Rmu_sc0004975.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004975.1
OG0000123
Physical Location & Seq
Reverse (-)
42363 .. 43535
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004975.1_g000008.1.cds

Sequence Viewer

Length: 1173 bp
atgattcttttttgtatctttgtggccgacttctgtccaagaaggcggtggtgcttttgttcggcggcgatctccaatgtttggggattgaaggagagggttttgatccggcaggaggaggaggacatctttgtcttccaatttaaggagatggaggtgaagagtcgggttctctcggggggtccttggttctataacaactccatgctgttgctggctgattacgacggagtttctgacctagaagcagcgcagctgcatctccttaaggggtgggtggctgtgaaagggttgcggatagcgatgctgaatgagaaagccctaaccctaatcggacgagcacttggggtctttgttcaactttatcagggggcggtgcagagaaaggatcatgtccagaggatccgtgtgattcatgatgttcaccggacgatttgggcgcgacggaggtttgacttttcgtcggttgtttcggtgatggtagagttgcaatatgaaaaatgccatgggttgtgtgtggcttgtggtctttttggccatgggggaggtccgtgtgacggaaggttggctgctgaggcgctcgggctagtgatgccgagctgtgaggtatcgaacagggagggcctgggctcggtgtccagaccgcgggattgttcggtggccgctgtcatggggccggaggtgttttctccggtgtcagaggttttgggtttggtggtagaggcgactggtgagcaggtggtgaaggtgggcggcttagcgttggaagttgcagacgctgcatctgggctggctcctccagaaaaaccgacgggaaaccctaactttgaattagggttgatcgcaggtttgattgggtctgttgggcctggggagcaaagtttgactgggtccaagtctactgggccttctactgctgctagaagaagtccaaacttgggcttaggtgtgagaaaaaaggtttttaaacctagtctggcaattatccctccggaattccaactgggtgaactagtggaggttccaatttcgatgggagtagctccaaagaagaagggtcgtccacctggacgccgggctaagcagttacaatctccaaagaaagtggaaggtaatgatgtcggtgtggatttatgctccaactcgaatgggaaggagctacttattgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

390

Amino Acids

42.07

Weight (kDa)

