Rmu_sc0002575.1_g000023

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002575.1
OG0000123
Physical Location & Seq
Forward (+)
103819 .. 105109
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002575.1_g000023.1.cds

Sequence Viewer

Length: 1077 bp
atggcggcagaggaggctatcgtgcacctagttgggggcgaggatgcaatccaagatccttttttctatgtatgtggcatgttgctctcccaaaaacgagtgttgcttccgtcgttttctgcggctatttcctgtatctggggtttgaaagagcggattttgatccgtgaggaggaaggacggatctttgtctttcaattcaaggagcaggagacgaaggatcacatcctcaaaggcggcccttggttttttaacaattccatgcttctcttggcggactatgactgtctccgggatctgacagaggttccgctgaattcaatggaggtttgggtggcggtgaaaggtctgcgcgtggctatgcgcaatgcccgtgccctaaccttacttgggaactccttggggcgctttgtcaggtacgaccaaggtgcgttgcagaggaaggatcctgtgcaaaggctccgggttatgcacgacgtacgttgccgtgtatgggctcgacgtaagtactcgttttcggagatgggtcgagctacactcctccagcgttggcaacaacgttggtggccggaattgagtcgcctggctagcctgaggggctgctggacgttgggctggacggaggaagctagggcgactgggtcgggtggcagcgggcctgaaggggtggttgggctgactttgggcctgggtggtgagtgtgatggcctgatgaatgagagtgtgggtgggccagctgcacagggaccagctgtacatgggctagttgcaaatgggccagggactgatgctgtttatcccaaaattttggggactcgcaaatggtgccatggtgagtggcatatggagaagcggcaaaaaccaaccttggcggagataccccatgagtttcatcttggtgaacttgtggaggtcccggtgactgttgggaagactccaaagaagaagggtcgacctaggggtagtcagaataaagaaaacaagaggagcaacctgatgccgaggttgttggatgctgcagagcctgatgcaggtgctagctccgacccccaggggacggagaaggtacatgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

358

Amino Acids

39.9

Weight (kDa)

