Rmu_sc0013102.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013102.1
OG0000123
Physical Location & Seq
Reverse (-)
12272 .. 13570
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013102.1_g000007.1.cds

Sequence Viewer

Length: 1233 bp
atggtggaggagaacatggtggctccttctgcactttctgaggaggtcattgtgtgccttgttggaggagaggatgcaatccatgattcatttttctacctttgtgggttgaaggagagagttctgatccggcaggaggaggaggatatctttgtcttccaattcaaggatagagaggtgaagaatcggattctctccggcagtccatggttctacaataaatctatgttgctgttggtagactatgacagtgtttcagctctcgaggcagcttcgctgcatctcctggaggtttgggtggcggtgaaggggttgcgcattgctatgcacaacgagaaggccttaaccctaattggacgagcgttgggttccttcgttaaggttgatcagggggcggtgcaacgaaaggatcctattcaaaggatccgtgtggtacaggatgtccggcggaggatttgggcttggcggacctttcaattttctctgacggtctcggtgttggtggaactccagtatgaaaaatgtcacgggttgtgttcagcttgtggcttctttagtcatggagggggtatatgtgatggcagattggaggcgaaggctcatgtagcactggttctagcggggtcggaccactcggtggaagcaaacccaagtgggttggcggtgtcggaagcggcggtttctgggttggttgttgggtcagagatgtcggcgacggtgggactggatgcgccggaggtttctggggtggcggaaatggctggaacgttggtgttgggatcgggttcgctggcagcggggcgtgcagagctcgttcaggaaaaatcggcgggaaaccctaattttgaattagggttgaccgctgggttgactgggactagtcagcatagccttgggcccagtctgcttgggattgggcctggtctgcatgggactaggccggatttctttgctgatggggccaatataaagggccttgctgttgggataaattcagaaaaacatcttatcttgggtgtgaaaaagaagagctttaagcctgggttggctttcatacctccggaatttcaccttggtgaattggtggaggttccggtttccctggggacagctccaaagaaaaaaggttgtcctgttggacgaaggaataagcgtactttaaaagatgaaggtagcaatgctggtacaaatattagctccaactcgccagggaaggagctggctattgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

410

Amino Acids

43.65

Weight (kDa)

