Rmu_sc0005083.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005083.1
OG0000123
Physical Location & Seq
Reverse (-)
25008 .. 28686
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005083.1_g000005.1.cds

Sequence Viewer

Length: 1614 bp
atgctgctcttggcagattatgacggaatccgggatctggtagatgtttctctgaactctatgactattttggtggcagtgaaagggttgcgcatggctatgcgcaatgagcgtgctctaacgttgcttgggaacgccttggggctgtttgttgtgcacgacgtacgccgccgcatatgggctcgtcgtacatactcgttctcggcagaagtggcggtggatttggaactgaggtatgaaaagtgtcatggtatatgtagggcatgtggtttctttgtgcacgaagtgggtggttgtgacaacctattaatgacggtgatggcgcctgaaggcacggatccagcgttggaggccgtgctaatggtggcggacatggtcgaaattgggccgcctggctggtctgagatacggcctgcggttggtcggggatcgcagctgcggacggaggagactcaagtaaatgggtcggtggctgtagacgggttggcgtctggactgcagggcatggcagatccggaatactcggcgggaaactctaatttgattttagatttccctgttggctcgggcgatagtgggcctagggagcagggaaacaccaacctgaggcagaggttattagatgatgaggactctgatgcaggtactaaatccgaccataagccggcagtggcgaccacgccttcaacaccttcttcgtcgacctcgatctcggcgccgactagcacatcccaagccccatcttcgtcgacctctgccaatcaccgaacaccgttttggtgccgaccatcctcaatcacggatcaccgatctgaggccggtcggagatgggctgcaggtgagagactggagaagaggacctggggaagacgaaggcggagatgggaccggtcggagatgagctgcggtgatgggctgcaggtgagcgactggagatgggctgcgttggggctgggaccggtcagagaagggctacagggaccggtcgcaggatttcggtcaccgttctctggattcctgtcgccggtcgtcggcgccctgccactggtcaccggaggccggcaagggtttctttgccctagccgtaccattgatcgagtttgcgacgcgatggcggaggagagcacgatggctccttctacactttctgaggaggccattgtgagccttgttggaggagaagatgcaatccatgattcatttttctacctttgtggtcggtttttatccaagaagacaatggtgctcccgtcattctcggcggcgatctccaacgtttgggggttgaaggagagagttctgatccggcaggaggagggggatatctttgtcttccaattcaaggatagagaggtgaagaatcggattctctccagcgatccatggttctacaacaactctatgttgctgctggcagactatgacggcgtttcaactctcgaggcggcttcactgcatctcctggaggtttgggtggcggtgaaggggttgcgcattgctttgcgcaacgagaaggcattaaccctaattagacgagcattgggctcctttgttaaggttgatcagggggcagtgcaacgaaaggatcctattcaaaggatccgtgtagtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

537

Amino Acids

58.76

Weight (kDa)

6.49

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 827, 910
Acc16I TGCGCA 4 cut(s) 92, 104, 1493, 1505
Acc36I ACCTGC 3 cut(s) 632, 827, 910
AccB1I GGYRCC 4 cut(s) 322, 715, 780, 1034
AccB7I CCANNNNNTGG 1 cut(s) 1278
AccI GTMKAC 3 cut(s) 477, 701, 749
AccII CGCG 1 cut(s) 1109
AccIII TCCGGA 1 cut(s) 514
AclI AACGTT 2 cut(s) 122, 1275
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 4 cut(s) 323, 488, 716, 1035
AdeI CACNNNGTG 1 cut(s) 286
AfaI GTAC 4 cut(s) 165, 190, 646, 1087
AgeI ACCGGT 3 cut(s) 888, 958, 982
