Rorug03G0101100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000123
Physical Location & Seq
Forward (+)
7916585 .. 7919137
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0101100.1

Sequence Viewer

Length: 2334 bp
ATGTCGGAACCAAATCTAACCCCCCCCCCCCCCCCGCACCATCCAGCTTCTTCCCTACTCAACCCTTTTCCCTCCTCAACCCCAGCCCCTACGGTGTTCGACGACCACTTCCCTACTCAACCCTCTTCCCTCCTCAACCCCAGCCCCTACGGTGTTCGACGACCAAGCAGTGGCTGGGGCTCTCCTCCGGATCATCACCGCAGCGTTATAGTGCTCCTCCTCCTCCGCCGCTCGCGGAGCAGAGGATCGTGCCTCTCCCGGAGAAGGTCAAGAAGAGCCGCCGGGGACCGAGGTCCCAGAGCTCACAGTATCGCGGCGTCACGTTTTATCGGAGGATCGGGAGGGATTGGAAGCGATGGGTATCGAATTATAGGGATTGGAAGCGATGGGTATTGGATTCGAAGCGATGGAGCGATGGGTATTGGATTCGAAGTGAGACAATGGGTACTGGATCATCAATTAGGCGGTATAAATTCTGGGTTAATGGATACCCAGAATTGTACGAGCTTGGGCAATCAACTAATAAGTGATTCCGAGGACTTACAAGGTAAAGAGCAGTGTGATGATTCTCATTGTGAGCCTACTGATGATTTGCATGTAGTGAATGAAATTGAAAACAATGAAGAGGCAATTGAAGAGGTCATACTTGGAAAAGAGTTTATAGATGTTGAGAGTGCATATAAGTTCTATAAGAATTATGGTGGCAAACATGGATTCAATGTGAGGATAAGAAACAGTAAAAAAAACAATGAGAATTTTGTGACATGGGTGCGTTATTGTTGTGCAAAAGAAGGTTTTCGAGAAAAGGACAAGCGTCATACAAATGCATCTTATTCTCAACCAGTTACAAGATGTGGTTGTCAAGCGCATCTGACCATCCTACTGCAGAAGAATGGAAATTTCCAAGTTGTCTCATTTCAGACAAGTCATAATCATGCATTGATTAGTACTCCAATGAAGCATTTGCTTAAGGTCAATAGAAGTATATCTGAGGCACAAAAGGCACATGCAGATGATGCTGAACATTCTGGTTTCTCCATAAAAGCAACTGTGGAGTTGATGAGTAGAGAAGTAGGAGGGCCAGAGAACCTTGGATTTTCACAGAAGGATTACATGAATTACATACATAGAAAGCGAATGTCTAAAATGGAAAAGGGAGATGCAGGTGCTATATTGCAGTACTTTCAAAAGATGCAATCTGAGAATTCATCATATTTTTATTCAATCCAACTTGATGAGGATGACATTATCACAAACATATTTTGGGCTGATGCTCGATCGGTAAGTGATTATAGTCTGTTTGGAGATGTGCTTTGTTTTGATACGACATACAGGACAAATGAATATGGTCGACCCTTTGCACCGTTTGTGGGGGTTAATCATCATAAGCAAACAACATTGTTTGGTGCAGCTTTGTTATATGATGAAACAACCGAATCTTTTATCTGGTTATTTGAGACATTCCTCTCTGCTATGTCTGGTAAGCAACCAATGACCATTCTTACTGATCAGTCTGCTGCCATGGCTAGAGCAATAAAAGAAGTTTTTCCACAAGCTACTCATCGCTTATGTGTGTGGCATCTTTATCAAAATGCTGCTAAGAATCTTAGTCATGTCTTTCATGGATCTTCAGAATTTGTTGATGATTTTAGCAATTGCATGTATGACTATGAGTTTGAGCATGAGTGGCTATTAGCATGGAATGGACTTCTTGAGAAATATGGCCTCAAGGAAAACAAGTGGTTGAATAATTTATTTGAATTGAGGGAAAAATGGGCACTAGTGTATGGGAGACATACTTTCACTGCCGATATGAAAAGCACACAGCGAAGTGAATGCATGAATAATGTGCTTAAGAAATATTTGAAGCCAGAGCATAATCTTTTGCGGTTTTTCGAACATTATGAAAGAGTTTTGGCTGATCGAAGATATCAAGAGTTGATTGCTGAATATAAGATGATACAAACAACTCCTGTCTTAGCAGTAAGTGCACATATGTTGCAACATGGAGCAGAGGTCTATACTCCAAAGGTTTTCTTGCAGTTTCAGAAAGAATTTGTGAGAATTCATAATTATAGTACTTACAAGGTTGGTAAGTCTGGGATGACATCAGAGTATATAGTATCATATAGTTCTGAACATAATGAGCACTTGGTCAAATATGAAGCTTCAACACAAAATGTTAATTGTAGTTGTAAAAAGTTTACGTTTGTTGGGATTTTGTGTGCTCATGCACTAAAAGTTCTTGACAAGAAGAATGTGAAGAAGATTCCACCGCAATACATTTTAAAGCAATGGACAAGAGAAGCCAATAACCAGTCGCATGTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

