Rmu_sc0003507.1_g000033

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003507.1
OG0000123
Physical Location & Seq
Reverse (-)
185291 .. 189730
4440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003507.1_g000033.1.cds

Sequence Viewer

Length: 2427 bp
atgctgctcttggcagattatgacggaatccgggatctggtagatgtttctctgaactctatgactattttggtggcagtgaaagggttgcgcatggctatgcgcaatgagcgtgctctaacgttgcttgggaacgccttggggctgtttgttgtgcacgacgtacgccgccgcatatgggctcgtcgtacatactcgttctcggcagaagtggcgatggatttggaactgaggtatgaaaagtgccatggtatatgtagggcatgtgatttctttgtgcacgaagtgggtggttgtgacaacctattaatgacggtgatggcgccagaaggcacggatccagcgttggaagccgcgcaagtggtggcggacatggtcgaaattgggccgcctggctggtctgagatacggcctgcggttggtcggggatcgcagctgcggacggaggaggctcaagcaaatgggtcggtggctgtagacgggttggcgtctggactgcagggcatggcagatccggaatactcggcgggaaactctaatttgattttagatttccctgttggttcgggcgatagtaggcctagggagcaggggtcggcccagcagttgggctgtgtgctgagatggcagagggtaactggtgggcctgcagcacatgggtctgctgcaacttatacagttctagaggtgcgtaaatggagccatggagagtggagcaaggagaagcggctaaagcctagcttggctgtgatcccttgtgaatttcatcttggtgaacttgtggatgtccctgttagtattgagaagattccgaagaagaaaggttgccctaagggttgcaagaacaagaaggtttatgatggagaattggatagcagaaacaccaacctgaggcagaggttattagatgatgaggactctgatgcagccggcagtggcgaccacgccttcaacaccttctcgtcgacctcgatctcggcgccggctagcacatcccaagccccatcttcgtcgacctctgccaatcaccgaacaccattctggtgccgatcactgatctggtgccgaccatcctcaatcacagatcaccgatctgaggccggtcggagatgggctgcaggtgagagactggagaagaggacctggggaagactaaggcggagatgggaccggtcggagatgagctgcggtgatgggctgcaggtgagcgactggagatgggctgcgttggggctgggaccggtcggagaagggctgcaggggaagcccaacccgaaacaaagagaccccaacccgccgcagggaagcaccggcgaaaaaaacagtcggcctcacacgttgatgggtgcccagaccttcttttttttttttcgggaccggtcgccggattccggtcaccgttcgctgaattccggtcgccggtcaccggattccggtcgccggcgccctgccactggtcaccggaggccggcaagccgtaccaatgatcgagtttgcgacgcgatggcggaggagagcacgatggctccttctgcactttatgaggaggccattgtgagccttgttggaggagaagatgcaatccatgattcatttttctacctttgtggtcggtttttatccaagaagacaatggtgatcccgtcattctcggccgcgatctccaacgtttgggggttgaaggagagagttctgatccggcaggaggaggaggatatctttgtcttccaattcaaggatagagaggtgaagaatcggattctctccagcgatccatggttctacaacaactctatgttgctactagcagactatgacggcgtttcaactctcgaggtggcttcactgcatctcctggaggtttgggtggcggtgaaggggttgcgcattgctttgcgcaacgagaaggccttaaccctaattagacgagcgttgggttcctttgttaaggttgatcagggggcagtgcaacgaaaggatcctattcaaaggatccgtgtagtacaggatgtccggcagaggatttgggcgcgacggacctttcaattttctctgactgtctcggtgttggtggaactccaatatgaaaaatgtcatgggttgtgttcggcttgtggcttctttggtcatggagggggtatatgtgatggcagattggaagtggaggcgcgtgcagcactggttctagcggggtcggaccacgtggtggaagcaaacccagatgggttggcggcgtcagaagcggcagtttctgggttggttgttgggtcaaagatgccggcgacggtgggactggatgcgccggaggtttctagggtggcggaagtgactggaacgttggtgctaggatcgggttcaccagccgcggggcatgcagaactcgttccggaaaaatcggaaggaagccctaattttgaattaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

808

Amino Acids

88.37

Weight (kDa)

7.84

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1109, 1192
Acc16I TGCGCA 4 cut(s) 92, 104, 1886, 1898
Acc36I ACCTGC 2 cut(s) 1109, 1192
AccB1I GGYRCC 6 cut(s) 322, 979, 1044, 1062, 1346, 1443
AccB7I CCANNNNNTGG 3 cut(s) 607, 1671, 2206
AccI GTMKAC 3 cut(s) 477, 965, 1013
AccII CGCG 6 cut(s) 356, 1502, 1658, 2032, 2170, 2366
AccIII TCCGGA 2 cut(s) 514, 2386
AclI AACGTT 3 cut(s) 122, 1668, 2336
AcoI YGGCCR 1 cut(s) 1653
AcsI RAATTY 2 cut(s) 761, 1408
AcvI CACGTG 1 cut(s) 2203
AcyI GRCGYC 5 cut(s) 323, 488, 980, 1444, 2234
AdeI CACNNNGTG 2 cut(s) 286, 2206
AfaI GTAC 4 cut(s) 165, 190, 1480, 2004
AflIII ACRYGT 1 cut(s) 1335
AgeI ACCGGT 3 cut(s) 1170, 1240, 1377
AgsI TTSAA 7 cut(s) 952, 1681, 1735, 1827, 1988, 2045, 2417
AjnI CCWGG 3 cut(s) 391, 1142, 1854
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AluBI AGCT 3 cut(s) 436, 741, 1185
AluI AGCT 3 cut(s) 436, 741, 1185
Alw21I GWGCWC 4 cut(s) 118, 159, 282, 1520
Alw26I GTCTC 3 cut(s) 1120, 1278, 2065
Alw44I GTGCAC 2 cut(s) 155, 278
AlwNI CAGNNNCTG 1 cut(s) 2252
Ama87I CYCGRG 1 cut(s) 1832
Aor13HI TCCGGA 2 cut(s) 514, 2386
ApaLI GTGCAC 2 cut(s) 155, 278
ApoI RAATTY 2 cut(s) 761, 1408
AseI ATTAAT 1 cut(s) 308
AsiGI ACCGGT 3 cut(s) 1170, 1240, 1377
Asp700I GAANNNNTTC 1 cut(s) 2382
AspA2I CCTAGG 1 cut(s) 581
AspS9I GGNCC 9 cut(s) 386, 598, 644, 1140, 1168, 1238, 1375, 2037, 2197
AsuC2I CCSGG 1 cut(s) 32
AsuNHI GCTAGC 1 cut(s) 986
AvaI CYCGRG 1 cut(s) 1832
AvaII GGWCC 6 cut(s) 1140, 1168, 1238, 1375, 2037, 2197
AvrII CCTAGG 1 cut(s) 581
AxyI CCTNAGG 2 cut(s) 831, 890
BaeGI GKGCMC 3 cut(s) 159, 282, 1351
BamHI GGATCC 3 cut(s) 337, 1978, 1992
BanI GGYRCC 6 cut(s) 322, 979, 1044, 1062, 1346, 1443
BanII GRGCYC 1 cut(s) 184
BbrPI CACGTG 1 cut(s) 2203
BbsI GAAGAC 3 cut(s) 1156, 1634, 1717
Bbv12I GWGCWC 4 cut(s) 118, 159, 282, 1520
BceAI ACGGC 3 cut(s) 425, 1461, 1834
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BciT130I CCWGG 3 cut(s) 393, 1144, 1856
BclI TGATCA 1 cut(s) 1954
