Rmu_sc0003369.1_g000015

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003369.1
OG0000123
Physical Location & Seq
Forward (+)
36009 .. 37931
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003369.1_g000015.1.cds

Sequence Viewer

Length: 1662 bp
atggcggaggagaacacggtggctccttatgcactttctgaggaggccattgtgagccttgttggaggagagaatgcaatccatgattcattcttctacctttgtggtcggcttttatccaagaagacagtggtgatcccgtcattctcggcggcgatctccaacgtttgggggttgaaggagagagttctgatccggcaggaggaggatatctttgtcttccaattcaaggataatctcagggcggctcaactgcatctcctggaggtttgggtggcggtgaaggggttgcgcattgctatgcgcaacgagaaggccttaaccttaattggacgagtgttgggttccttcattcgagttgatcagggggcggtgcagcggaaggatccgattcagaggatccgtgtgtatgaaaaatgtcatgggctgtgtgcggcttgtggctttttcagtcatggtgggggtatatgtgacgacagattggaggcggaggcgggcgttgcgctggctctagcggtgtctgaccacgcggtggaaacaaacccaggtggattggcggcatcgaaagcagcggtttctgggttggttgctgggtcaaagatgctggtgacggtgggactaggtgcgccagaggtttctggggtggcggaagtggctggaacgctggtgctaggatcgggttcgctgaccgcgatgagctctgtacgcgtttcggaaaattcagcggcaaaccctaattttgaatcagggttgactggtgggttgactgggactgctcagcttagccttgggccggggctgcatgggactgggccggactactttactgatggggccaatataaatggccttgctgttgggctaaattcagaaaaacatcttaccttgggtgtgaaaaagaagagttttaagcctggaaggatccgattcagaggatccgtgtggtgcaggacgttcagcggaggatttgggcacggcggacctttcaattctctccgacggtctcgattggaggcggaggcgcgcgctgcgctggctctagcggtgtcggaccacgcggtggaaacaaacccaggtggattggcggcgtcgaaagcagcggtttctgggttggttgctgggtcaaagatgctggtgacggtgggactaggtgggccagaggtttctggggtggcggaagtggctggaacgctggtgctaggatcgggttcgccgaccgcgatgagctctgtacgcgttccgaaaaattcggcagcaaaccctaattttgaatcagggttgactgggactactcagcttagccttgggccggggctgcatgggactgggccggactactttactgatggagccaatataaatggctttgctgttgggctaaattcagaaaaacatcttaccttgggtgtgaaaaagaagagttttaagcctaggttggctttcatacctccggaatttcaccttggtgagttggtggaggttccgattttgctagggacagctccaaagaaaaaaggttgtcctgttggacaaaggaataagcgtactttgaggaatgagaaaatgaaggtaacaatgatggtgcaaatatcagctccaactcgccagggaaggagctggctattgtttaattgctttgattggggtcttaagcatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

553

Amino Acids

57.86

Weight (kDa)

9.41

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 293, 305
AccB7I CCANNNNNTGG 3 cut(s) 168, 532, 1060
AccII CGCG 8 cut(s) 530, 692, 708, 1024, 1026, 1058, 1220, 1236
AccIII TCCGGA 1 cut(s) 1450
AclI AACGTT 1 cut(s) 165
AcsI RAATTY 5 cut(s) 718, 865, 1246, 1381, 1454
AcyI GRCGYC 1 cut(s) 1088
