Rmu_sc0008861.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008861.1
OG0000123
Physical Location & Seq
Reverse (-)
25081 .. 28530
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008861.1_g000008.1.cds

Sequence Viewer

Length: 774 bp
atggcggcggaggaggctaccgtgcatttggttgggggcgaggaagcaatccaagatccttttttctatgtttgtggccgattgctttcccagaaacaagtctttctaccgtcgttttcggcaacgatttctggcatctgggggttgaaagaacgcatgttgatccgtgaggagggagaagggatctatatgcttcacttggcggattatgatggtatctgggatctggcagaggttccgttgaattctatggcgacggtgagagggttgcgcatggctatgtgcaatgatcgtgccctaaccctgcttgggaacgaattgggggtatttgtgctttatgatcaaggggcgttgcagagaaaagatcctgtacaacgagtccggattatgcacgacgttcaccggcgcatatgggctcgacgtatgtactccttctcggcagcggtggaggtcgaactcgaactaaggtatgagaaatgccacggtatatgcaggggctgtggttttttcgaccatggcatgggtggctgcgatggtatgctgacaacgataatggcttcggggaacattgctccaccagtggagcaaaattcttgcaacggaaaacatttgtcgtcgctaatagtcttgcgacggcgaattgctgtggcaaatactattggagacgccaccaacggcgtcggaagcattgctgtcgccaatggtcttttgcgacggcaaaagagccttttgctaccaagatgggccgtggctattgcaattttttttttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

257

Amino Acids

28.48

Weight (kDa)