AgsI TTSAA 5 cut(s) 687, 1288, 1342, 1434, 1595
AjnI CCWGG 3 cut(s) 391, 860, 1461
AjuI GAANNNNNNNTTGG 2 cut(s) 760, 792
AluBI AGCT 2 cut(s) 436, 903
AluI AGCT 2 cut(s) 436, 903
Alw21I GWGCWC 5 cut(s) 118, 159, 282, 1127, 1248
Alw26I GTCTC 2 cut(s) 443, 838
Alw44I GTGCAC 2 cut(s) 155, 278
Ama87I CYCGRG 2 cut(s) 565, 1439
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 7 cut(s) 351, 386, 410, 578, 816, 1057, 1155
ApaLI GTGCAC 2 cut(s) 155, 278
ApeKI GCWGC 8 cut(s) 4, 433, 436, 833, 903, 916, 941, 1408
AseI ATTAAT 1 cut(s) 308
AsiGI ACCGGT 3 cut(s) 888, 958, 982
AspA2I CCTAGG 1 cut(s) 581
AspLEI GCGC 7 cut(s) 93, 105, 325, 718, 1037, 1494, 1506
AspS9I GGNCC 6 cut(s) 386, 578, 858, 886, 956, 980
AsuC2I CCSGG 1 cut(s) 32
AvaI CYCGRG 2 cut(s) 565, 1439
AvaII GGWCC 4 cut(s) 858, 886, 956, 980
AvrII CCTAGG 1 cut(s) 581
AxyI CCTNAGG 1 cut(s) 605
BaeGI GKGCMC 2 cut(s) 159, 282
BamHI GGATCC 3 cut(s) 337, 1585, 1599
BanI GGYRCC 4 cut(s) 322, 715, 780, 1034
BanII GRGCYC 2 cut(s) 184, 1547
BbsI GAAGAC 3 cut(s) 874, 1241, 1324
Bbv12I GWGCWC 5 cut(s) 118, 159, 282, 1127, 1248
BbvI GCAGC 7 cut(s) 423, 445, 820, 890, 903, 928, 1395
BccI CCATC 9 cut(s) 313, 748, 796, 822, 876, 905, 930, 1105, 1123
BceAI ACGGC 4 cut(s) 338, 425, 1068, 1441
BciT130I CCWGG 3 cut(s) 393, 862, 1463
BclI TGATCA 1 cut(s) 1561
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 443, 838
BfaI CTAG 3 cut(s) 582, 723, 1080
BfmI CTRYAG 5 cut(s) 474, 497, 834, 917, 974
BfoI RGCGCY 3 cut(s) 326, 719, 1038
BfuAI ACCTGC 3 cut(s) 632, 827, 910
BlnI CCTAGG 1 cut(s) 581
Bme1390I CCNGG 4 cut(s) 32, 393, 862, 1463
Bme18I GGWCC 4 cut(s) 858, 886, 956, 980
BmeT110I CYCGRG 2 cut(s) 565, 1439
BmgT120I GGNCC 6 cut(s) 386, 578, 858, 886, 956, 980
BmrFI CCNGG 4 cut(s) 32, 393, 862, 1463
BmsI GCATC 3 cut(s) 628, 1174, 1465
BpiI GAAGAC 3 cut(s) 874, 1241, 1324
BpmI CTGGAG 4 cut(s) 869, 952, 1357, 1484
BpuEI CTTGAG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 32
BsaHI GRCGYC 4 cut(s) 323, 488, 716, 1035
BsaJI CCNNGG 4 cut(s) 138, 581, 861, 1382
BsaWI WCCGGW 5 cut(s) 514, 888, 958, 982, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 1117, 1147, 1443, 1473
Bse118I RCCGGY 7 cut(s) 664, 818, 888, 958, 982, 1024, 1059
Bse1I ACTGG 3 cut(s) 852, 935, 1050
Bse21I CCTNAGG 1 cut(s) 605
Bse3DI GCAATG 2 cut(s) 112, 1494
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 3 cut(s) 393, 862, 1463
BseDI CCNNGG 4 cut(s) 138, 581, 861, 1382
BseGI GGATG 2 cut(s) 728, 788
BseMI GCAATG 2 cut(s) 112, 1494
BseMII CTCAG 5 cut(s) 221, 393, 596, 804, 1140