AdeI CACNNNGTG 2 cut(s) 532, 1060
AfaI GTAC 3 cut(s) 705, 1233, 1546
AfiI CCNNNNNNNGG 7 cut(s) 168, 202, 229, 532, 793, 1060, 1309
AflII CTTAAG 1 cut(s) 1649
AflIII ACRYGT 2 cut(s) 706, 1234
AgsI TTSAA 5 cut(s) 178, 229, 743, 988, 1271
AjnI CCWGG 5 cut(s) 261, 544, 913, 1072, 1605
AjuI GAANNNNNNNTTGG 2 cut(s) 1446, 1478
AleI CACNNNNGTG 1 cut(s) 1464
AluBI AGCT 7 cut(s) 699, 781, 1227, 1297, 1502, 1595, 1617
AluI AGCT 7 cut(s) 699, 781, 1227, 1297, 1502, 1595, 1617
Alw21I GWGCWC 2 cut(s) 701, 1229
Alw26I GTCTC 1 cut(s) 1008
Aor13HI TCCGGA 1 cut(s) 1450
AoxI GGCC 9 cut(s) 45, 315, 791, 812, 834, 847, 1154, 1307, 1328
ApeKI GCWGC 7 cut(s) 376, 569, 799, 1028, 1097, 1253, 1315
ApoI RAATTY 5 cut(s) 718, 865, 1246, 1381, 1454
AspA2I CCTAGG 1 cut(s) 1430
AspLEI GCGC 8 cut(s) 294, 306, 505, 628, 1024, 1026, 1028, 1033
AspS9I GGNCC 8 cut(s) 791, 812, 834, 980, 1051, 1154, 1307, 1328
AsuC2I CCSGG 2 cut(s) 795, 1311
AsuHPI GGTGA 6 cut(s) 145, 292, 619, 1147, 1451, 1478
AvaII GGWCC 2 cut(s) 980, 1051
AvrII CCTAGG 1 cut(s) 1430
BaeGI GKGCMC 1 cut(s) 975
BamHI GGATCC 4 cut(s) 385, 399, 921, 935
BanII GRGCYC 2 cut(s) 701, 1229
BbsI GAAGAC 2 cut(s) 131, 211
Bbv12I GWGCWC 2 cut(s) 701, 1229
BbvI GCAGC 7 cut(s) 388, 581, 786, 1015, 1109, 1265, 1302
BccI CCATC 3 cut(s) 824, 1340, 1573
BceAI ACGGC 1 cut(s) 991
BciT130I CCWGG 5 cut(s) 263, 546, 915, 1074, 1607
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 795, 1311
BcoDI GTCTC 1 cut(s) 1008
BfaI CTAG 8 cut(s) 512, 620, 671, 1040, 1148, 1199, 1431, 1493
BfrI CTTAAG 1 cut(s) 1649
BlnI CCTAGG 1 cut(s) 1430
BlpI GCTNAGC 3 cut(s) 777, 782, 1298
Bme1390I CCNGG 7 cut(s) 263, 546, 795, 915, 1074, 1311, 1607
Bme18I GGWCC 2 cut(s) 980, 1051
BmgT120I GGNCC 8 cut(s) 791, 812, 834, 980, 1051, 1154, 1307, 1328
BmiI GGNNCC 9 cut(s) 24, 346, 387, 401, 835, 923, 937, 1351, 1482
BmrFI CCNGG 7 cut(s) 263, 546, 795, 915, 1074, 1311, 1607
BmrI ACTGGG 4 cut(s) 777, 819, 1293, 1335
BmsI GCATC 4 cut(s) 265, 569, 591, 1119
BmuI ACTGGG 4 cut(s) 777, 819, 1293, 1335
BpiI GAAGAC 2 cut(s) 131, 211
BpmI CTGGAG 1 cut(s) 284
Bpu1102I GCTNAGC 3 cut(s) 777, 782, 1298
BpuMI CCSGG 2 cut(s) 795, 1311
BsaHI GRCGYC 1 cut(s) 1088
BsaI GGTCTC 1 cut(s) 1008
BsaWI WCCGGW 1 cut(s) 1450
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 243, 273
Bsc4I CCNNNNNNNGG 7 cut(s) 168, 202, 229, 532, 793, 1060, 1309