9.03

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1022
Acc16I TGCGCA 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 1022
AccB1I GGYRCC 1 cut(s) 825
AccBSI CCGCTC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 952
AccII CGCG 1 cut(s) 354
AclI AACGTT 1 cut(s) 559
AclWI GGATC 7 cut(s) 50, 157, 191, 228, 303, 440, 453
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 2 cut(s) 316, 804
AcuI CTGAAG 1 cut(s) 681
AfaI GTAC 5 cut(s) 419, 480, 509, 756, 1068
AfiI CCNNNNNNNGG 7 cut(s) 34, 138, 172, 390, 493, 1031, 1057
AflIII ACRYGT 1 cut(s) 1069
AgsI TTSAA 4 cut(s) 148, 197, 202, 321
AjnI CCWGG 4 cut(s) 582, 687, 778, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 533, 629, 737, 752, 1041
AluI AGCT 5 cut(s) 533, 629, 737, 752, 1041
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 206, 293
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 7 cut(s) 50, 157, 191, 228, 303, 440, 453
AlwNI CAGNNNCTG 2 cut(s) 785, 1025
AoxI GGCC 7 cut(s) 238, 566, 656, 685, 706, 731, 776
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 4 cut(s) 600, 651, 737, 1016
ApoI RAATTY 2 cut(s) 316, 804
AspA2I CCTAGG 1 cut(s) 956
AspLEI GCGC 3 cut(s) 354, 366, 408
AspS9I GGNCC 7 cut(s) 239, 656, 685, 731, 746, 776, 913
AsuC2I CCSGG 3 cut(s) 293, 464, 917
AsuHPI GGTGA 5 cut(s) 352, 707, 845, 911, 931
AsuNHI GCTAGC 2 cut(s) 587, 1037
AvaII GGWCC 2 cut(s) 746, 913
AvrII CCTAGG 1 cut(s) 956
AxyI CCTNAGG 1 cut(s) 593
BaeGI GKGCMC 2 cut(s) 27, 379
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 825
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 938
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 587, 663, 724, 1003
BccI CCATC 2 cut(s) 517, 698
BceAI ACGGC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 4 cut(s) 584, 689, 780, 1052
BcnI CCSGG 3 cut(s) 293, 464, 917
BcoDI GTCTC 2 cut(s) 206, 293
BfaI CTAG 7 cut(s) 29, 588, 630, 764, 957, 1038, 1075
BfmI CTRYAG 1 cut(s) 1017
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 1022
BglI GCCNNNNNGGC 1 cut(s) 597
BisI GCNGC 8 cut(s) 6, 123, 238, 601, 652, 738, 854, 1017
BlnI CCTAGG 1 cut(s) 956
BlsI GCNGC 8 cut(s) 7, 124, 239, 602, 653, 739, 855, 1018
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 7 cut(s) 293, 464, 584, 689, 780, 917, 1052
Bme18I GGWCC 2 cut(s) 746, 913
BmgT120I GGNCC 7 cut(s) 239, 656, 685, 731, 746, 776, 913
BmiI GGNNCC 6 cut(s) 309, 447, 461, 747, 827, 915
BmrFI CCNGG 7 cut(s) 293, 464, 584, 689, 780, 917, 1052
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 5 cut(s) 34, 778, 987, 1003, 1018
BmtI GCTAGC 2 cut(s) 591, 1041
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 938
BplI GAGNNNNNCTC 2 cut(s) 522, 554
BpmI CTGGAG 1 cut(s) 527
BpuMI CCSGG 3 cut(s) 293, 464, 917
BsaBI GATNNNNATC 1 cut(s) 161
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 138, 172, 390, 493, 1031, 1057
Bse1I ACTGG 1 cut(s) 643
Bse21I CCTNAGG 1 cut(s) 593
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 4 cut(s) 584, 689, 780, 1052
BseGI GGATG 3 cut(s) 49, 225, 1018