BseNI ACTGG 3 cut(s) 852, 935, 1050
BseRI GAGGAG 5 cut(s) 461, 1133, 1166, 1191, 1328
BseSI GKGCMC 2 cut(s) 159, 282
BseXI GCAGC 7 cut(s) 423, 445, 820, 890, 903, 928, 1395
BseYI CCCAGC 1 cut(s) 952
Bsh1236I CGCG 1 cut(s) 1109
Bsh1285I CGRYCG 4 cut(s) 823, 893, 987, 1029
BshFI GGCC 7 cut(s) 353, 388, 412, 580, 818, 1059, 1157
BshNI GGYRCC 4 cut(s) 322, 715, 780, 1034
BshTI ACCGGT 3 cut(s) 888, 958, 982
BsiEI CGRYCG 4 cut(s) 823, 893, 987, 1029
BsiHKAI GWGCWC 5 cut(s) 118, 159, 282, 1127, 1248
BsiHKCI CYCGRG 2 cut(s) 565, 1439
BsiWI CGTACG 1 cut(s) 163
BslFI GGGAC 3 cut(s) 899, 969, 993
BsmAI GTCTC 2 cut(s) 443, 838
BsmFI GGGAC 3 cut(s) 899, 969, 993
BsnI GGCC 7 cut(s) 353, 388, 412, 580, 818, 1059, 1157
BsoBI CYCGRG 2 cut(s) 565, 1439
Bsp1286I GDGCHC 7 cut(s) 118, 159, 184, 282, 1127, 1248, 1547
Bsp13I TCCGGA 1 cut(s) 514
Bsp19I CCATGG 1 cut(s) 1382
BspANI GGCC 7 cut(s) 353, 388, 412, 580, 818, 1059, 1157
BspCNI CTCAG 5 cut(s) 222, 394, 597, 805, 1141
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 1109
BspMAI CTGCAG 3 cut(s) 501, 838, 921
BspMI ACCTGC 3 cut(s) 632, 827, 910
BspT107I GGYRCC 4 cut(s) 322, 715, 780, 1034
BsrDI GCAATG 2 cut(s) 112, 1494
BsrFI RCCGGY 7 cut(s) 664, 818, 888, 958, 982, 1024, 1059
BsrI ACTGG 3 cut(s) 852, 935, 1050
BssAI RCCGGY 7 cut(s) 664, 818, 888, 958, 982, 1024, 1059
BssECI CCNNGG 4 cut(s) 138, 581, 861, 1382
BssNI GRCGYC 4 cut(s) 323, 488, 716, 1035
BssT1I CCWWGG 3 cut(s) 138, 581, 1382
Bst2UI CCWGG 3 cut(s) 393, 862, 1463
Bst4CI ACNGT 3 cut(s) 316, 774, 1005
Bst6I CTCTTC 1 cut(s) 848
BstACI GRCGYC 4 cut(s) 323, 488, 716, 1035
BstC8I GCNNGC 5 cut(s) 114, 414, 666, 1061, 1413
BstDEI CTNAG 5 cut(s) 230, 402, 605, 813, 1149
BstDSI CCRYGG 1 cut(s) 1382
BstEII GGTNACC 2 cut(s) 999, 1048
BstF5I GGATG 2 cut(s) 728, 788
BstFNI CGCG 1 cut(s) 1109
BstH2I RGCGCY 3 cut(s) 326, 719, 1038
BstHHI GCGC 7 cut(s) 93, 105, 325, 718, 1037, 1494, 1506
BstMAI GTCTC 2 cut(s) 443, 838
BstMCI CGRYCG 4 cut(s) 823, 893, 987, 1029
BstMWI GCNNNNNNNGC 4 cut(s) 109, 212, 350, 586
BstNI CCWGG 3 cut(s) 393, 862, 1463
BstNSI RCATGY 1 cut(s) 267
BstPI GGTNACC 2 cut(s) 999, 1048
BstSCI CCNGG 4 cut(s) 30, 391, 860, 1461
BstSFI CTRYAG 5 cut(s) 474, 497, 834, 917, 974
BstSLI GKGCMC 2 cut(s) 159, 282
BstUI CGCG 1 cut(s) 1109
BstV1I GCAGC 7 cut(s) 423, 445, 820, 890, 903, 928, 1395
BstV2I GAAGAC 3 cut(s) 874, 1241, 1324
BstX2I RGATCY 5 cut(s) 34, 337, 511, 1585, 1599
BstYI RGATCY 5 cut(s) 34, 337, 511, 1585, 1599
Bsu36I CCTNAGG 1 cut(s) 605