Bse1I ACTGG 5 cut(s) 760, 772, 814, 1288, 1330
Bse3DI GCAATG 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 1450
BseBI CCWGG 5 cut(s) 263, 546, 915, 1074, 1607
BseLI CCNNNNNNNGG 7 cut(s) 168, 202, 229, 532, 793, 1060, 1309
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 4 cut(s) 30, 253, 791, 1307
BseNI ACTGG 5 cut(s) 760, 772, 814, 1288, 1330
BsePI GCGCGC 2 cut(s) 1022, 1024
BseRI GAGGAG 4 cut(s) 23, 56, 81, 218
BseSI GKGCMC 1 cut(s) 975
BseXI GCAGC 7 cut(s) 388, 581, 786, 1015, 1109, 1265, 1302
BseYI CCCAGC 2 cut(s) 590, 1118
BsgI GTGCAG 2 cut(s) 395, 967
Bsh1236I CGCG 8 cut(s) 530, 692, 708, 1024, 1026, 1058, 1220, 1236
Bsh1285I CGRYCG 1 cut(s) 1218
BshFI GGCC 9 cut(s) 47, 317, 793, 814, 836, 849, 1156, 1309, 1330
BsiEI CGRYCG 1 cut(s) 1218
BsiHKAI GWGCWC 2 cut(s) 701, 1229
BsiSI CCGG 6 cut(s) 196, 794, 815, 1310, 1331, 1451
BslFI GGGAC 7 cut(s) 630, 784, 820, 1158, 1300, 1336, 1510
BslI CCNNNNNNNGG 7 cut(s) 168, 202, 229, 532, 793, 1060, 1309
BsmAI GTCTC 1 cut(s) 1008
BsmFI GGGAC 7 cut(s) 630, 784, 820, 1158, 1300, 1336, 1510
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 9 cut(s) 47, 317, 793, 814, 836, 849, 1156, 1309, 1330
Bso31I GGTCTC 1 cut(s) 1008
Bsp1286I GDGCHC 3 cut(s) 701, 975, 1229
Bsp13I TCCGGA 1 cut(s) 1450
Bsp1720I GCTNAGC 3 cut(s) 777, 782, 1298
BspANI GGCC 9 cut(s) 47, 317, 793, 814, 836, 849, 1156, 1309, 1330
BspCNI CTCAG 4 cut(s) 31, 252, 790, 1306
BspEI TCCGGA 1 cut(s) 1450
BspFNI CGCG 8 cut(s) 530, 692, 708, 1024, 1026, 1058, 1220, 1236
BspLI GGNNCC 9 cut(s) 24, 346, 387, 401, 835, 923, 937, 1351, 1482
BspTI CTTAAG 1 cut(s) 1649
BspTNI GGTCTC 1 cut(s) 1008
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 5 cut(s) 760, 772, 814, 1288, 1330
BssHII GCGCGC 2 cut(s) 1022, 1024
BssNI GRCGYC 1 cut(s) 1088
BssT1I CCWWGG 6 cut(s) 787, 885, 1303, 1401, 1430, 1462
Bst2UI CCWGG 5 cut(s) 263, 546, 915, 1074, 1607
Bst4CI ACNGT 5 cut(s) 19, 130, 613, 1002, 1141
Bst6I CTCTTC 2 cut(s) 896, 1412
BstACI GRCGYC 1 cut(s) 1088
BstAFI CTTAAG 1 cut(s) 1649
BstC8I GCNNGC 6 cut(s) 496, 507, 1024, 1026, 1035, 1619
BstDEI CTNAG 6 cut(s) 39, 239, 777, 782, 1293, 1298
BstFNI CGCG 8 cut(s) 530, 692, 708, 1024, 1026, 1058, 1220, 1236
BstHHI GCGC 8 cut(s) 294, 306, 505, 628, 1024, 1026, 1028, 1033
BstMAI GTCTC 1 cut(s) 1008
BstMCI CGRYCG 1 cut(s) 1218
