (-)
75697 .. 76122
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003548.1_g000013.1.cds

Sequence Viewer

Length: 426 bp
atgatggaggagaacacggtggctccttctgcactttctgaggaggccattatgagccttgttggaggagaggatgcaatccatgattcatttttctacctttgtggtcggcttttatccaagaagacagcggtgatcccatcgtcctcggcgacgatctccaacatttgggggttgaaggagagagttctgatccggcaagaggaggaagatatctttgtcttccaattcaaggatggagaggtgatgaatcagattctctccggtggtccatggttctacaacaactctatgttgctgctgacagactatgacagcgtttcagctctcggggcggcttcactgcatctcctggaggtttgggtggcagtgaaggggttgcgcattactatgcgcaacgagaaggccttaaccctaattggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

141

Amino Acids

15.6

Weight (kDa)

4.74

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 383, 395
AccB7I CCANNNNNTGG 1 cut(s) 168
AciI CCGC 2 cut(s) 131, 335
AclWI GGATC 2 cut(s) 130, 187
AfiI CCNNNNNNNGG 3 cut(s) 168, 202, 232
AgsI TTSAA 2 cut(s) 178, 232
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
AlwI GGATC 2 cut(s) 130, 187
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 2 cut(s) 45, 405
ApeKI GCWGC 1 cut(s) 298
AspLEI GCGC 2 cut(s) 384, 396
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 145, 256
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 131, 214
BbvI GCAGC 1 cut(s) 285
BccI CCATC 2 cut(s) 148, 230
BciT130I CCWGG 1 cut(s) 353
BisI GCNGC 2 cut(s) 299, 336
BlsI GCNGC 2 cut(s) 300, 337
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 64, 355
BpiI GAAGAC 2 cut(s) 131, 214
BpmI CTGGAG 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 147, 272
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 333, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 202, 232
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 147, 272
BseGI GGATG 2 cut(s) 79, 241
BseLI CCNNNNNNNGG 3 cut(s) 168, 202, 232
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 4 cut(s) 23, 56, 81, 218
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 2 cut(s) 47, 407
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 2 cut(s) 196, 264
BslI CCNNNNNNNGG 3 cut(s) 168, 202, 232
BsnI GGCC 2 cut(s) 47, 407
BsoBI CYCGRG 1 cut(s) 329
Bsp143I GATC 3 cut(s) 135, 156, 192
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 2 cut(s) 131, 335
BspANI GGCC 2 cut(s) 47, 407
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 130, 187
BssECI CCNNGG 2 cut(s) 147, 272
BssMI GATC 3 cut(s) 135, 156, 192
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 79, 241
BstHHI GCGC 2 cut(s) 384, 396
BstKTI GATC 3 cut(s) 138, 159, 195
BstMBI GATC 3 cut(s) 135, 156, 192
BstMWI GCNNNNNNNGC 2 cut(s) 29, 332
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 2 cut(s) 131, 214
BsuRI GGCC 2 cut(s) 47, 407
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 79, 241
BtsI GCAGTG 2 cut(s) 341, 375
BtsIMutI CAGTG 2 cut(s) 341, 375
CfoI GCGC 2 cut(s) 384, 396
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 2 cut(s) 83, 273
CviJI RGCY 7 cut(s) 23, 47, 57, 112, 326, 338, 407
CviKI_1 RGCY 7 cut(s) 23, 47, 57, 112, 326, 338, 407
DdeI CTNAG 1 cut(s) 39
DpnI GATC 3 cut(s) 137, 158, 194
DpnII GATC 3 cut(s) 135, 156, 192
Eco130I CCWWGG 1 cut(s) 272
Eco147I AGGCCT 1 cut(s) 407
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 2 cut(s) 86, 276
FaiI YATR 6 cut(s) 53, 84, 274, 293, 312, 392
FatI CATG 2 cut(s) 82, 272
Fnu4HI GCNGC 2 cut(s) 299, 336
FokI GGATG 2 cut(s) 86, 248
Fsp4HI GCNGC 2 cut(s) 299, 336
FspI TGCGCA 2 cut(s) 383, 395
GlaI GCGC 2 cut(s) 383, 395
GluI GCNGC 2 cut(s) 299, 336
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 47, 407
HapII CCGG 2 cut(s) 196, 264
HhaI GCGC 2 cut(s) 384, 396
Hin1II CATG 2 cut(s) 86, 276
Hin6I GCGC 2 cut(s) 382, 394
HinP1I GCGC 2 cut(s) 382, 394
HinfI GANTC 3 cut(s) 86, 250, 256
HpaII CCGG 2 cut(s) 196, 264
HphI GGTGA 2 cut(s) 145, 256
Hpy188I TCNGA 3 cut(s) 40, 192, 255
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 4 cut(s) 36, 172, 367, 397
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 32, 77, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 332
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 2 cut(s) 86, 276
HspAI GCGC 2 cut(s) 382, 394
Kzo9I GATC 3 cut(s) 135, 156, 192
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 209, 277, 338, 365
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 2 cut(s) 64, 355
MalI GATC 3 cut(s) 137, 158, 194
MboI GATC 3 cut(s) 135, 156, 192
MboII GAAGA 3 cut(s) 136, 214, 221
MluCI AATT 2 cut(s) 227, 417
MmeI TCCRAC 2 cut(s) 43, 186
MnlI CCTC 9 cut(s) 34, 37, 59, 64, 157, 196, 199, 235, 349
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 2 cut(s) 196, 264
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 29, 332
NcoI CCATGG 1 cut(s) 272
NdeII GATC 3 cut(s) 135, 156, 192
NlaIII CATG 2 cut(s) 86, 276
NlaIV GGNNCC 1 cut(s) 24
NmeAIII GCCGAG 1 cut(s) 128
NsbI TGCGCA 2 cut(s) 383, 395
PceI AGGCCT 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PfeI GAWTC 3 cut(s) 86, 250, 256
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 2 cut(s) 300, 337
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 2 cut(s) 299, 336
Sau3AI GATC 3 cut(s) 135, 156, 192
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 353
SetI ASST 4 cut(s) 102, 246, 328, 360
SfaNI GCATC 2 cut(s) 64, 355
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 2 cut(s) 227, 417
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 2 cut(s) 131, 335
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 19
TasI AATT 2 cut(s) 227, 417
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 86, 250, 256
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 2 cut(s) 348, 375
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 78, 263
TspRI CASTG 2 cut(s) 348, 375
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.