BsuRI GGCC 7 cut(s) 353, 388, 412, 580, 818, 1059, 1157
BtgI CCRYGG 1 cut(s) 1382
BtgZI GCGATG 1 cut(s) 1124
BtsCI GGATG 2 cut(s) 728, 788
BtsI GCAGTG 4 cut(s) 84, 675, 1451, 1578
BtsIMutI CAGTG 5 cut(s) 84, 675, 1043, 1451, 1578
BveI ACCTGC 3 cut(s) 632, 827, 910
Cac8I GCNNGC 5 cut(s) 114, 414, 666, 1061, 1413
CfoI GCGC 7 cut(s) 93, 105, 325, 718, 1037, 1494, 1506
Cfr10I RCCGGY 7 cut(s) 664, 818, 888, 958, 982, 1024, 1059
Cfr13I GGNCC 6 cut(s) 386, 578, 858, 886, 956, 980
CseI GACGC 2 cut(s) 477, 1115
Csp6I GTAC 4 cut(s) 164, 189, 645, 1086
CspAI ACCGGT 3 cut(s) 888, 958, 982
CviAII CATG 7 cut(s) 94, 248, 264, 373, 505, 1193, 1383
CviQI GTAC 4 cut(s) 164, 189, 645, 1086
DdeI CTNAG 5 cut(s) 230, 402, 605, 813, 1149
DinI GGCGCC 3 cut(s) 324, 717, 1036
DraIII CACNNNGTG 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
EciI GGCGGA 3 cut(s) 383, 892, 1130
Eco130I CCWWGG 3 cut(s) 138, 581, 1382
Eco24I GRGCYC 2 cut(s) 184, 1547
Eco32I GATATC 1 cut(s) 1324
Eco47I GGWCC 4 cut(s) 858, 886, 956, 980
Eco57I CTGAAG 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 605
Eco88I CYCGRG 2 cut(s) 565, 1439
Eco91I GGTNACC 2 cut(s) 999, 1048
EcoO109I RGGNCCY 1 cut(s) 858
EcoO65I GGTNACC 2 cut(s) 999, 1048
EcoRII CCWGG 3 cut(s) 391, 860, 1461
EcoRV GATATC 1 cut(s) 1324
EcoT14I CCWWGG 3 cut(s) 138, 581, 1382
EcoT38I GRGCYC 2 cut(s) 184, 1547
EgeI GGCGCC 3 cut(s) 324, 717, 1036
EheI GGCGCC 3 cut(s) 324, 717, 1036
ErhI CCWWGG 3 cut(s) 138, 581, 1382
FaeI CATG 7 cut(s) 97, 251, 267, 376, 508, 1196, 1386
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 3 cut(s) 899, 969, 993
FatI CATG 7 cut(s) 93, 247, 263, 372, 504, 1192, 1382
FauI CCCGC 1 cut(s) 520
FauNDI CATATG 1 cut(s) 176
FbaI TGATCA 1 cut(s) 1561
FblI GTMKAC 3 cut(s) 477, 701, 749
FokI GGATG 2 cut(s) 715, 775
FriOI GRGCYC 2 cut(s) 184, 1547
FspBI CTAG 3 cut(s) 582, 723, 1080
FspI TGCGCA 4 cut(s) 92, 104, 1493, 1505
GlaI GCGC 7 cut(s) 92, 104, 324, 717, 1036, 1493, 1505
GsaI CCCAGC 1 cut(s) 956
GsuI CTGGAG 4 cut(s) 869, 952, 1357, 1484
HaeII RGCGCY 3 cut(s) 326, 719, 1038
HaeIII GGCC 7 cut(s) 353, 388, 412, 580, 818, 1059, 1157
HgaI GACGC 2 cut(s) 477, 1115
HhaI GCGC 7 cut(s) 93, 105, 325, 718, 1037, 1494, 1506
Hin1I GRCGYC 4 cut(s) 323, 488, 716, 1035
Hin1II CATG 7 cut(s) 97, 251, 267, 376, 508, 1196, 1386
Hin6I GCGC 7 cut(s) 91, 103, 323, 716, 1035, 1492, 1504
HinP1I GCGC 7 cut(s) 91, 103, 323, 716, 1035, 1492, 1504
HincII GTYRAC 2 cut(s) 702, 750
HindII GTYRAC 2 cut(s) 702, 750
HinfI GANTC 7 cut(s) 27, 451, 632, 1014, 1196, 1360, 1366