BstNI CCWGG 5 cut(s) 263, 546, 915, 1074, 1607
BstNSI RCATGY 1 cut(s) 1658
BstSCI CCNGG 7 cut(s) 261, 544, 793, 913, 1072, 1309, 1605
BstSLI GKGCMC 1 cut(s) 975
BstUI CGCG 8 cut(s) 530, 692, 708, 1024, 1026, 1058, 1220, 1236
BstV1I GCAGC 7 cut(s) 388, 581, 786, 1015, 1109, 1265, 1302
BstV2I GAAGAC 2 cut(s) 131, 211
BstX2I RGATCY 4 cut(s) 385, 399, 921, 935
BstYI RGATCY 4 cut(s) 385, 399, 921, 935
BsuRI GGCC 9 cut(s) 47, 317, 793, 814, 836, 849, 1156, 1309, 1330
BtgZI GCGATG 2 cut(s) 707, 1235
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 6 cut(s) 496, 507, 1024, 1026, 1035, 1619
CfoI GCGC 8 cut(s) 294, 306, 505, 628, 1024, 1026, 1028, 1033
Cfr13I GGNCC 8 cut(s) 791, 812, 834, 980, 1051, 1154, 1307, 1328
CseI GACGC 1 cut(s) 1077
Csp6I GTAC 3 cut(s) 704, 1232, 1545
CviAII CATG 6 cut(s) 83, 422, 455, 803, 1319, 1655
CviQI GTAC 3 cut(s) 704, 1232, 1545
DdeI CTNAG 6 cut(s) 39, 239, 777, 782, 1293, 1298
DraIII CACNNNGTG 2 cut(s) 532, 1060
Eam1104I CTCTTC 2 cut(s) 896, 1412
EarI CTCTTC 2 cut(s) 896, 1412
EciI GGCGGA 6 cut(s) 20, 503, 662, 993, 1031, 1190
Ecl136II GAGCTC 2 cut(s) 699, 1227
Eco130I CCWWGG 6 cut(s) 787, 885, 1303, 1401, 1430, 1462
Eco147I AGGCCT 1 cut(s) 317
Eco24I GRGCYC 2 cut(s) 701, 1229
Eco31I GGTCTC 1 cut(s) 1008
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 980, 1051
Eco53kI GAGCTC 2 cut(s) 699, 1227
EcoICRI GAGCTC 2 cut(s) 699, 1227
EcoRII CCWGG 5 cut(s) 261, 544, 913, 1072, 1605
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 6 cut(s) 787, 885, 1303, 1401, 1430, 1462
EcoT38I GRGCYC 2 cut(s) 701, 1229
ErhI CCWWGG 6 cut(s) 787, 885, 1303, 1401, 1430, 1462
FaeI CATG 6 cut(s) 86, 425, 458, 806, 1322, 1658
FaqI GGGAC 7 cut(s) 630, 784, 820, 1158, 1300, 1336, 1510
FatI CATG 6 cut(s) 82, 421, 454, 802, 1318, 1654
FauI CCCGC 1 cut(s) 487
FbaI TGATCA 1 cut(s) 361
FriOI GRGCYC 2 cut(s) 701, 1229
FspBI CTAG 8 cut(s) 512, 620, 671, 1040, 1148, 1199, 1431, 1493
FspI TGCGCA 2 cut(s) 293, 305
GlaI GCGC 8 cut(s) 293, 305, 504, 627, 1023, 1025, 1027, 1032
GsaI CCCAGC 2 cut(s) 594, 1122
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 9 cut(s) 47, 317, 793, 814, 836, 849, 1156, 1309, 1330
HapII CCGG 6 cut(s) 196, 794, 815, 1310, 1331, 1451
HgaI GACGC 1 cut(s) 1077
HhaI GCGC 8 cut(s) 294, 306, 505, 628, 1024, 1026, 1028, 1033
Hin1I GRCGYC 1 cut(s) 1088