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 3 cut(s) 1120, 1278, 2065
BfaI CTAG 8 cut(s) 582, 683, 738, 987, 1805, 2186, 2313, 2345
BfmI CTRYAG 6 cut(s) 474, 497, 648, 1116, 1199, 1256
BfoI RGCGCY 3 cut(s) 326, 983, 1447
BfuAI ACCTGC 2 cut(s) 1109, 1192
BlnI CCTAGG 1 cut(s) 581
Bme1390I CCNGG 4 cut(s) 32, 393, 1144, 1856
Bme18I GGWCC 6 cut(s) 1140, 1168, 1238, 1375, 2037, 2197
BmeT110I CYCGRG 1 cut(s) 1832
BmgT120I GGNCC 9 cut(s) 386, 598, 644, 1140, 1168, 1238, 1375, 2037, 2197
BmrFI CCNGG 4 cut(s) 32, 393, 1144, 1856
BmsI GCATC 5 cut(s) 913, 1567, 1858, 2265, 2287
BmtI GCTAGC 1 cut(s) 990
BpiI GAAGAC 3 cut(s) 1156, 1634, 1717
BpmI CTGGAG 4 cut(s) 1151, 1234, 1750, 1877
BpuEI CTTGAG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 2203
BsaHI GRCGYC 5 cut(s) 323, 488, 980, 1444, 2234
BsaI GGTCTC 1 cut(s) 1278
BsaJI CCNNGG 7 cut(s) 138, 247, 581, 703, 1143, 1775, 2364
BsaXI ACNNNNNCTCC 6 cut(s) 578, 608, 1510, 1540, 1836, 1866
Bse1I ACTGG 7 cut(s) 643, 1134, 1217, 1459, 2184, 2298, 2335
Bse21I CCTNAGG 2 cut(s) 831, 890
Bse3DI GCAATG 2 cut(s) 112, 1887
BseAI TCCGGA 2 cut(s) 514, 2386
BseBI CCWGG 3 cut(s) 393, 1144, 1856
BseDI CCNNGG 7 cut(s) 138, 247, 581, 703, 1143, 1775, 2364
BseGI GGATG 5 cut(s) 790, 992, 1070, 2014, 2302
BseMI GCAATG 2 cut(s) 112, 1887
BseMII CTCAG 5 cut(s) 221, 393, 611, 881, 1086
BseNI ACTGG 7 cut(s) 643, 1134, 1217, 1459, 2184, 2298, 2335
BseRI GAGGAG 6 cut(s) 461, 1526, 1559, 1584, 1721, 1724
BseSI GKGCMC 3 cut(s) 159, 282, 1351
BseX3I CGGCCG 1 cut(s) 1653
BseYI CCCAGC 2 cut(s) 600, 1234
BsgI GTGCAG 2 cut(s) 1518, 2193
Bsh1236I CGCG 6 cut(s) 356, 1502, 1658, 2032, 2170, 2366
Bsh1285I CGRYCG 7 cut(s) 1105, 1175, 1245, 1382, 1417, 1438, 1656
BshNI GGYRCC 6 cut(s) 322, 979, 1044, 1062, 1346, 1443
BshTI ACCGGT 3 cut(s) 1170, 1240, 1377
BsiEI CGRYCG 7 cut(s) 1105, 1175, 1245, 1382, 1417, 1438, 1656
BsiHKAI GWGCWC 4 cut(s) 118, 159, 282, 1520
BsiHKCI CYCGRG 1 cut(s) 1832
BsiWI CGTACG 1 cut(s) 163
BslFI GGGAC 5 cut(s) 773, 1181, 1251, 1388, 2304
BsmAI GTCTC 3 cut(s) 1120, 1278, 2065
BsmFI GGGAC 5 cut(s) 773, 1181, 1251, 1388, 2304
Bso31I GGTCTC 1 cut(s) 1278
BsoBI CYCGRG 1 cut(s) 1832
Bsp1286I GDGCHC 6 cut(s) 118, 159, 184, 282, 1351, 1520
Bsp13I TCCGGA 2 cut(s) 514, 2386
Bsp19I CCATGG 3 cut(s) 247, 703, 1775
BspCNI CTCAG 5 cut(s) 222, 394, 612, 882, 1087
BspEI TCCGGA 2 cut(s) 514, 2386