7.64

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 520
AccIII TCCGGA 1 cut(s) 381
AciI CCGC 4 cut(s) 5, 8, 203, 443
AclWI GGATC 5 cut(s) 50, 157, 191, 231, 359
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 2 cut(s) 244, 589
AcyI GRCGYC 2 cut(s) 666, 678
AfaI GTAC 2 cut(s) 372, 428
AfiI CCNNNNNNNGG 3 cut(s) 172, 309, 520
AgsI TTSAA 2 cut(s) 148, 244
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 5 cut(s) 50, 157, 191, 231, 359
AlwNI CAGNNNCTG 1 cut(s) 498
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 2 cut(s) 76, 744
ApeKI GCWGC 2 cut(s) 440, 528
ApoI RAATTY 2 cut(s) 244, 589
AspLEI GCGC 2 cut(s) 273, 408
AspS9I GGNCC 1 cut(s) 744
AsuHPI GGTGA 2 cut(s) 271, 392
BaeGI GKGCMC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 452, 515
BccI CCATC 3 cut(s) 206, 527, 735
BceAI ACGGC 4 cut(s) 650, 691, 731, 731
BcgI CGANNNNNNTGC 2 cut(s) 676, 710
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 657
BisI GCNGC 3 cut(s) 6, 441, 529
BlsI GCNGC 3 cut(s) 7, 442, 530
BmgT120I GGNCC 1 cut(s) 744
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 666, 678
BsaJI CCNNGG 3 cut(s) 481, 514, 747
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 309, 520
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 3 cut(s) 292, 567, 687
BseAI TCCGGA 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 481, 514, 747
BseLI CCNNNNNNNGG 3 cut(s) 172, 309, 520
BseMI GCAATG 3 cut(s) 292, 567, 687
BseNI ACTGG 1 cut(s) 578
BseRI GAGGAG 2 cut(s) 26, 185
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 2 cut(s) 452, 515
BshFI GGCC 2 cut(s) 78, 746
BsiSI CCGG 2 cut(s) 382, 403
BslI CCNNNNNNNGG 3 cut(s) 172, 309, 520
BsmAI GTCTC 1 cut(s) 657
BsmBI CGTCTC 1 cut(s) 657
BsnI GGCC 2 cut(s) 78, 746
Bsp1286I GDGCHC 2 cut(s) 298, 418
Bsp13I TCCGGA 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
Bsp19I CCATGG 1 cut(s) 514
BspACI CCGC 4 cut(s) 5, 8, 203, 443
BspANI GGCC 2 cut(s) 78, 746
BspEI TCCGGA 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 5 cut(s) 50, 157, 191, 231, 359
BsrDI GCAATG 3 cut(s) 292, 567, 687
BsrFI RCCGGY 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 481, 514, 747
BssMI GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
BssNI GRCGYC 2 cut(s) 666, 678
BssT1I CCWWGG 1 cut(s) 514
Bst4CI ACNGT 4 cut(s) 22, 111, 259, 485
BstACI GRCGYC 2 cut(s) 666, 678
BstAUI TGTACA 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 464
BstDSI CCRYGG 3 cut(s) 481, 514, 747
BstHHI GCGC 2 cut(s) 273, 408
BstKTI GATC 7 cut(s) 58, 165, 186, 226, 292, 343, 367
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
BstMWI GCNNNNNNNGC 3 cut(s) 14, 525, 684
BstNSI RCATGY 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 452, 515
BstX2I RGATCY 4 cut(s) 55, 183, 223, 364
BstYI RGATCY 4 cut(s) 55, 183, 223, 364
BsuRI GGCC 2 cut(s) 78, 746
BtgI CCRYGG 3 cut(s) 481, 514, 747
BtgZI GCGATG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 585
CaiI CAGNNNCTG 1 cut(s) 498
CfoI GCGC 2 cut(s) 273, 408
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 744
CseI GACGC 2 cut(s) 667, 674
Csp6I GTAC 2 cut(s) 371, 427
CviAII CATG 4 cut(s) 157, 274, 515, 520
CviQI GTAC 2 cut(s) 371, 427
DdeI CTNAG 1 cut(s) 464
DpnI GATC 7 cut(s) 57, 164, 185, 225, 291, 342, 366
DpnII GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
EaeI YGGCCR 1 cut(s) 76
EciI GGCGGA 2 cut(s) 23, 218
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 657
FaeI CATG 4 cut(s) 160, 277, 518, 523
FatI CATG 4 cut(s) 156, 273, 514, 519
FauNDI CATATG 1 cut(s) 410
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 6, 441, 529
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 6, 441, 529
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 2 cut(s) 272, 407
GluI GCNGC 3 cut(s) 6, 441, 529
HaeIII GGCC 2 cut(s) 78, 746
HapII CCGG 2 cut(s) 382, 403
HgaI GACGC 2 cut(s) 667, 674
HhaI GCGC 2 cut(s) 273, 408
Hin1I GRCGYC 2 cut(s) 666, 678
Hin1II CATG 4 cut(s) 160, 277, 518, 523
Hin6I GCGC 2 cut(s) 271, 406
HinP1I GCGC 2 cut(s) 271, 406
HinfI GANTC 1 cut(s) 378
HpaII CCGG 2 cut(s) 382, 403
HphI GGTGA 2 cut(s) 271, 392
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 1 cut(s) 683
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 8 cut(s) 115, 259, 398, 423, 619, 636, 683, 717
HpyAV CCTTC 2 cut(s) 173, 442
HpyCH4III ACNGT 4 cut(s) 22, 111, 259, 485
HpyCH4IV ACGT 2 cut(s) 396, 421
HpyCH4V TGCA 7 cut(s) 25, 285, 355, 391, 492, 597, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 525, 684
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 2 cut(s) 396, 421
Hsp92I GRCGYC 2 cut(s) 666, 678
Hsp92II CATG 4 cut(s) 160, 277, 518, 523
HspAI GCGC 2 cut(s) 271, 406
Kpn2I TCCGGA 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
LmnI GCTCC 2 cut(s) 577, 583
Lsp1109I GCAGC 2 cut(s) 452, 515
LweI GCATC 1 cut(s) 144
MaeII ACGT 2 cut(s) 396, 421
MalI GATC 7 cut(s) 57, 164, 185, 225, 291, 342, 366
MboI GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
MflI RGATCY 4 cut(s) 55, 183, 223, 364
MhlI GDGCHC 2 cut(s) 298, 418
MluCI AATT 5 cut(s) 244, 317, 589, 639, 759
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 8 cut(s) 4, 7, 34, 163, 166, 226, 257, 442
MroI TCCGGA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 382, 403
MwoI GCNNNNNNNGC 3 cut(s) 14, 525, 684
NcoI CCATGG 1 cut(s) 514
NdeI CATATG 1 cut(s) 410
NdeII GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
NlaIII CATG 4 cut(s) 160, 277, 518, 523
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 416
NsbI TGCGCA 1 cut(s) 272
NspI RCATGY 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 520
PkrI GCNGC 3 cut(s) 7, 442, 530
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 744
PstNI CAGNNNCTG 1 cut(s) 498
PsuI RGATCY 4 cut(s) 55, 183, 223, 364
RsaI GTAC 2 cut(s) 372, 428
RsaNI GTAC 2 cut(s) 371, 427
RseI CAYNNNNRTG 1 cut(s) 278
SatI GCNGC 3 cut(s) 6, 441, 529
Sau3AI GATC 7 cut(s) 55, 162, 183, 223, 289, 340, 364
Sau96I GGNCC 1 cut(s) 744
SchI GAGTC 1 cut(s) 387
SduI GDGCHC 2 cut(s) 298, 418
SetI ASST 5 cut(s) 237, 399, 424, 453, 470
SfaNI GCATC 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 5 cut(s) 244, 317, 589, 639, 759
SsiI CCGC 4 cut(s) 5, 8, 203, 443
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 4 cut(s) 22, 111, 259, 485
TaiI ACGT 2 cut(s) 399, 424
TaqI TCGA 4 cut(s) 418, 453, 459, 510
TasI AATT 5 cut(s) 244, 317, 589, 639, 759
TatI WGTACW 2 cut(s) 370, 426
TauI GCSGC 1 cut(s) 8
TscAI CASTG 1 cut(s) 585
TseI GCWGC 2 cut(s) 440, 528
TspGWI ACGGA 3 cut(s) 155, 228, 615
TspRI CASTG 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 520
XapI RAATTY 2 cut(s) 244, 589
XceI RCATGY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.