Hin1II CATG 6 cut(s) 86, 425, 458, 806, 1322, 1658
Hin6I GCGC 8 cut(s) 292, 304, 503, 626, 1022, 1024, 1026, 1031
HinP1I GCGC 8 cut(s) 292, 304, 503, 626, 1022, 1024, 1026, 1031
HincII GTYRAC 3 cut(s) 753, 765, 1281
HindII GTYRAC 3 cut(s) 753, 765, 1281
HinfI GANTC 5 cut(s) 86, 391, 743, 927, 1271
HpaII CCGG 6 cut(s) 196, 794, 815, 1310, 1331, 1451
HphI GGTGA 6 cut(s) 145, 292, 619, 1147, 1451, 1478
Hpy166II GTNNAC 3 cut(s) 753, 765, 1281
Hpy188III TCNNGA 2 cut(s) 1005, 1451
Hpy8I GTNNAC 3 cut(s) 753, 765, 1281
Hpy99I CGWCG 2 cut(s) 1002, 1093
HpyAV CCTTC 8 cut(s) 172, 277, 307, 358, 376, 912, 1561, 1605
HpyCH4III ACNGT 5 cut(s) 19, 130, 613, 1002, 1141
HpyCH4IV ACGT 2 cut(s) 165, 953
HpyCH4V TGCA 8 cut(s) 32, 77, 256, 376, 802, 948, 1318, 1585
HpyF3I CTNAG 6 cut(s) 39, 239, 777, 782, 1293, 1298
HpySE526I ACGT 2 cut(s) 165, 953
Hsp92I GRCGYC 1 cut(s) 1088
Hsp92II CATG 6 cut(s) 86, 425, 458, 806, 1322, 1658
HspAI GCGC 8 cut(s) 292, 304, 503, 626, 1022, 1024, 1026, 1031
Kpn2I TCCGGA 1 cut(s) 1450
Ksp22I TGATCA 1 cut(s) 361
LmnI GCTCC 5 cut(s) 28, 1349, 1507, 1600, 1614
Lsp1109I GCAGC 7 cut(s) 388, 581, 786, 1015, 1109, 1265, 1302
LweI GCATC 4 cut(s) 265, 569, 591, 1119
MaeI CTAG 8 cut(s) 512, 620, 671, 1040, 1148, 1199, 1431, 1493
MaeII ACGT 2 cut(s) 165, 953
MaeIII GTNAC 4 cut(s) 470, 607, 1135, 1570
MboII GAAGA 5 cut(s) 85, 136, 211, 913, 1429
MflI RGATCY 4 cut(s) 385, 399, 921, 935
MhlI GDGCHC 3 cut(s) 701, 975, 1229
MluI ACGCGT 2 cut(s) 706, 1234
MmeI TCCRAC 6 cut(s) 43, 186, 1021, 1029, 1507, 1622
MroI TCCGGA 1 cut(s) 1450
MseI TTAA 6 cut(s) 320, 326, 909, 1425, 1629, 1650
MslI CAYNNNNRTG 2 cut(s) 299, 1464
MspA1I CMGCKG 5 cut(s) 379, 572, 725, 960, 1100
MspCI CTTAAG 1 cut(s) 1649
MspI CCGG 6 cut(s) 196, 794, 815, 1310, 1331, 1451
MspR9I CCNGG 7 cut(s) 263, 546, 795, 915, 1074, 1311, 1607
MteI GCGCNGCGC 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 5 cut(s) 263, 546, 915, 1074, 1607
MvnI CGCG 8 cut(s) 530, 692, 708, 1024, 1026, 1058, 1220, 1236
NciI CCSGG 2 cut(s) 795, 1311
NlaIII CATG 6 cut(s) 86, 425, 458, 806, 1322, 1658
NlaIV GGNNCC 9 cut(s) 24, 346, 387, 401, 835, 923, 937, 1351, 1482
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 3 cut(s) 470, 607, 1135
NsbI TGCGCA 2 cut(s) 293, 305
NspI RCATGY 1 cut(s) 1658
OliI CACNNNNGTG 1 cut(s) 1464
PauI GCGCGC 2 cut(s) 1022, 1024
PceI AGGCCT 1 cut(s) 317