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 7 cut(s) 34, 138, 172, 390, 493, 1031, 1057
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 584
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 4 cut(s) 26, 185, 530, 1000
BseSI GKGCMC 2 cut(s) 27, 379
BseXI GCAGC 4 cut(s) 587, 663, 724, 1003
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 7 cut(s) 240, 568, 658, 687, 708, 733, 778
BshNI GGYRCC 1 cut(s) 825
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 4 cut(s) 292, 463, 569, 917
BsiWI CGTACG 1 cut(s) 478
BslFI GGGAC 5 cut(s) 759, 796, 826, 899, 1069
BslI CCNNNNNNNGG 7 cut(s) 34, 138, 172, 390, 493, 1031, 1057
BsmAI GTCTC 2 cut(s) 206, 293
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 5 cut(s) 759, 796, 826, 899, 1069
BsnI GGCC 7 cut(s) 240, 568, 658, 687, 708, 733, 778
Bsp1286I GDGCHC 3 cut(s) 27, 379, 499
Bsp1407I TGTACA 1 cut(s) 754
Bsp143I GATC 6 cut(s) 55, 162, 183, 220, 295, 445
Bsp19I CCATGG 1 cut(s) 829
BspANI GGCC 7 cut(s) 240, 568, 658, 687, 708, 733, 778
BspCNI CTCAG 1 cut(s) 585
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 6 cut(s) 309, 447, 461, 747, 827, 915
BspMAI CTGCAG 1 cut(s) 1021
BspMI ACCTGC 1 cut(s) 1022
BspOI GCTAGC 2 cut(s) 591, 1041
BspPI GGATC 7 cut(s) 50, 157, 191, 228, 303, 440, 453
BspT107I GGYRCC 1 cut(s) 825
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 373
BsrGI TGTACA 1 cut(s) 754
BsrI ACTGG 1 cut(s) 643
BssMI GATC 6 cut(s) 55, 162, 183, 220, 295, 445
BssT1I CCWWGG 6 cut(s) 242, 399, 424, 829, 867, 956
Bst2UI CCWGG 4 cut(s) 584, 689, 780, 1052
Bst4CI ACNGT 2 cut(s) 287, 925
BstAPI GCANNNNNTGC 1 cut(s) 825
BstAUI TGTACA 1 cut(s) 754
BstC8I GCNNGC 4 cut(s) 589, 656, 735, 1039
BstDEI CTNAG 1 cut(s) 593
BstDSI CCRYGG 1 cut(s) 829
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 3 cut(s) 49, 225, 1018
BstFNI CGCG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 3 cut(s) 354, 366, 408
BstKTI GATC 6 cut(s) 58, 165, 186, 223, 298, 448
BstMAI GTCTC 2 cut(s) 206, 293
BstMBI GATC 6 cut(s) 55, 162, 183, 220, 295, 445
BstMWI GCNNNNNNNGC 4 cut(s) 14, 588, 597, 825
BstNI CCWGG 4 cut(s) 584, 689, 780, 1052
BstNSI RCATGY 2 cut(s) 82, 1073
BstSCI CCNGG 7 cut(s) 291, 462, 582, 687, 778, 915, 1050
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 2 cut(s) 27, 379
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 4 cut(s) 587, 663, 724, 1003
BstV2I GAAGAC 1 cut(s) 938
BstX2I RGATCY 4 cut(s) 55, 183, 295, 445
BstXI CCANNNNNNTGG 1 cut(s) 808
BstYI RGATCY 4 cut(s) 55, 183, 295, 445
Bsu36I CCTNAGG 1 cut(s) 593
BsuRI GGCC 7 cut(s) 240, 568, 658, 687, 708, 733, 778
BtgI CCRYGG 1 cut(s) 829
BtsCI GGATG 3 cut(s) 49, 225, 1018
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 4 cut(s) 589, 656, 735, 1039
CaiI CAGNNNCTG 2 cut(s) 785, 1025
CfoI GCGC 3 cut(s) 354, 366, 408
Cfr13I GGNCC 7 cut(s) 239, 656, 685, 731, 746, 776, 913
Csp6I GTAC 5 cut(s) 418, 479, 508, 755, 1067
CspCI CAANNNNNGTGG 2 cut(s) 545, 580
CviAII CATG 6 cut(s) 79, 262, 758, 830, 884, 1070
CviQI GTAC 5 cut(s) 418, 479, 508, 755, 1067
DdeI CTNAG 1 cut(s) 593