777

Amino Acids

88.66

Weight (kDa)

7.86

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 228 - 315 1.2e-20 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 398 - 520 4.1e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 437 - 531 4.6e-32 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1154
Acc36I ACCTGC 1 cut(s) 1154
AccB7I CCANNNNNTGG 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 231
AccI GTMKAC 1 cut(s) 1351
AccII CGCG 2 cut(s) 235, 314
AccIII TCCGGA 1 cut(s) 187
AclWI GGATC 5 cut(s) 198, 253, 343, 459, 1633
AcsI RAATTY 7 cut(s) 472, 754, 898, 1204, 1634, 2054, 2064
AcuI CTGAAG 1 cut(s) 1614
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 5 cut(s) 447, 502, 949, 1181, 2080
AfiI CCNNNNNNNGG 3 cut(s) 170, 264, 1370
AflII CTTAAG 2 cut(s) 968, 1853
AgsI TTSAA 9 cut(s) 614, 635, 718, 1187, 1224, 1747, 1760, 1867, 2172
AhlI ACTAGT 1 cut(s) 1780
AluBI AGCT 6 cut(s) 47, 302, 507, 1412, 1556, 2168
AluI AGCT 6 cut(s) 47, 302, 507, 1412, 1556, 2168
Alw21I GWGCWC 5 cut(s) 216, 304, 1993, 2151, 2230
Alw26I GTCTC 4 cut(s) 430, 916, 1451, 1786
Alw44I GTGCAC 1 cut(s) 1989
AlwI GGATC 5 cut(s) 198, 253, 343, 459, 1633
AlwNI CAGNNNCTG 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 2 cut(s) 1079, 1723
ApaLI GTGCAC 1 cut(s) 1989
ApeKI GCWGC 4 cut(s) 201, 1409, 1517, 1595
ApoI RAATTY 7 cut(s) 472, 754, 898, 1204, 1634, 2054, 2064
ArsI GACNNNNNNTTYG 2 cut(s) 1658, 1690
Asp700I GAANNNNTTC 2 cut(s) 795, 1545
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 3 cut(s) 286, 293, 1079
AsuC2I CCSGG 2 cut(s) 259, 283
AsuHPI GGTGA 1 cut(s) 188
AsuII TTCGAA 3 cut(s) 400, 429, 1896
AvaII GGWCC 2 cut(s) 286, 293
BaeGI GKGCMC 2 cut(s) 1780, 1993
BanII GRGCYC 2 cut(s) 182, 304
BarI GAAGNNNNNNTAC 2 cut(s) 627, 659
Bbv12I GWGCWC 5 cut(s) 216, 304, 1993, 2151, 2230
BbvI GCAGC 4 cut(s) 213, 1421, 1504, 1582
BccI CCATC 6 cut(s) 48, 350, 380, 401, 409, 884
BcgI CGANNNNNNTGC 2 cut(s) 1818, 1852
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 1 cut(s) 1507
BcnI CCSGG 2 cut(s) 259, 283
BcoDI GTCTC 4 cut(s) 430, 916, 1451, 1786
BcuI ACTAGT 1 cut(s) 1780
BfaI CTAG 2 cut(s) 1527, 1781
BfmI CTRYAG 1 cut(s) 884
BfrI CTTAAG 2 cut(s) 968, 1853
BfuAI ACCTGC 1 cut(s) 1154
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 7 cut(s) 202, 229, 279, 315, 1410, 1518, 1596
BlsI GCNGC 7 cut(s) 203, 230, 280, 316, 1411, 1519, 1597
BmcAI AGTACT 3 cut(s) 949, 1181, 2080
Bme1390I CCNGG 2 cut(s) 259, 283
Bme18I GGWCC 2 cut(s) 286, 293
BmgT120I GGNCC 3 cut(s) 286, 293, 1079