BspFNI CGCG 6 cut(s) 356, 1502, 1658, 2032, 2170, 2366
BspMAI CTGCAG 5 cut(s) 501, 652, 1120, 1203, 1260
BspMI ACCTGC 2 cut(s) 1109, 1192
BspOI GCTAGC 1 cut(s) 990
BspT107I GGYRCC 6 cut(s) 322, 979, 1044, 1062, 1346, 1443
BspTNI GGTCTC 1 cut(s) 1278
BsrDI GCAATG 2 cut(s) 112, 1887
BsrI ACTGG 7 cut(s) 643, 1134, 1217, 1459, 2184, 2298, 2335
BssECI CCNNGG 7 cut(s) 138, 247, 581, 703, 1143, 1775, 2364
BssNI GRCGYC 5 cut(s) 323, 488, 980, 1444, 2234
BssT1I CCWWGG 5 cut(s) 138, 247, 581, 703, 1775
Bst2UI CCWGG 3 cut(s) 393, 1144, 1856
Bst4CI ACNGT 6 cut(s) 316, 679, 1325, 1400, 2059, 2287
Bst6I CTCTTC 1 cut(s) 1130
BstACI GRCGYC 5 cut(s) 323, 488, 980, 1444, 2234
BstBAI YACGTR 1 cut(s) 2203
BstDEI CTNAG 7 cut(s) 230, 402, 620, 831, 890, 1095, 1154
BstDSI CCRYGG 4 cut(s) 247, 703, 1775, 2364
BstEII GGTNACC 3 cut(s) 1394, 1422, 1457
BstF5I GGATG 5 cut(s) 790, 992, 1070, 2014, 2302
BstFNI CGCG 6 cut(s) 356, 1502, 1658, 2032, 2170, 2366
BstH2I RGCGCY 3 cut(s) 326, 983, 1447
BstMAI GTCTC 3 cut(s) 1120, 1278, 2065
BstMCI CGRYCG 7 cut(s) 1105, 1175, 1245, 1382, 1417, 1438, 1656
BstNI CCWGG 3 cut(s) 393, 1144, 1856
BstNSI RCATGY 2 cut(s) 267, 2375
BstPI GGTNACC 3 cut(s) 1394, 1422, 1457
BstSCI CCNGG 4 cut(s) 30, 391, 1142, 1854
BstSFI CTRYAG 6 cut(s) 474, 497, 648, 1116, 1199, 1256
BstSLI GKGCMC 3 cut(s) 159, 282, 1351
BstUI CGCG 6 cut(s) 356, 1502, 1658, 2032, 2170, 2366
BstV2I GAAGAC 3 cut(s) 1156, 1634, 1717
BstX2I RGATCY 5 cut(s) 34, 337, 511, 1978, 1992
BstYI RGATCY 5 cut(s) 34, 337, 511, 1978, 1992
BstZI CGGCCG 1 cut(s) 1653
Bsu36I CCTNAGG 2 cut(s) 831, 890
BtgI CCRYGG 4 cut(s) 247, 703, 1775, 2364
BtgZI GCGATG 2 cut(s) 230, 1517
BtsCI GGATG 5 cut(s) 790, 992, 1070, 2014, 2302
BtsI GCAGTG 4 cut(s) 84, 940, 1844, 1971
BtsIMutI CAGTG 7 cut(s) 84, 940, 1052, 1452, 1844, 1971, 2177
BveI ACCTGC 2 cut(s) 1109, 1192
CaiI CAGNNNCTG 1 cut(s) 2252
Cfr13I GGNCC 9 cut(s) 386, 598, 644, 1140, 1168, 1238, 1375, 2037, 2197
Cfr42I CCGCGG 1 cut(s) 2367
CseI GACGC 3 cut(s) 477, 1508, 2223
Csp6I GTAC 4 cut(s) 164, 189, 1479, 2003
CspAI ACCGGT 3 cut(s) 1170, 1240, 1377
CviQI GTAC 4 cut(s) 164, 189, 1479, 2003
DdeI CTNAG 7 cut(s) 230, 402, 620, 831, 890, 1095, 1154
DinI GGCGCC 3 cut(s) 324, 981, 1445
DraIII CACNNNGTG 2 cut(s) 286, 2206
EaeI YGGCCR 1 cut(s) 1653
EagI CGGCCG 1 cut(s) 1653
Eam1104I CTCTTC 1 cut(s) 1130
EarI CTCTTC 1 cut(s) 1130
EciI GGCGGA 4 cut(s) 383, 1174, 1523, 2336