6.43

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 1060
AclI AACGTT 1 cut(s) 767
AclWI GGATC 6 cut(s) 121, 404, 417, 418, 431, 787
AcsI RAATTY 2 cut(s) 991, 1064
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 3 cut(s) 435, 1156, 1186
AfiI CCNNNNNNNGG 3 cut(s) 136, 166, 637
AgsI TTSAA 5 cut(s) 112, 166, 419, 476, 848
AhlI ACTAGT 1 cut(s) 878
AjnI CCWGG 5 cut(s) 285, 919, 1039, 1101, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 1056, 1088
AleI CACNNNNGTG 1 cut(s) 1074
AluBI AGCT 8 cut(s) 260, 272, 542, 811, 1032, 1112, 1197, 1219
AluI AGCT 8 cut(s) 260, 272, 542, 811, 1032, 1112, 1197, 1219
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 6 cut(s) 121, 404, 417, 418, 431, 787
Ama87I CYCGRG 1 cut(s) 263
Aor13HI TCCGGA 1 cut(s) 1060
AoxI GGCC 6 cut(s) 339, 896, 917, 938, 960, 973
ApaI GGGCCC 1 cut(s) 900
ApeKI GCWGC 3 cut(s) 269, 277, 794
ApoI RAATTY 2 cut(s) 991, 1064
AspLEI GCGC 2 cut(s) 318, 733
AspS9I GGNCC 7 cut(s) 468, 628, 896, 897, 917, 960, 973
AsuHPI GGTGA 4 cut(s) 190, 316, 1061, 1088
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 2 cut(s) 468, 628
BaeGI GKGCMC 1 cut(s) 900
BamHI GGATCC 2 cut(s) 409, 423
BanII GRGCYC 2 cut(s) 813, 900
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 3 cut(s) 264, 281, 806
BccI CCATC 2 cut(s) 572, 950
BciT130I CCWGG 5 cut(s) 287, 921, 1041, 1103, 1209
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 496
BcuI ACTAGT 1 cut(s) 878
BfaI CTAG 3 cut(s) 617, 879, 936
BisI GCNGC 4 cut(s) 270, 278, 675, 795
BlsI GCNGC 4 cut(s) 271, 279, 676, 796
Bme1390I CCNGG 5 cut(s) 287, 921, 1041, 1103, 1209
Bme18I GGWCC 2 cut(s) 468, 628
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 7 cut(s) 468, 628, 896, 897, 917, 960, 973
BmiI GGNNCC 7 cut(s) 24, 370, 411, 425, 898, 961, 1092
BmrFI CCNGG 5 cut(s) 287, 921, 1041, 1103, 1209
BmrI ACTGGG 2 cut(s) 882, 894
BmsI GCATC 3 cut(s) 64, 289, 718
BmuI ACTGGG 2 cut(s) 882, 894
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 2 cut(s) 308, 494
BsaI GGTCTC 1 cut(s) 496
BsaJI CCNNGG 7 cut(s) 206, 892, 1040, 1072, 1101, 1102, 1208
BsaWI WCCGGW 2 cut(s) 1060, 1093
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 166, 637
Bse1I ACTGG 5 cut(s) 511, 615, 729, 877, 900
Bse3DI GCAATG 2 cut(s) 318, 1183
BseAI TCCGGA 1 cut(s) 1060
BseBI CCWGG 5 cut(s) 287, 921, 1041, 1103, 1209
BseDI CCNNGG 7 cut(s) 206, 892, 1040, 1072, 1101, 1102, 1208
BseGI GGATG 3 cut(s) 79, 445, 733
BseLI CCNNNNNNNGG 3 cut(s) 136, 166, 637
BseMI GCAATG 2 cut(s) 318, 1183
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 5 cut(s) 511, 615, 729, 877, 900
BseRI GAGGAG 5 cut(s) 23, 56, 81, 152, 155
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 3 cut(s) 264, 281, 806
BseYI CCCAGC 1 cut(s) 863
BsgI GTGCAG 2 cut(s) 15, 825
BshFI GGCC 6 cut(s) 341, 898, 919, 940, 962, 975
BsiHKAI GWGCWC 1 cut(s) 813
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 7 cut(s) 130, 198, 445, 734, 941, 1061, 1094
BslFI GGGAC 4 cut(s) 735, 889, 946, 1120
BslI CCNNNNNNNGG 3 cut(s) 136, 166, 637
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 4 cut(s) 735, 889, 946, 1120
BsnI GGCC 6 cut(s) 341, 898, 919, 940, 962, 975
Bso31I GGTCTC 1 cut(s) 496
BsoBI CYCGRG 1 cut(s) 263
Bsp120I GGGCCC 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 813, 900
Bsp13I TCCGGA 1 cut(s) 1060
Bsp143I GATC 5 cut(s) 126, 385, 409, 423, 779
Bsp19I CCATGG 1 cut(s) 206
BspANI GGCC 6 cut(s) 341, 898, 919, 940, 962, 975
BspCNI CTCAG 1 cut(s) 31
BspEI TCCGGA 1 cut(s) 1060
BspLI GGNNCC 7 cut(s) 24, 370, 411, 425, 898, 961, 1092
BspPI GGATC 6 cut(s) 121, 404, 417, 418, 431, 787
BspQI GCTCTTC 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 318, 1183