BmiI GGNNCC 3 cut(s) 9, 287, 295
BmrFI CCNGG 2 cut(s) 259, 283
BmsI GCATC 7 cut(s) 836, 877, 1006, 1150, 1182, 1261, 1588
BoxI GACNNNNGTC 2 cut(s) 291, 813
Bpu14I TTCGAA 3 cut(s) 400, 429, 1896
BpuEI CTTGAG 2 cut(s) 1712, 1733
BpuMI CCSGG 2 cut(s) 259, 283
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 5 cut(s) 282, 289, 534, 1090, 1521
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 2001, 2031
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 264, 1370
Bse1I ACTGG 3 cut(s) 453, 842, 2317
Bse3DI GCAATG 1 cut(s) 2300
Bse8I GATNNNNATC 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 187
BseDI CCNNGG 5 cut(s) 282, 289, 534, 1090, 1521
BseGI GGATG 4 cut(s) 40, 876, 1246, 2109
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 3 cut(s) 170, 264, 1370
BseMI GCAATG 1 cut(s) 2300
BseMII CTCAG 2 cut(s) 981, 1191
BseNI ACTGG 3 cut(s) 453, 842, 2317
BseRI GAGGAG 6 cut(s) 64, 122, 174, 206, 209, 212
BseSI GKGCMC 2 cut(s) 1780, 1993
BseXI GCAGC 4 cut(s) 213, 1421, 1504, 1582
BseYI CCCAGC 3 cut(s) 82, 140, 174
BsgI GTGCAG 1 cut(s) 1428
Bsh1236I CGCG 2 cut(s) 235, 314
Bsh1285I CGRYCG 1 cut(s) 1280
BshFI GGCC 2 cut(s) 1081, 1725
BsiEI CGRYCG 1 cut(s) 1280
BsiHKAI GWGCWC 5 cut(s) 216, 304, 1993, 2151, 2230
BsiSI CCGG 3 cut(s) 188, 259, 282
BslFI GGGAC 2 cut(s) 279, 299
BslI CCNNNNNNNGG 3 cut(s) 170, 264, 1370
BsmAI GTCTC 4 cut(s) 430, 916, 1451, 1786
BsmFI GGGAC 2 cut(s) 279, 299
BsmI GAATGC 1 cut(s) 1841
BsnI GGCC 2 cut(s) 1081, 1725
Bsp119I TTCGAA 3 cut(s) 400, 429, 1896
Bsp1286I GDGCHC 7 cut(s) 182, 216, 304, 1780, 1993, 2151, 2230
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
Bsp19I CCATGG 1 cut(s) 1521
BspANI GGCC 2 cut(s) 1081, 1725
BspCNI CTCAG 2 cut(s) 982, 1192
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 2 cut(s) 235, 314
BspLI GGNNCC 3 cut(s) 9, 287, 295
BspMAI CTGCAG 1 cut(s) 888
BspMI ACCTGC 1 cut(s) 1154
BspPI GGATC 5 cut(s) 198, 253, 343, 459, 1633
BspQI GCTCTTC 1 cut(s) 268
BspT104I TTCGAA 3 cut(s) 400, 429, 1896
BspTI CTTAAG 2 cut(s) 968, 1853
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 2300
BsrI ACTGG 3 cut(s) 453, 842, 2317
BssECI CCNNGG 5 cut(s) 282, 289, 534, 1090, 1521
BssMI GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
BssNI GRCGYC 1 cut(s) 317
BssT1I CCWWGG 2 cut(s) 1090, 1521
Bst4CI ACNGT 6 cut(s) 94, 152, 308, 737, 1051, 1365
Bst6I CTCTTC 4 cut(s) 130, 268, 618, 630
BstACI GRCGYC 1 cut(s) 317
BstAFI CTTAAG 2 cut(s) 968, 1853
BstAPI GCANNNNNTGC 2 cut(s) 1016, 1988
BstBI TTCGAA 3 cut(s) 400, 429, 1896