EclXI CGGCCG 1 cut(s) 1653
Eco130I CCWWGG 5 cut(s) 138, 247, 581, 703, 1775
Eco147I AGGCCT 2 cut(s) 580, 1910
Eco24I GRGCYC 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 1278
Eco32I GATATC 1 cut(s) 1717
Eco47I GGWCC 6 cut(s) 1140, 1168, 1238, 1375, 2037, 2197
Eco52I CGGCCG 1 cut(s) 1653
Eco72I CACGTG 1 cut(s) 2203
Eco81I CCTNAGG 2 cut(s) 831, 890
Eco88I CYCGRG 1 cut(s) 1832
Eco91I GGTNACC 3 cut(s) 1394, 1422, 1457
EcoO109I RGGNCCY 1 cut(s) 1140
EcoO65I GGTNACC 3 cut(s) 1394, 1422, 1457
EcoRI GAATTC 1 cut(s) 1408
EcoRII CCWGG 3 cut(s) 391, 1142, 1854
EcoRV GATATC 1 cut(s) 1717
EcoT14I CCWWGG 5 cut(s) 138, 247, 581, 703, 1775
EcoT38I GRGCYC 1 cut(s) 184
EgeI GGCGCC 3 cut(s) 324, 981, 1445
EheI GGCGCC 3 cut(s) 324, 981, 1445
ErhI CCWWGG 5 cut(s) 138, 247, 581, 703, 1775
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 5 cut(s) 773, 1181, 1251, 1388, 2304
FauI CCCGC 4 cut(s) 520, 1302, 2182, 2359
FauNDI CATATG 1 cut(s) 176
FbaI TGATCA 1 cut(s) 1954
FblI GTMKAC 3 cut(s) 477, 965, 1013
FokI GGATG 5 cut(s) 797, 979, 1057, 2021, 2309
FriOI GRGCYC 1 cut(s) 184
FspBI CTAG 8 cut(s) 582, 683, 738, 987, 1805, 2186, 2313, 2345
FspI TGCGCA 4 cut(s) 92, 104, 1886, 1898
GsaI CCCAGC 2 cut(s) 604, 1238
GsuI CTGGAG 4 cut(s) 1151, 1234, 1750, 1877
HaeII RGCGCY 3 cut(s) 326, 983, 1447
HgaI GACGC 3 cut(s) 477, 1508, 2223
Hin1I GRCGYC 5 cut(s) 323, 488, 980, 1444, 2234
HincII GTYRAC 2 cut(s) 966, 1014
HindII GTYRAC 2 cut(s) 966, 1014
HinfI GANTC 8 cut(s) 27, 808, 917, 1388, 1430, 1589, 1753, 1759
Hpy166II GTNNAC 7 cut(s) 157, 280, 478, 776, 966, 1014, 2357
Hpy188III TCNNGA 6 cut(s) 492, 515, 683, 1373, 1832, 2387
Hpy8I GTNNAC 7 cut(s) 157, 280, 478, 776, 966, 1014, 2357
Hpy99I CGWCG 7 cut(s) 164, 189, 967, 1015, 1502, 2037, 2287
HpyCH4III ACNGT 6 cut(s) 316, 679, 1325, 1400, 2059, 2287
HpyCH4IV ACGT 6 cut(s) 122, 162, 1337, 1668, 2202, 2336
HpyF3I CTNAG 7 cut(s) 230, 402, 620, 831, 890, 1095, 1154
HpySE526I ACGT 6 cut(s) 122, 162, 1337, 1668, 2202, 2336
Hsp92I GRCGYC 5 cut(s) 323, 488, 980, 1444, 2234
KasI GGCGCC 3 cut(s) 322, 979, 1443
Kpn2I TCCGGA 2 cut(s) 514, 2386
KroI GCCGGC 5 cut(s) 929, 982, 1440, 1468, 2278
KroNI GCCGGC 5 cut(s) 931, 984, 1442, 1470, 2280
Ksp22I TGATCA 1 cut(s) 1954
KspI CCGCGG 1 cut(s) 2367
LmnI GCTCC 4 cut(s) 586, 699, 714, 1531
LweI GCATC 5 cut(s) 913, 1567, 1858, 2265, 2287