BsrI ACTGG 5 cut(s) 511, 615, 729, 877, 900
BssECI CCNNGG 7 cut(s) 206, 892, 1040, 1072, 1101, 1102, 1208
BssMI GATC 5 cut(s) 126, 385, 409, 423, 779
BssT1I CCWWGG 3 cut(s) 206, 892, 1072
Bst2UI CCWGG 5 cut(s) 287, 921, 1041, 1103, 1209
Bst4CI ACNGT 3 cut(s) 251, 490, 718
Bst6I CTCTTC 1 cut(s) 1022
BstC8I GCNNGC 3 cut(s) 792, 804, 1221
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 3 cut(s) 79, 445, 733
BstHHI GCGC 2 cut(s) 318, 733
BstKTI GATC 5 cut(s) 129, 388, 412, 426, 782
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 5 cut(s) 126, 385, 409, 423, 779
BstMWI GCNNNNNNNGC 9 cut(s) 29, 266, 605, 758, 803, 808, 904, 925, 959
BstNI CCWGG 5 cut(s) 287, 921, 1041, 1103, 1209
BstSCI CCNGG 5 cut(s) 285, 919, 1039, 1101, 1207
BstSLI GKGCMC 1 cut(s) 900
BstV1I GCAGC 3 cut(s) 264, 281, 806
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 409, 423
BstYI RGATCY 2 cut(s) 409, 423
BsuRI GGCC 6 cut(s) 341, 898, 919, 940, 962, 975
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 3 cut(s) 79, 445, 733
BtsIMutI CAGTG 2 cut(s) 256, 608
Cac8I GCNNGC 3 cut(s) 792, 804, 1221
CfoI GCGC 2 cut(s) 318, 733
Cfr13I GGNCC 7 cut(s) 468, 628, 896, 897, 917, 960, 973
Csp6I GTAC 3 cut(s) 434, 1155, 1185
CviAII CATG 6 cut(s) 16, 83, 207, 560, 602, 929
CviQI GTAC 3 cut(s) 434, 1155, 1185
DdeI CTNAG 1 cut(s) 39
DpnI GATC 5 cut(s) 128, 387, 411, 425, 781
DpnII GATC 5 cut(s) 126, 385, 409, 423, 779
DraI TTTAAA 1 cut(s) 1161
DraIII CACNNNGTG 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 1022
EarI CTCTTC 1 cut(s) 1022
EciI GGCGGA 3 cut(s) 463, 481, 767
Ecl136II GAGCTC 1 cut(s) 811
Eco130I CCWWGG 3 cut(s) 206, 892, 1072
Eco147I AGGCCT 1 cut(s) 341
Eco24I GRGCYC 2 cut(s) 813, 900
Eco31I GGTCTC 1 cut(s) 496
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 468, 628
Eco53kI GAGCTC 1 cut(s) 811
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 973
EcoRII CCWGG 5 cut(s) 285, 919, 1039, 1101, 1207
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 3 cut(s) 206, 892, 1072
EcoT38I GRGCYC 2 cut(s) 813, 900
ErhI CCWWGG 3 cut(s) 206, 892, 1072
FaeI CATG 6 cut(s) 19, 86, 210, 563, 605, 932
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FaqI GGGAC 4 cut(s) 735, 889, 946, 1120
FatI CATG 6 cut(s) 15, 82, 206, 559, 601, 928
FauI CCCGC 3 cut(s) 613, 790, 823
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 4 cut(s) 270, 278, 675, 795
FokI GGATG 3 cut(s) 86, 452, 740
FriOI GRGCYC 2 cut(s) 813, 900
Fsp4HI GCNGC 4 cut(s) 270, 278, 675, 795
FspBI CTAG 3 cut(s) 617, 879, 936
FspI TGCGCA 1 cut(s) 317
GlaI GCGC 2 cut(s) 317, 732
GluI GCNGC 4 cut(s) 270, 278, 675, 795
GsaI CCCAGC 1 cut(s) 867
GsuI CTGGAG 2 cut(s) 308, 494
HaeIII GGCC 6 cut(s) 341, 898, 919, 940, 962, 975
HapII CCGG 7 cut(s) 130, 198, 445, 734, 941, 1061, 1094
HhaI GCGC 2 cut(s) 318, 733
Hin1II CATG 6 cut(s) 19, 86, 210, 563, 605, 932
Hin6I GCGC 2 cut(s) 316, 731
HinP1I GCGC 2 cut(s) 316, 731
HincII GTYRAC 2 cut(s) 858, 870
HindII GTYRAC 2 cut(s) 858, 870
HinfI GANTC 3 cut(s) 86, 184, 190
HpaII CCGG 7 cut(s) 130, 198, 445, 734, 941, 1061, 1094
HphI GGTGA 4 cut(s) 190, 316, 1061, 1088
Hpy166II GTNNAC 3 cut(s) 241, 858, 870
Hpy188I TCNGA 8 cut(s) 40, 126, 189, 486, 628, 670, 703, 997
Hpy188III TCNNGA 3 cut(s) 263, 818, 1061
Hpy8I GTNNAC 3 cut(s) 241, 858, 870
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 9 cut(s) 36, 106, 301, 331, 382, 589, 1137, 1163, 1207
HpyCH4III ACNGT 3 cut(s) 251, 490, 718
HpyCH4IV ACGT 1 cut(s) 767
HpyCH4V TGCA 7 cut(s) 32, 77, 280, 328, 400, 806, 928
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 266, 605, 758, 803, 808, 904, 925, 959
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 767
Hsp92II CATG 6 cut(s) 19, 86, 210, 563, 605, 932