Hpy166II GTNNAC 5 cut(s) 157, 280, 478, 702, 750
Hpy188III TCNNGA 4 cut(s) 492, 515, 1011, 1439
Hpy8I GTNNAC 5 cut(s) 157, 280, 478, 702, 750
Hpy99I CGWCG 6 cut(s) 164, 189, 703, 751, 1034, 1109
HpyAV CCTTC 9 cut(s) 323, 693, 702, 867, 962, 1146, 1282, 1477, 1507
HpyCH4III ACNGT 3 cut(s) 316, 774, 1005
HpyCH4IV ACGT 3 cut(s) 122, 162, 1275
HpyCH4V TGCA 9 cut(s) 157, 280, 499, 641, 836, 919, 1187, 1456, 1576
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 212, 350, 586
HpyF3I CTNAG 5 cut(s) 230, 402, 605, 813, 1149
HpySE526I ACGT 3 cut(s) 122, 162, 1275
Hsp92I GRCGYC 4 cut(s) 323, 488, 716, 1035
Hsp92II CATG 7 cut(s) 97, 251, 267, 376, 508, 1196, 1386
HspAI GCGC 7 cut(s) 91, 103, 323, 716, 1035, 1492, 1504
KasI GGCGCC 3 cut(s) 322, 715, 1034
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 2 cut(s) 664, 1059
KroNI GCCGGC 2 cut(s) 666, 1061
Ksp22I TGATCA 1 cut(s) 1561
LmnI GCTCC 4 cut(s) 586, 1138, 1251, 1550
Lsp1109I GCAGC 7 cut(s) 423, 445, 820, 890, 903, 928, 1395
LweI GCATC 3 cut(s) 628, 1174, 1465
MaeI CTAG 3 cut(s) 582, 723, 1080
MaeII ACGT 3 cut(s) 122, 162, 1275
MaeIII GTNAC 3 cut(s) 296, 999, 1048
MboII GAAGA 8 cut(s) 687, 735, 865, 879, 1193, 1246, 1324, 1369
MflI RGATCY 5 cut(s) 34, 337, 511, 1585, 1599
MhlI GDGCHC 7 cut(s) 118, 159, 184, 282, 1127, 1248, 1547
MluCI AATT 4 cut(s) 381, 538, 1337, 1527
Mly113I GGCGCC 3 cut(s) 323, 716, 1035
MlyI GAGTC 2 cut(s) 445, 626
MmeI TCCRAC 6 cut(s) 327, 678, 803, 873, 1153, 1296
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 2 cut(s) 664, 1059
MseI TTAA 3 cut(s) 308, 1520, 1554
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 436
MspR9I CCNGG 4 cut(s) 32, 393, 862, 1463
MvaI CCWGG 3 cut(s) 393, 862, 1463
MvnI CGCG 1 cut(s) 1109
MwoI GCNNNNNNNGC 4 cut(s) 109, 212, 350, 586
NaeI GCCGGC 2 cut(s) 666, 1061
NarI GGCGCC 3 cut(s) 323, 716, 1035
NciI CCSGG 1 cut(s) 32
NcoI CCATGG 1 cut(s) 1382
NdeI CATATG 1 cut(s) 176
NgoMIV GCCGGC 2 cut(s) 664, 1059
NlaIII CATG 7 cut(s) 97, 251, 267, 376, 508, 1196, 1386
NmeAIII GCCGAG 4 cut(s) 182, 503, 692, 1238
NmuCI GTSAC 3 cut(s) 296, 999, 1048
NsbI TGCGCA 4 cut(s) 92, 104, 1493, 1505
NspI RCATGY 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 1439
PaqCI CACCTGC 2 cut(s) 827, 910
PcsI WCGNNNNNNNCGW 2 cut(s) 341, 704
PdiI GCCGGC 2 cut(s) 666, 1061
PfeI GAWTC 5 cut(s) 27, 1014, 1196, 1360, 1366
Pfl23II CGTACG 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 1278
PfoI TCCNGGA 2 cut(s) 30, 1461
PinAI ACCGGT 3 cut(s) 888, 958, 982