DpnI GATC 6 cut(s) 57, 164, 185, 222, 297, 447
DpnII GATC 6 cut(s) 55, 162, 183, 220, 295, 445
EaeI YGGCCR 1 cut(s) 566
EciI GGCGGA 2 cut(s) 290, 887
Eco130I CCWWGG 6 cut(s) 242, 399, 424, 829, 867, 956
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 746, 913
Eco57I CTGAAG 1 cut(s) 681
Eco81I CCTNAGG 1 cut(s) 593
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 913
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 4 cut(s) 582, 687, 778, 1050
EcoT14I CCWWGG 6 cut(s) 242, 399, 424, 829, 867, 956
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 6 cut(s) 242, 399, 424, 829, 867, 956
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 6 cut(s) 82, 265, 761, 833, 887, 1073
FaqI GGGAC 5 cut(s) 759, 796, 826, 899, 1069
FatI CATG 6 cut(s) 78, 261, 757, 829, 883, 1069
FauI CCCGC 1 cut(s) 647
FauNDI CATATG 1 cut(s) 843
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 8 cut(s) 6, 123, 238, 601, 652, 738, 854, 1017
FokI GGATG 3 cut(s) 56, 212, 1025
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 8 cut(s) 6, 123, 238, 601, 652, 738, 854, 1017
FspBI CTAG 7 cut(s) 29, 588, 630, 764, 957, 1038, 1075
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 3 cut(s) 353, 365, 407
GluI GCNGC 8 cut(s) 6, 123, 238, 601, 652, 738, 854, 1017
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 7 cut(s) 240, 568, 658, 687, 708, 733, 778
HapII CCGG 4 cut(s) 292, 463, 569, 917
HhaI GCGC 3 cut(s) 354, 366, 408
Hin1II CATG 6 cut(s) 82, 265, 761, 833, 887, 1073
Hin6I GCGC 3 cut(s) 352, 364, 406
HinP1I GCGC 3 cut(s) 352, 364, 406
HincII GTYRAC 1 cut(s) 953
HindII GTYRAC 1 cut(s) 953
HinfI GANTC 3 cut(s) 577, 814, 934
HpaII CCGG 4 cut(s) 292, 463, 569, 917
HphI GGTGA 5 cut(s) 352, 707, 845, 911, 931
Hpy166II GTNNAC 3 cut(s) 25, 902, 953
Hpy188I TCNGA 4 cut(s) 300, 520, 969, 1045
Hpy8I GTNNAC 3 cut(s) 25, 902, 953
Hpy99I CGWCG 3 cut(s) 115, 479, 504
HpyAV CCTTC 6 cut(s) 170, 211, 436, 656, 940, 1057
HpyCH4III ACNGT 2 cut(s) 287, 925
HpyCH4IV ACGT 5 cut(s) 477, 481, 502, 559, 608
HpyCH4V TGCA 9 cut(s) 25, 47, 436, 454, 472, 740, 770, 1019, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 588, 597, 825
HpyF3I CTNAG 1 cut(s) 593
HpySE526I ACGT 5 cut(s) 477, 481, 502, 559, 608
Hsp92II CATG 6 cut(s) 82, 265, 761, 833, 887, 1073
HspAI GCGC 3 cut(s) 352, 364, 406
Kzo9I GATC 6 cut(s) 55, 162, 183, 220, 295, 445
LmnI GCTCC 4 cut(s) 205, 465, 987, 1046
Lsp1109I GCAGC 4 cut(s) 587, 663, 724, 1003
LweI GCATC 5 cut(s) 34, 778, 987, 1003, 1018
MaeI CTAG 7 cut(s) 29, 588, 630, 764, 957, 1038, 1075
MaeII ACGT 5 cut(s) 477, 481, 502, 559, 608
MaeIII GTNAC 1 cut(s) 919
MalI GATC 6 cut(s) 57, 164, 185, 222, 297, 447
MbiI CCGCTC 1 cut(s) 154
MboI GATC 6 cut(s) 55, 162, 183, 220, 295, 445
MboII GAAGA 2 cut(s) 943, 955
MflI RGATCY 4 cut(s) 55, 183, 295, 445
MhlI GDGCHC 3 cut(s) 27, 379, 499
MluCI AATT 5 cut(s) 197, 256, 316, 572, 804
MlyI GAGTC 3 cut(s) 586, 808, 928
MmeI TCCRAC 2 cut(s) 990, 1068
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 4 cut(s) 313, 654, 737, 752
MspI CCGG 4 cut(s) 292, 463, 569, 917