MaeI CTAG 8 cut(s) 582, 683, 738, 987, 1805, 2186, 2313, 2345
MaeII ACGT 6 cut(s) 122, 162, 1337, 1668, 2202, 2336
MaeIII GTNAC 6 cut(s) 296, 634, 1394, 1422, 1457, 2326
MflI RGATCY 5 cut(s) 34, 337, 511, 1978, 1992
MhlI GDGCHC 6 cut(s) 118, 159, 184, 282, 1351, 1520
Mly113I GGCGCC 3 cut(s) 323, 980, 1444
MlyI GAGTC 1 cut(s) 911
MmeI TCCRAC 7 cut(s) 327, 1085, 1155, 1225, 1546, 1689, 2175
MreI CGCCGGCG 1 cut(s) 1440
MroI TCCGGA 2 cut(s) 514, 2386
MroNI GCCGGC 5 cut(s) 929, 982, 1440, 1468, 2278
MroXI GAANNNNTTC 1 cut(s) 2382
MseI TTAA 3 cut(s) 308, 1913, 1947
MslI CAYNNNNRTG 4 cut(s) 98, 771, 1042, 1340
MspA1I CMGCKG 2 cut(s) 436, 2366
MspR9I CCNGG 4 cut(s) 32, 393, 1144, 1856
MvaI CCWGG 3 cut(s) 393, 1144, 1856
MvnI CGCG 6 cut(s) 356, 1502, 1658, 2032, 2170, 2366
NaeI GCCGGC 5 cut(s) 931, 984, 1442, 1470, 2280
NarI GGCGCC 3 cut(s) 323, 980, 1444
NciI CCSGG 1 cut(s) 32
NcoI CCATGG 3 cut(s) 247, 703, 1775
NdeI CATATG 1 cut(s) 176
NgoMIV GCCGGC 5 cut(s) 929, 982, 1440, 1468, 2278
NheI GCTAGC 1 cut(s) 986
NmeAIII GCCGAG 4 cut(s) 182, 503, 956, 1631
NmuCI GTSAC 5 cut(s) 296, 1394, 1422, 1457, 2326
NsbI TGCGCA 4 cut(s) 92, 104, 1886, 1898
NspI RCATGY 2 cut(s) 267, 2375
PaeI GCATGC 1 cut(s) 2375
PaeR7I CTCGAG 1 cut(s) 1832
PaqCI CACCTGC 2 cut(s) 1109, 1192
PceI AGGCCT 2 cut(s) 580, 1910
PcsI WCGNNNNNNNCGW 2 cut(s) 341, 968
PdiI GCCGGC 5 cut(s) 931, 984, 1442, 1470, 2280
PdmI GAANNNNTTC 1 cut(s) 2382
PfeI GAWTC 7 cut(s) 27, 808, 1388, 1430, 1589, 1753, 1759
Pfl23II CGTACG 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 3 cut(s) 607, 1671, 2206
PfoI TCCNGGA 2 cut(s) 30, 1854
PinAI ACCGGT 3 cut(s) 1170, 1240, 1377
PleI GAGTC 1 cut(s) 911
PluTI GGCGCC 3 cut(s) 326, 983, 1447
PmaCI CACGTG 1 cut(s) 2203
PmlI CACGTG 1 cut(s) 2203
PpsI GAGTC 1 cut(s) 911
Ppu21I YACGTR 1 cut(s) 2203
PpuMI RGGWCCY 1 cut(s) 1140
PshBI ATTAAT 1 cut(s) 308
Psp1406I AACGTT 3 cut(s) 122, 1668, 2336
Psp5II RGGWCCY 1 cut(s) 1140
Psp6I CCWGG 3 cut(s) 391, 1142, 1854
PspCI CACGTG 1 cut(s) 2203
PspEI GGTNACC 3 cut(s) 1394, 1422, 1457
PspFI CCCAGC 2 cut(s) 600, 1234
PspGI CCWGG 3 cut(s) 391, 1142, 1854
PspLI CGTACG 1 cut(s) 163
PspPI GGNCC 9 cut(s) 386, 598, 644, 1140, 1168, 1238, 1375, 2037, 2197
PspPPI RGGWCCY 1 cut(s) 1140
PstI CTGCAG 5 cut(s) 501, 652, 1120, 1203, 1260
PstNI CAGNNNCTG 1 cut(s) 2252
PsuI RGATCY 5 cut(s) 34, 337, 511, 1978, 1992