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 5 cut(s) 990, 1200, 1599, 1607, 1978
BstDSI CCRYGG 1 cut(s) 1521
BstF5I GGATG 4 cut(s) 40, 876, 1246, 2109
BstFNI CGCG 2 cut(s) 235, 314
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 8 cut(s) 193, 248, 338, 454, 1280, 1510, 1628, 1924
BstMAI GTCTC 4 cut(s) 430, 916, 1451, 1786
BstMBI GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
BstMCI CGRYCG 1 cut(s) 1280
BstMWI GCNNNNNNNGC 6 cut(s) 237, 1001, 1016, 1523, 1687, 1988
BstNSI RCATGY 4 cut(s) 599, 1010, 1663, 2327
BstPAI GACNNNNGTC 2 cut(s) 291, 813
BstSCI CCNGG 2 cut(s) 257, 281
BstSFI CTRYAG 1 cut(s) 884
BstSLI GKGCMC 2 cut(s) 1780, 1993
BstUI CGCG 2 cut(s) 235, 314
BstV1I GCAGC 4 cut(s) 213, 1421, 1504, 1582
BstX2I RGATCY 1 cut(s) 1625
BstYI RGATCY 1 cut(s) 1625
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 2 cut(s) 1081, 1725
BtgI CCRYGG 1 cut(s) 1521
BtgZI GCGATG 5 cut(s) 369, 399, 420, 428, 1547
BtsCI GGATG 4 cut(s) 40, 876, 1246, 2109
BtsI GCAGTG 3 cut(s) 175, 563, 1803
BtsIMutI CAGTG 3 cut(s) 175, 563, 1803
BveI ACCTGC 1 cut(s) 1154
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 174
CfoI GCGC 1 cut(s) 868
Cfr13I GGNCC 3 cut(s) 286, 293, 1079
CseI GACGC 2 cut(s) 306, 803
Csp6I GTAC 5 cut(s) 446, 501, 948, 1180, 2079
CviQI GTAC 5 cut(s) 446, 501, 948, 1180, 2079
DdeI CTNAG 5 cut(s) 990, 1200, 1599, 1607, 1978
DpnI GATC 8 cut(s) 192, 247, 337, 453, 1279, 1509, 1627, 1923
DpnII GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
DraI TTTAAA 1 cut(s) 2289
Eam1104I CTCTTC 4 cut(s) 130, 268, 618, 630
EarI CTCTTC 4 cut(s) 130, 268, 618, 630
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 1090, 1521
Eco24I GRGCYC 2 cut(s) 182, 304
Eco32I GATATC 1 cut(s) 1931
Eco47I GGWCC 2 cut(s) 286, 293
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 1614
EcoICRI GAGCTC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 293
EcoRI GAATTC 2 cut(s) 1204, 2064
EcoRV GATATC 1 cut(s) 1931
EcoT14I CCWWGG 2 cut(s) 1090, 1521
EcoT22I ATGCAT 3 cut(s) 829, 940, 1841
EcoT38I GRGCYC 2 cut(s) 182, 304
ErhI CCWWGG 2 cut(s) 1090, 1521
FalI AAGNNNNNCTT 2 cut(s) 2021, 2053
FaqI GGGAC 2 cut(s) 279, 299
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 1995
FbaI TGATCA 1 cut(s) 1507
FblI GTMKAC 1 cut(s) 1351
Fnu4HI GCNGC 7 cut(s) 202, 229, 279, 315, 1410, 1518, 1596
FokI GGATG 4 cut(s) 27, 863, 1253, 2116
FriOI GRGCYC 2 cut(s) 182, 304
Fsp4HI GCNGC 7 cut(s) 202, 229, 279, 315, 1410, 1518, 1596
FspBI CTAG 2 cut(s) 1527, 1781
GlaI GCGC 1 cut(s) 867
GluI GCNGC 7 cut(s) 202, 229, 279, 315, 1410, 1518, 1596
GsaI CCCAGC 3 cut(s) 86, 144, 178