PleI GAGTC 2 cut(s) 445, 626
PluTI GGCGCC 3 cut(s) 326, 719, 1038
PpsI GAGTC 2 cut(s) 445, 626
PpuMI RGGWCCY 1 cut(s) 858
PshBI ATTAAT 1 cut(s) 308
Psp1406I AACGTT 2 cut(s) 122, 1275
Psp5II RGGWCCY 1 cut(s) 858
Psp6I CCWGG 3 cut(s) 391, 860, 1461
PspEI GGTNACC 2 cut(s) 999, 1048
PspFI CCCAGC 1 cut(s) 952
PspGI CCWGG 3 cut(s) 391, 860, 1461
PspLI CGTACG 1 cut(s) 163
PspPI GGNCC 6 cut(s) 386, 578, 858, 886, 956, 980
PspPPI RGGWCCY 1 cut(s) 858
PstI CTGCAG 3 cut(s) 501, 838, 921
PsuI RGATCY 5 cut(s) 34, 337, 511, 1585, 1599
PsyI GACNNNGTC 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 436
RsaI GTAC 4 cut(s) 165, 190, 646, 1087
RsaNI GTAC 4 cut(s) 164, 189, 645, 1086
RseI CAYNNNNRTG 1 cut(s) 98
SalI GTCGAC 2 cut(s) 700, 748
SaqAI TTAA 3 cut(s) 308, 1520, 1554
Sau96I GGNCC 6 cut(s) 386, 578, 858, 886, 956, 980
SchI GAGTC 2 cut(s) 445, 626
ScrFI CCNGG 4 cut(s) 32, 393, 862, 1463
SduI GDGCHC 7 cut(s) 118, 159, 184, 282, 1127, 1248, 1547
SfaNI GCATC 3 cut(s) 628, 1174, 1465
SfcI CTRYAG 5 cut(s) 474, 497, 834, 917, 974
SfoI GGCGCC 3 cut(s) 324, 717, 1036
Sfr274I CTCGAG 1 cut(s) 1439
SinI GGWCC 4 cut(s) 858, 886, 956, 980
SlaI CTCGAG 1 cut(s) 1439
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 453, 1439
SmoI CTYRAG 2 cut(s) 453, 1439
Sse9I AATT 4 cut(s) 381, 538, 1337, 1527
SspDI GGCGCC 3 cut(s) 322, 715, 1034
SspMI CTAG 3 cut(s) 582, 723, 1080
StyD4I CCNGG 4 cut(s) 30, 391, 860, 1461
StyI CCWWGG 3 cut(s) 138, 581, 1382
TaaI ACNGT 3 cut(s) 316, 774, 1005
TaiI ACGT 3 cut(s) 125, 165, 1278
TaqI TCGA 6 cut(s) 378, 701, 707, 749, 1096, 1440
TaqII GACCGA 1 cut(s) 987
TasI AATT 4 cut(s) 381, 538, 1337, 1527
TauI GCSGC 5 cut(s) 171, 174, 391, 1265, 1448
TfiI GAWTC 5 cut(s) 27, 1014, 1196, 1360, 1366
Tru1I TTAA 3 cut(s) 308, 1520, 1554
Tru9I TTAA 3 cut(s) 308, 1520, 1554
TscAI CASTG 5 cut(s) 84, 675, 1050, 1458, 1578
TseFI GTSAC 3 cut(s) 296, 999, 1048
TseI GCWGC 8 cut(s) 4, 433, 436, 833, 903, 916, 941, 1408
Tsp45I GTSAC 3 cut(s) 296, 999, 1048
TspDTI ATGAA 2 cut(s) 252, 1188
TspGWI ACGGA 5 cut(s) 39, 350, 458, 815, 1592
TspRI CASTG 5 cut(s) 84, 675, 1050, 1458, 1578
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 1278
VneI GTGCAC 2 cut(s) 155, 278
VpaK11BI GGWCC 4 cut(s) 858, 886, 956, 980
VspI ATTAAT 1 cut(s) 308
XceI RCATGY 1 cut(s) 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 1237
XhoI CTCGAG 1 cut(s) 1439
XmaJI CCTAGG 1 cut(s) 581
XmiI GTMKAC 3 cut(s) 477, 701, 749
XspI CTAG 3 cut(s) 582, 723, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.