PcsI WCGNNNNNNNCGW 3 cut(s) 689, 1211, 1217
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 5 cut(s) 86, 391, 743, 927, 1271
PflMI CCANNNNNTGG 3 cut(s) 168, 532, 1060
PfoI TCCNGGA 1 cut(s) 261
Psp124BI GAGCTC 2 cut(s) 701, 1229
Psp1406I AACGTT 1 cut(s) 165
Psp6I CCWGG 5 cut(s) 261, 544, 913, 1072, 1605
PspFI CCCAGC 2 cut(s) 590, 1118
PspGI CCWGG 5 cut(s) 261, 544, 913, 1072, 1605
PspN4I GGNNCC 9 cut(s) 24, 346, 387, 401, 835, 923, 937, 1351, 1482
PspPI GGNCC 8 cut(s) 791, 812, 834, 980, 1051, 1154, 1307, 1328
PsuI RGATCY 4 cut(s) 385, 399, 921, 935
PteI GCGCGC 2 cut(s) 1022, 1024
RsaI GTAC 3 cut(s) 705, 1233, 1546
RsaNI GTAC 3 cut(s) 704, 1232, 1545
RseI CAYNNNNRTG 2 cut(s) 299, 1464
SacI GAGCTC 2 cut(s) 701, 1229
SaqAI TTAA 6 cut(s) 320, 326, 909, 1425, 1629, 1650
Sau96I GGNCC 8 cut(s) 791, 812, 834, 980, 1051, 1154, 1307, 1328
ScrFI CCNGG 7 cut(s) 263, 546, 795, 915, 1074, 1311, 1607
SduI GDGCHC 3 cut(s) 701, 975, 1229
SfaNI GCATC 4 cut(s) 265, 569, 591, 1119
SinI GGWCC 2 cut(s) 980, 1051
SmiMI CAYNNNNRTG 2 cut(s) 299, 1464
SmlI CTYRAG 1 cut(s) 1649
SmoI CTYRAG 1 cut(s) 1649
SseBI AGGCCT 1 cut(s) 317
SspMI CTAG 8 cut(s) 512, 620, 671, 1040, 1148, 1199, 1431, 1493
SstI GAGCTC 2 cut(s) 701, 1229
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 7 cut(s) 261, 544, 793, 913, 1072, 1309, 1605
StyI CCWWGG 6 cut(s) 787, 885, 1303, 1401, 1430, 1462
TaaI ACNGT 5 cut(s) 19, 130, 613, 1002, 1141
TaiI ACGT 2 cut(s) 168, 956
TaqI TCGA 4 cut(s) 355, 563, 1006, 1091
TauI GCSGC 6 cut(s) 155, 248, 437, 560, 728, 1088
TfiI GAWTC 5 cut(s) 86, 391, 743, 927, 1271
Tru1I TTAA 6 cut(s) 320, 326, 909, 1425, 1629, 1650
Tru9I TTAA 6 cut(s) 320, 326, 909, 1425, 1629, 1650
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 3 cut(s) 470, 607, 1135
TseI GCWGC 7 cut(s) 376, 569, 799, 1028, 1097, 1253, 1315
Tsp45I GTSAC 3 cut(s) 470, 607, 1135
TspDTI ATGAA 5 cut(s) 78, 340, 426, 1432, 1580
TspGWI ACGGA 2 cut(s) 392, 928
TspRI CASTG 1 cut(s) 135
Van91I CCANNNNNTGG 3 cut(s) 168, 532, 1060
Vha464I CTTAAG 1 cut(s) 1649
VpaK11BI GGWCC 2 cut(s) 980, 1051
XapI RAATTY 5 cut(s) 718, 865, 1246, 1381, 1454
XceI RCATGY 1 cut(s) 1658
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 1430
XspI CTAG 8 cut(s) 512, 620, 671, 1040, 1148, 1199, 1431, 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.