HaeIII GGCC 2 cut(s) 1081, 1725
HapII CCGG 3 cut(s) 188, 259, 282
HgaI GACGC 2 cut(s) 306, 803
HhaI GCGC 1 cut(s) 868
Hin1I GRCGYC 1 cut(s) 317
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HincII GTYRAC 1 cut(s) 1352
HindII GTYRAC 1 cut(s) 1352
HindIII AAGCTT 1 cut(s) 2166
HinfI GANTC 8 cut(s) 397, 426, 530, 566, 714, 1436, 1603, 2269
HpaII CCGG 3 cut(s) 188, 259, 282
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 3 cut(s) 1352, 1991, 2205
Hpy188III TCNNGA 7 cut(s) 188, 270, 339, 800, 1712, 1934, 2246
Hpy8I GTNNAC 3 cut(s) 1352, 1991, 2205
Hpy99I CGWCG 2 cut(s) 104, 162
HpyAV CCTTC 3 cut(s) 258, 785, 1099
HpyCH4III ACNGT 6 cut(s) 94, 152, 308, 737, 1051, 1365
HpyCH4IV ACGT 2 cut(s) 322, 2207
HpyF10VI GCNNNNNNNGC 6 cut(s) 237, 1001, 1016, 1523, 1687, 1988
HpyF3I CTNAG 5 cut(s) 990, 1200, 1599, 1607, 1978
HpySE526I ACGT 2 cut(s) 322, 2207
Hsp92I GRCGYC 1 cut(s) 317
HspAI GCGC 1 cut(s) 866
Kpn2I TCCGGA 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 1507
Kzo9I GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
LguI GCTCTTC 1 cut(s) 268
LmnI GCTCC 4 cut(s) 219, 237, 410, 2009
Lsp1109I GCAGC 4 cut(s) 213, 1421, 1504, 1582
LweI GCATC 7 cut(s) 836, 877, 1006, 1150, 1182, 1261, 1588
MaeI CTAG 2 cut(s) 1527, 1781
MaeII ACGT 2 cut(s) 322, 2207
MaeIII GTNAC 3 cut(s) 318, 760, 844
MalI GATC 8 cut(s) 192, 247, 337, 453, 1279, 1509, 1627, 1923
MbiI CCGCTC 1 cut(s) 231
MboI GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
MfeI CAATTG 2 cut(s) 630, 1654
MflI RGATCY 1 cut(s) 1625
MhlI GDGCHC 7 cut(s) 182, 216, 304, 1780, 1993, 2151, 2230
MmeI TCCRAC 1 cut(s) 1252
Mph1103I ATGCAT 3 cut(s) 829, 940, 1841
MroI TCCGGA 1 cut(s) 187
MroXI GAANNNNTTC 2 cut(s) 795, 1545
MseI TTAA 6 cut(s) 482, 969, 1377, 1854, 2184, 2288
MslI CAYNNNNRTG 3 cut(s) 822, 933, 1011
MspCI CTTAAG 2 cut(s) 968, 1853
MspI CCGG 3 cut(s) 188, 259, 282
MspR9I CCNGG 2 cut(s) 259, 283
MunI CAATTG 2 cut(s) 630, 1654
Mva1269I GAATGC 1 cut(s) 1841
MvnI CGCG 2 cut(s) 235, 314
MwoI GCNNNNNNNGC 6 cut(s) 237, 1001, 1016, 1523, 1687, 1988
NciI CCSGG 2 cut(s) 259, 283
NcoI CCATGG 1 cut(s) 1521
NdeI CATATG 1 cut(s) 1995
NdeII GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
NlaIV GGNNCC 3 cut(s) 9, 287, 295
NmuCI GTSAC 2 cut(s) 318, 760
NsiI ATGCAT 3 cut(s) 829, 940, 1841
NspI RCATGY 4 cut(s) 599, 1010, 1663, 2327
NspV TTCGAA 3 cut(s) 400, 429, 1896
PaqCI CACCTGC 1 cut(s) 1154
PciSI GCTCTTC 1 cut(s) 268
PctI GAATGC 1 cut(s) 1841
PdmI GAANNNNTTC 2 cut(s) 795, 1545
PfeI GAWTC 8 cut(s) 397, 426, 530, 566, 714, 1436, 1603, 2269