HspAI GCGC 2 cut(s) 316, 731
Kpn2I TCCGGA 1 cut(s) 1060
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 126, 385, 409, 423, 779
LguI GCTCTTC 1 cut(s) 1022
LmnI GCTCC 4 cut(s) 28, 1117, 1202, 1216
Lsp1109I GCAGC 3 cut(s) 264, 281, 806
LweI GCATC 3 cut(s) 64, 289, 718
MaeI CTAG 3 cut(s) 617, 879, 936
MaeII ACGT 1 cut(s) 767
MaeIII GTNAC 1 cut(s) 524
MalI GATC 5 cut(s) 128, 387, 411, 425, 781
MboI GATC 5 cut(s) 126, 385, 409, 423, 779
MboII GAAGA 3 cut(s) 148, 193, 1039
MflI RGATCY 2 cut(s) 409, 423
MhlI GDGCHC 2 cut(s) 813, 900
MluCI AATT 8 cut(s) 161, 351, 476, 841, 848, 991, 1064, 1079
MmeI TCCRAC 5 cut(s) 43, 606, 648, 1117, 1224
MroI TCCGGA 1 cut(s) 1060
MseI TTAA 5 cut(s) 344, 378, 1035, 1160, 1231
MslI CAYNNNNRTG 2 cut(s) 323, 1074
MspA1I CMGCKG 2 cut(s) 797, 863
MspI CCGG 7 cut(s) 130, 198, 445, 734, 941, 1061, 1094
MspR9I CCNGG 5 cut(s) 287, 921, 1041, 1103, 1209
MvaI CCWGG 5 cut(s) 287, 921, 1041, 1103, 1209
MwoI GCNNNNNNNGC 9 cut(s) 29, 266, 605, 758, 803, 808, 904, 925, 959
NcoI CCATGG 1 cut(s) 206
NdeII GATC 5 cut(s) 126, 385, 409, 423, 779
NlaIII CATG 6 cut(s) 19, 86, 210, 563, 605, 932
NlaIV GGNNCC 7 cut(s) 24, 370, 411, 425, 898, 961, 1092
NmuCI GTSAC 1 cut(s) 524
NsbI TGCGCA 1 cut(s) 317
OliI CACNNNNGTG 1 cut(s) 1074
PaeR7I CTCGAG 1 cut(s) 263
PasI CCCWGGG 1 cut(s) 1102
PceI AGGCCT 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 1022
PfeI GAWTC 3 cut(s) 86, 184, 190
PflMI CCANNNNNTGG 1 cut(s) 637
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 4 cut(s) 271, 279, 676, 796
Psp124BI GAGCTC 1 cut(s) 813
Psp1406I AACGTT 1 cut(s) 767
Psp6I CCWGG 5 cut(s) 285, 919, 1039, 1101, 1207
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 5 cut(s) 285, 919, 1039, 1101, 1207
PspN4I GGNNCC 7 cut(s) 24, 370, 411, 425, 898, 961, 1092
PspOMI GGGCCC 1 cut(s) 896
PspPI GGNCC 7 cut(s) 468, 628, 896, 897, 917, 960, 973
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PsuI RGATCY 2 cut(s) 409, 423
RsaI GTAC 3 cut(s) 435, 1156, 1186
RsaNI GTAC 3 cut(s) 434, 1155, 1185
RseI CAYNNNNRTG 2 cut(s) 323, 1074
SacI GAGCTC 1 cut(s) 813
SapI GCTCTTC 1 cut(s) 1022
SaqAI TTAA 5 cut(s) 344, 378, 1035, 1160, 1231
SatI GCNGC 4 cut(s) 270, 278, 675, 795
Sau3AI GATC 5 cut(s) 126, 385, 409, 423, 779
Sau96I GGNCC 7 cut(s) 468, 628, 896, 897, 917, 960, 973
ScrFI CCNGG 5 cut(s) 287, 921, 1041, 1103, 1209
SduI GDGCHC 2 cut(s) 813, 900
SfaNI GCATC 3 cut(s) 64, 289, 718
Sfr274I CTCGAG 1 cut(s) 263
SinI GGWCC 2 cut(s) 468, 628
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 323, 1074
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 878
Sse9I AATT 8 cut(s) 161, 351, 476, 841, 848, 991, 1064, 1079
SseBI AGGCCT 1 cut(s) 341
SspI AATATT 1 cut(s) 1192
SspMI CTAG 3 cut(s) 617, 879, 936
SstI GAGCTC 1 cut(s) 813
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 5 cut(s) 285, 919, 1039, 1101, 1207
StyI CCWWGG 3 cut(s) 206, 892, 1072
TaaI ACNGT 3 cut(s) 251, 490, 718
TaiI ACGT 1 cut(s) 770
TaqI TCGA 1 cut(s) 264
TasI AATT 8 cut(s) 161, 351, 476, 841, 848, 991, 1064, 1079
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 3 cut(s) 86, 184, 190
Tru1I TTAA 5 cut(s) 344, 378, 1035, 1160, 1231
Tru9I TTAA 5 cut(s) 344, 378, 1035, 1160, 1231
TscAI CASTG 2 cut(s) 256, 615
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 3 cut(s) 269, 277, 794
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 4 cut(s) 78, 531, 1042, 1182
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 256, 615
Van91I CCANNNNNTGG 1 cut(s) 637
VpaK11BI GGWCC 2 cut(s) 468, 628
XapI RAATTY 2 cut(s) 991, 1064
XhoI CTCGAG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 3 cut(s) 617, 879, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.