FvH4_1g25072

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000123
Physical Location & Seq
Forward (+)
16890452 .. 16891268
817 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25072.t1

Sequence Viewer

Length: 543 bp
ATGATTGATATTTCTGTTGAGATGGTGATGACGGCGTCGCAACTGTCTCTGCCAGAGGGAGTGAAGCCGGAATGCGTACCTGGCGGTGGTTTTGAAAACGAGAAATCCTTTTATCTTTGTGGCCGTTTTCTGACCTTGAAAAACCGGTGGTTATCCCAGTTCTTTATGCGGCGCTTCTCTGGATCTGGGGAAGAGAAATATAGGATTCGTGATGGCGGCTTATGGTTCTTCAGTAATTTGATGTTGATCTTAGCTAATTATGATAGGGTTAGTGAGCTCGAGGAGGTGTCTCTCAACCTATTGGAGGTTTGGGTTGCCGTGACAAGGCTACGGGTGGGGATGCGAATTGAGAAGACGCTTCGGCGTTTTGGATCAGAGTGGGGTTTATGGTTCAGGTCGATCAGACTACGGATCGGCGAAAGCCCGGAGGGTTCTGCTGGTTTTTCGGGCATGGACACATTCTGCAAACCTGCGAAAGGATTCATTTCAGTCGACATAGTTTCTTTCATCTTCGAGATCTGGTCTCACCGTCGACCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

181

Amino Acids

20.78

Weight (kDa)

8.88

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 2 cut(s) 492, 532
AciI CCGC 3 cut(s) 84, 169, 216
AclWI GGATC 3 cut(s) 190, 379, 419
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 86, 304, 324, 476
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 95, 139
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 2 cut(s) 254, 277
AluI AGCT 2 cut(s) 254, 277
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 3 cut(s) 51, 294, 528
AlwI GGATC 3 cut(s) 190, 379, 419
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 37, 518
AvaI CYCGRG 1 cut(s) 278
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 279
BccI CCATC 2 cut(s) 16, 206
BceAI ACGGC 3 cut(s) 48, 108, 302
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 3 cut(s) 51, 294, 528
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 478
BglII AGATCT 1 cut(s) 516
BisI GCNGC 2 cut(s) 170, 217
BlsI GCNGC 2 cut(s) 171, 218
Bme1390I CCNGG 2 cut(s) 81, 425
BmeT110I CYCGRG 1 cut(s) 278
BmrFI CCNGG 2 cut(s) 81, 425
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 528
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 304, 324, 476
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 345
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 4 cut(s) 86, 304, 324, 476
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 296
BshFI GGCC 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 3 cut(s) 68, 145, 425
BslI CCNNNNNNNGG 4 cut(s) 86, 304, 324, 476
BsmAI GTCTC 3 cut(s) 51, 294, 528
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 528
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 6 cut(s) 182, 246, 371, 399, 411, 516
BspACI CCGC 3 cut(s) 84, 169, 216
BspANI GGCC 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 3 cut(s) 190, 379, 419
BspTNI GGTCTC 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 144
BssMI GATC 6 cut(s) 182, 246, 371, 399, 411, 516
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 45, 530
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 250
BstENI CCTNNNNNAGG 2 cut(s) 302, 474
BstF5I GGATG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 6 cut(s) 185, 249, 374, 402, 414, 519
BstMAI GTCTC 3 cut(s) 51, 294, 528
BstMBI GATC 6 cut(s) 182, 246, 371, 399, 411, 516
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 79, 423
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 2 cut(s) 182, 516
BstYI RGATCY 2 cut(s) 182, 516
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 144
CseI GACGC 2 cut(s) 24, 364
Csp6I GTAC 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 144
CviAII CATG 1 cut(s) 451
CviJI RGCY 7 cut(s) 67, 123, 219, 254, 277, 328, 423
CviKI_1 RGCY 7 cut(s) 67, 123, 219, 254, 277, 328, 423
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 250
DpnI GATC 6 cut(s) 184, 248, 373, 401, 413, 518
DpnII GATC 6 cut(s) 182, 246, 371, 399, 411, 516
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 528
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 277
EcoNI CCTNNNNNAGG 2 cut(s) 302, 474
EcoRII CCWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 1 cut(s) 454
FaiI YATR 7 cut(s) 167, 201, 223, 261, 388, 452, 497
FatI CATG 1 cut(s) 450
FblI GTMKAC 2 cut(s) 492, 532
Fnu4HI GCNGC 2 cut(s) 170, 217
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 170, 217
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 170, 217
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 1 cut(s) 123
HapII CCGG 3 cut(s) 68, 145, 425
HgaI GACGC 2 cut(s) 24, 364
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 2 cut(s) 493, 533
HindII GTYRAC 2 cut(s) 493, 533
HinfI GANTC 2 cut(s) 205, 480
HpaII CCGG 3 cut(s) 68, 145, 425
HphI GGTGA 2 cut(s) 37, 518
Hpy166II GTNNAC 2 cut(s) 493, 533
Hpy188I TCNGA 3 cut(s) 132, 376, 404
Hpy188III TCNNGA 3 cut(s) 180, 209, 514
Hpy8I GTNNAC 2 cut(s) 493, 533
Hpy99I CGWCG 2 cut(s) 40, 534
HpyCH4III ACNGT 2 cut(s) 45, 530
HpyCH4V TGCA 1 cut(s) 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 250
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 6 cut(s) 182, 246, 371, 399, 411, 516
LweI GCATC 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 319
MalI GATC 6 cut(s) 184, 248, 373, 401, 413, 518
MboI GATC 6 cut(s) 182, 246, 371, 399, 411, 516
MboII GAAGA 4 cut(s) 203, 220, 364, 502
MflI RGATCY 2 cut(s) 182, 516
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 3 cut(s) 235, 256, 345
MnlI CCTC 5 cut(s) 49, 274, 277, 298, 421
MroXI GAANNNNTTC 1 cut(s) 479
MspI CCGG 3 cut(s) 68, 145, 425
MspR9I CCNGG 2 cut(s) 81, 425
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 425
NdeII GATC 6 cut(s) 182, 246, 371, 399, 411, 516
NlaIII CATG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 278
PctI GAATGC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 205, 480
PflFI GACNNNGTC 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 2 cut(s) 171, 218
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 278
PsuI RGATCY 2 cut(s) 182, 516
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SacI GAGCTC 1 cut(s) 279
SalI GTCGAC 2 cut(s) 491, 531
SatI GCNGC 2 cut(s) 170, 217
Sau3AI GATC 6 cut(s) 182, 246, 371, 399, 411, 516
ScrFI CCNGG 2 cut(s) 81, 425
SduI GDGCHC 1 cut(s) 279
SetI ASST 9 cut(s) 82, 137, 256, 279, 288, 300, 309, 398, 472
SfaNI GCATC 1 cut(s) 330
Sfr274I CTCGAG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 235, 256, 345
SsiI CCGC 3 cut(s) 84, 169, 216
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 79, 423
TaaI ACNGT 2 cut(s) 45, 530
TaqI TCGA 5 cut(s) 279, 398, 492, 513, 532
TasI AATT 3 cut(s) 235, 256, 345
TauI GCSGC 2 cut(s) 172, 219
TfiI GAWTC 2 cut(s) 205, 480
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 472, 496
TspGWI ACGGA 1 cut(s) 424
Tth111I GACNNNGTC 1 cut(s) 34
XagI CCTNNNNNAGG 2 cut(s) 302, 474
XhoI CTCGAG 1 cut(s) 278
XmiI GTMKAC 2 cut(s) 492, 532
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.