PflMI CCANNNNNTGG 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 257
PkrI GCNGC 7 cut(s) 203, 230, 280, 316, 1411, 1519, 1597
Ple19I CGATCG 1 cut(s) 1280
PpuMI RGGWCCY 1 cut(s) 293
PshAI GACNNNNGTC 2 cut(s) 291, 813
Psp124BI GAGCTC 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 293
PspFI CCCAGC 3 cut(s) 82, 140, 174
PspN4I GGNNCC 3 cut(s) 9, 287, 295
PspPI GGNCC 3 cut(s) 286, 293, 1079
PspPPI RGGWCCY 1 cut(s) 293
PstI CTGCAG 1 cut(s) 888
PstNI CAGNNNCTG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 1625
PvuI CGATCG 1 cut(s) 1280
RsaI GTAC 5 cut(s) 447, 502, 949, 1181, 2080
RsaNI GTAC 5 cut(s) 446, 501, 948, 1180, 2079
RseI CAYNNNNRTG 3 cut(s) 822, 933, 1011
SacI GAGCTC 1 cut(s) 304
SalI GTCGAC 1 cut(s) 1350
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 6 cut(s) 482, 969, 1377, 1854, 2184, 2288
SatI GCNGC 7 cut(s) 202, 229, 279, 315, 1410, 1518, 1596
Sau3AI GATC 8 cut(s) 190, 245, 335, 451, 1277, 1507, 1625, 1921
Sau96I GGNCC 3 cut(s) 286, 293, 1079
ScaI AGTACT 3 cut(s) 949, 1181, 2080
ScrFI CCNGG 2 cut(s) 259, 283
SduI GDGCHC 7 cut(s) 182, 216, 304, 1780, 1993, 2151, 2230
SfaNI GCATC 7 cut(s) 836, 877, 1006, 1150, 1182, 1261, 1588
SfcI CTRYAG 1 cut(s) 884
SfuI TTCGAA 3 cut(s) 400, 429, 1896
SinI GGWCC 2 cut(s) 286, 293
SmiMI CAYNNNNRTG 3 cut(s) 822, 933, 1011
SmlI CTYRAG 4 cut(s) 968, 1712, 1727, 1853
SmoI CTYRAG 4 cut(s) 968, 1712, 1727, 1853
SpeI ACTAGT 1 cut(s) 1780
SspI AATATT 1 cut(s) 1862
SspMI CTAG 2 cut(s) 1527, 1781
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 257, 281
StyI CCWWGG 2 cut(s) 1090, 1521
TaaI ACNGT 6 cut(s) 94, 152, 308, 737, 1051, 1365
TaiI ACGT 2 cut(s) 325, 2210
TaqII GACCGA 1 cut(s) 303
TatI WGTACW 3 cut(s) 947, 1179, 2078
TauI GCSGC 3 cut(s) 231, 281, 317
TfiI GAWTC 8 cut(s) 397, 426, 530, 566, 714, 1436, 1603, 2269
Tru1I TTAA 6 cut(s) 482, 969, 1377, 1854, 2184, 2288
Tru9I TTAA 6 cut(s) 482, 969, 1377, 1854, 2184, 2288
TscAI CASTG 3 cut(s) 175, 563, 1810
TseFI GTSAC 2 cut(s) 318, 760
TseI GCWGC 4 cut(s) 201, 1409, 1517, 1595
Tsp45I GTSAC 2 cut(s) 318, 760
TspRI CASTG 3 cut(s) 175, 563, 1810
Van91I CCANNNNNTGG 1 cut(s) 170
Vha464I CTTAAG 2 cut(s) 968, 1853
VneI GTGCAC 1 cut(s) 1989
VpaK11BI GGWCC 2 cut(s) 286, 293
XapI RAATTY 7 cut(s) 472, 754, 898, 1204, 1634, 2054, 2064
XceI RCATGY 4 cut(s) 599, 1010, 1663, 2327
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 1351
XmnI GAANNNNTTC 2 cut(s) 795, 1545
XspI CTAG 2 cut(s) 1527, 1781
ZrmI AGTACT 3 cut(s) 949, 1181, 2080
Zsp2I ATGCAT 3 cut(s) 829, 940, 1841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.