MspR9I CCNGG 7 cut(s) 293, 464, 584, 689, 780, 917, 1052
MvaI CCWGG 4 cut(s) 584, 689, 780, 1052
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 14, 588, 597, 825
NciI CCSGG 3 cut(s) 293, 464, 917
NcoI CCATGG 1 cut(s) 829
NdeI CATATG 1 cut(s) 843
NdeII GATC 6 cut(s) 55, 162, 183, 220, 295, 445
NheI GCTAGC 2 cut(s) 587, 1037
NlaIII CATG 6 cut(s) 82, 265, 761, 833, 887, 1073
NlaIV GGNNCC 6 cut(s) 309, 447, 461, 747, 827, 915
NmeAIII GCCGAG 1 cut(s) 1026
NmuCI GTSAC 1 cut(s) 919
NsbI TGCGCA 1 cut(s) 365
NspI RCATGY 2 cut(s) 82, 1073
PaqCI CACCTGC 1 cut(s) 1022
PasI CCCWGGG 1 cut(s) 1051
PciI ACATGT 1 cut(s) 1069
Pfl23II CGTACG 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 8 cut(s) 7, 124, 239, 602, 653, 739, 855, 1018
PleI GAGTC 3 cut(s) 585, 808, 928
PpsI GAGTC 3 cut(s) 585, 808, 928
PpuMI RGGWCCY 1 cut(s) 913
PscI ACATGT 1 cut(s) 1069
Psp1406I AACGTT 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 913
Psp6I CCWGG 4 cut(s) 582, 687, 778, 1050
PspGI CCWGG 4 cut(s) 582, 687, 778, 1050
PspLI CGTACG 1 cut(s) 478
PspN4I GGNNCC 6 cut(s) 309, 447, 461, 747, 827, 915
PspPI GGNCC 7 cut(s) 239, 656, 685, 731, 746, 776, 913
PspPPI RGGWCCY 1 cut(s) 913
PstI CTGCAG 1 cut(s) 1021
PstNI CAGNNNCTG 2 cut(s) 785, 1025
PsuI RGATCY 4 cut(s) 55, 183, 295, 445
PsyI GACNNNGTC 1 cut(s) 640
PvuII CAGCTG 2 cut(s) 737, 752
RsaI GTAC 5 cut(s) 419, 480, 509, 756, 1068
RsaNI GTAC 5 cut(s) 418, 479, 508, 755, 1067
RseI CAYNNNNRTG 1 cut(s) 897
SalI GTCGAC 1 cut(s) 951
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 8 cut(s) 6, 123, 238, 601, 652, 738, 854, 1017
Sau3AI GATC 6 cut(s) 55, 162, 183, 220, 295, 445
Sau96I GGNCC 7 cut(s) 239, 656, 685, 731, 746, 776, 913
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 3 cut(s) 586, 808, 928
ScrFI CCNGG 7 cut(s) 293, 464, 584, 689, 780, 917, 1052
SduI GDGCHC 3 cut(s) 27, 379, 499
SfaNI GCATC 5 cut(s) 34, 778, 987, 1003, 1018
SfcI CTRYAG 1 cut(s) 1017
SinI GGWCC 2 cut(s) 746, 913
SmiMI CAYNNNNRTG 1 cut(s) 897
Sse9I AATT 5 cut(s) 197, 256, 316, 572, 804
SspMI CTAG 7 cut(s) 29, 588, 630, 764, 957, 1038, 1075
StyD4I CCNGG 7 cut(s) 291, 462, 582, 687, 778, 915, 1050
StyI CCWWGG 6 cut(s) 242, 399, 424, 829, 867, 956
TaaI ACNGT 2 cut(s) 287, 925
TaiI ACGT 5 cut(s) 480, 484, 505, 562, 611
TaqI TCGA 3 cut(s) 499, 529, 952
TasI AATT 5 cut(s) 197, 256, 316, 572, 804
TatI WGTACW 2 cut(s) 507, 754
TauI GCSGC 4 cut(s) 8, 125, 240, 856
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseFI GTSAC 1 cut(s) 919
TseI GCWGC 4 cut(s) 600, 651, 737, 1016
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 2 cut(s) 728, 881
TspGWI ACGGA 5 cut(s) 99, 155, 196, 635, 1073
Tth111I GACNNNGTC 1 cut(s) 640
VneI GTGCAC 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 746, 913
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 2 cut(s) 316, 804
XceI RCATGY 2 cut(s) 82, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 956
XmiI GTMKAC 1 cut(s) 952
XspI CTAG 7 cut(s) 29, 588, 630, 764, 957, 1038, 1075
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.