PsyI GACNNNGTC 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 436
RsaI GTAC 4 cut(s) 165, 190, 1480, 2004
RsaNI GTAC 4 cut(s) 164, 189, 1479, 2003
RseI CAYNNNNRTG 4 cut(s) 98, 771, 1042, 1340
SacII CCGCGG 1 cut(s) 2367
SalI GTCGAC 2 cut(s) 964, 1012
SaqAI TTAA 3 cut(s) 308, 1913, 1947
Sau96I GGNCC 9 cut(s) 386, 598, 644, 1140, 1168, 1238, 1375, 2037, 2197
SchI GAGTC 1 cut(s) 911
ScrFI CCNGG 4 cut(s) 32, 393, 1144, 1856
SduI GDGCHC 6 cut(s) 118, 159, 184, 282, 1351, 1520
SfaNI GCATC 5 cut(s) 913, 1567, 1858, 2265, 2287
SfcI CTRYAG 6 cut(s) 474, 497, 648, 1116, 1199, 1256
SfoI GGCGCC 3 cut(s) 324, 981, 1445
Sfr274I CTCGAG 1 cut(s) 1832
Sfr303I CCGCGG 1 cut(s) 2367
SgrAI CRCCGGYG 2 cut(s) 1310, 1440
SgrBI CCGCGG 1 cut(s) 2367
SinI GGWCC 6 cut(s) 1140, 1168, 1238, 1375, 2037, 2197
SlaI CTCGAG 1 cut(s) 1832
SmiMI CAYNNNNRTG 4 cut(s) 98, 771, 1042, 1340
SmlI CTYRAG 2 cut(s) 453, 1832
SmoI CTYRAG 2 cut(s) 453, 1832
SphI GCATGC 1 cut(s) 2375
SseBI AGGCCT 2 cut(s) 580, 1910
SspDI GGCGCC 3 cut(s) 322, 979, 1443
SspMI CTAG 8 cut(s) 582, 683, 738, 987, 1805, 2186, 2313, 2345
StuI AGGCCT 2 cut(s) 580, 1910
StyD4I CCNGG 4 cut(s) 30, 391, 1142, 1854
StyI CCWWGG 5 cut(s) 138, 247, 581, 703, 1775
TaaI ACNGT 6 cut(s) 316, 679, 1325, 1400, 2059, 2287
TaiI ACGT 6 cut(s) 125, 165, 1340, 1671, 2205, 2339
TaqI TCGA 6 cut(s) 378, 965, 971, 1013, 1489, 1833
TatI WGTACW 1 cut(s) 2002
TfiI GAWTC 7 cut(s) 27, 808, 1388, 1430, 1589, 1753, 1759
Tru1I TTAA 3 cut(s) 308, 1913, 1947
Tru9I TTAA 3 cut(s) 308, 1913, 1947
TscAI CASTG 7 cut(s) 84, 940, 1059, 1459, 1851, 1971, 2184
TseFI GTSAC 5 cut(s) 296, 1394, 1422, 1457, 2326
Tsp45I GTSAC 5 cut(s) 296, 1394, 1422, 1457, 2326
TspDTI ATGAA 4 cut(s) 252, 755, 1581, 2100
TspGWI ACGGA 5 cut(s) 39, 350, 458, 1985, 2050
TspRI CASTG 7 cut(s) 84, 940, 1059, 1459, 1851, 1971, 2184
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 3 cut(s) 607, 1671, 2206
VneI GTGCAC 2 cut(s) 155, 278
VpaK11BI GGWCC 6 cut(s) 1140, 1168, 1238, 1375, 2037, 2197
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 2 cut(s) 761, 1408
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 2 cut(s) 267, 2375
XcmI CCANNNNNNNNNTGG 1 cut(s) 1630
XhoI CTCGAG 1 cut(s) 1832
XmaJI CCTAGG 1 cut(s) 581
XmiI GTMKAC 3 cut(s) 477, 965, 1013
XmnI GAANNNNTTC 1 cut(s) 2382
XspI CTAG 8 cut(s) 582, 683, 738, 987, 1805, 2186, 2313, 2345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.