8.83

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 2 cut(s) 727, 836
AccB7I CCANNNNNTGG 1 cut(s) 81
AccI GTMKAC 1 cut(s) 899
AccII CGCG 2 cut(s) 442, 646
AccIII TCCGGA 1 cut(s) 991
AciI CCGC 8 cut(s) 46, 65, 295, 374, 644, 646, 663, 753
AclWI GGATC 4 cut(s) 100, 396, 397, 410
AcoI YGGCCR 3 cut(s) 24, 535, 660
AcsI RAATTY 1 cut(s) 995
AcyI GRCGYC 1 cut(s) 1072
AfiI CCNNNNNNNGG 7 cut(s) 81, 115, 145, 557, 631, 645, 938
AflII CTTAAG 1 cut(s) 266
AgsI TTSAA 3 cut(s) 91, 359, 830
AhdI GACNNNNNGTC 1 cut(s) 460
AhlI ACTAGT 1 cut(s) 1012
AjnI CCWGG 3 cut(s) 624, 868, 1066
AluBI AGCT 4 cut(s) 256, 600, 1043, 1159
AluI AGCT 4 cut(s) 256, 600, 1043, 1159
Alw21I GWGCWC 1 cut(s) 343
AlwI GGATC 4 cut(s) 100, 396, 397, 410
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 2 cut(s) 175, 581
Aor13HI TCCGGA 1 cut(s) 991
AoxI GGCC 7 cut(s) 24, 535, 622, 660, 674, 866, 905
ApeKI GCWGC 6 cut(s) 248, 253, 256, 569, 779, 917
ApoI RAATTY 1 cut(s) 995
AspLEI GCGC 3 cut(s) 253, 442, 580
AspS9I GGNCC 7 cut(s) 182, 548, 622, 674, 866, 891, 905
AsuC2I CCSGG 1 cut(s) 1076
AsuHPI GGTGA 6 cut(s) 169, 416, 487, 743, 754, 1019
AvaI CYCGRG 2 cut(s) 175, 581
AvaII GGWCC 3 cut(s) 182, 548, 891
BalI TGGCCA 1 cut(s) 537
BamHI GGATCC 1 cut(s) 402
BanII GRGCYC 1 cut(s) 632
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 343
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 6 cut(s) 243, 260, 265, 556, 766, 904
BccI CCATC 3 cut(s) 145, 472, 1027
BciT130I CCWGG 3 cut(s) 626, 870, 1068
BcnI CCSGG 1 cut(s) 1076
BcuI ACTAGT 1 cut(s) 1012
BfaI CTAG 5 cut(s) 242, 587, 921, 972, 1013
BfoI RGCGCY 1 cut(s) 581
BfrI CTTAAG 1 cut(s) 266
BfuAI ACCTGC 2 cut(s) 727, 836
BisI GCNGC 9 cut(s) 66, 249, 254, 257, 570, 663, 754, 780, 918
BlpI GCTNAGC 2 cut(s) 757, 1080
BlsI GCNGC 9 cut(s) 67, 250, 255, 258, 571, 664, 755, 781, 919
Bme1390I CCNGG 4 cut(s) 626, 870, 1068, 1076
Bme18I GGWCC 3 cut(s) 182, 548, 891
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 2 cut(s) 175, 581
BmgT120I GGNCC 7 cut(s) 182, 548, 622, 674, 866, 891, 905
BmiI GGNNCC 6 cut(s) 183, 404, 675, 795, 892, 1023
BmrFI CCNGG 4 cut(s) 626, 870, 1068, 1076
BmrI ACTGGG 3 cut(s) 897, 912, 1013
BmsI GCATC 4 cut(s) 268, 294, 582, 791
BmuI ACTGGG 3 cut(s) 897, 912, 1013
BoxI GACNNNNGTC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 783
Bpu10I CCTNAGC 2 cut(s) 573, 943
Bpu1102I GCTNAGC 2 cut(s) 757, 1080
BpuMI CCSGG 1 cut(s) 1076
BsaHI GRCGYC 1 cut(s) 1072
BsaJI CCNNGG 6 cut(s) 185, 505, 538, 625, 644, 869
BsaWI WCCGGW 3 cut(s) 426, 691, 991
Bsc4I CCNNNNNNNGG 7 cut(s) 81, 115, 145, 557, 631, 645, 938
Bse1I ACTGG 4 cut(s) 733, 892, 907, 1008
BseAI TCCGGA 1 cut(s) 991
BseBI CCWGG 3 cut(s) 626, 870, 1068
BseDI CCNNGG 6 cut(s) 185, 505, 538, 625, 644, 869
BseLI CCNNNNNNNGG 7 cut(s) 81, 115, 145, 557, 631, 645, 938
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 4 cut(s) 733, 892, 907, 1008
BseRI GAGGAG 3 cut(s) 131, 134, 786
BseXI GCAGC 6 cut(s) 243, 260, 265, 556, 766, 904
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 2 cut(s) 442, 646
BshFI GGCC 7 cut(s) 26, 537, 624, 662, 676, 868, 907
BsiHKAI GWGCWC 1 cut(s) 343
BsiHKCI CYCGRG 2 cut(s) 175, 581
BsiSI CCGG 6 cut(s) 109, 427, 677, 692, 992, 1075
BslI CCNNNNNNNGG 7 cut(s) 81, 115, 145, 557, 631, 645, 938
BsnI GGCC 7 cut(s) 26, 537, 624, 662, 676, 868, 907
BsoBI CYCGRG 2 cut(s) 175, 581
Bsp1286I GDGCHC 2 cut(s) 343, 632
Bsp13I TCCGGA 1 cut(s) 991
Bsp143I GATC 5 cut(s) 69, 105, 388, 402, 840
Bsp1720I GCTNAGC 2 cut(s) 757, 1080
Bsp19I CCATGG 2 cut(s) 505, 538
BspACI CCGC 8 cut(s) 46, 65, 295, 374, 644, 646, 663, 753
BspANI GGCC 7 cut(s) 26, 537, 624, 662, 676, 868, 907
BspCNI CTCAG 1 cut(s) 565
BspEI TCCGGA 1 cut(s) 991
BspFNI CGCG 2 cut(s) 442, 646
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 6 cut(s) 183, 404, 675, 795, 892, 1023
BspMI ACCTGC 2 cut(s) 727, 836
BspPI GGATC 4 cut(s) 100, 396, 397, 410
BspTI CTTAAG 1 cut(s) 266
BsrI ACTGG 4 cut(s) 733, 892, 907, 1008
BssECI CCNNGG 6 cut(s) 185, 505, 538, 625, 644, 869
BssMI GATC 5 cut(s) 69, 105, 388, 402, 840
BssNI GRCGYC 1 cut(s) 1072
BssT1I CCWWGG 3 cut(s) 185, 505, 538
Bst2UI CCWGG 3 cut(s) 626, 870, 1068
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 1072
BstAFI CTTAAG 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 779
BstC8I GCNNGC 2 cut(s) 216, 792
BstDEI CTNAG 4 cut(s) 573, 757, 943, 1080
BstDSI CCRYGG 3 cut(s) 505, 538, 644
BstFNI CGCG 2 cut(s) 442, 646
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 3 cut(s) 253, 442, 580
BstKTI GATC 5 cut(s) 72, 108, 391, 405, 843
BstMBI GATC 5 cut(s) 69, 105, 388, 402, 840
BstMWI GCNNNNNNNGC 4 cut(s) 575, 592, 779, 874
BstNI CCWGG 3 cut(s) 626, 870, 1068
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 4 cut(s) 624, 868, 1066, 1074
BstUI CGCG 2 cut(s) 442, 646
BstV1I GCAGC 6 cut(s) 243, 260, 265, 556, 766, 904
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 7 cut(s) 26, 537, 624, 662, 676, 868, 907
BtgI CCRYGG 3 cut(s) 505, 538, 644
BtgZI GCGATG 1 cut(s) 317
BveI ACCTGC 2 cut(s) 727, 836
Cac8I GCNNGC 2 cut(s) 216, 792
CaiI CAGNNNCTG 1 cut(s) 779
CciI TCATGA 1 cut(s) 415
CfoI GCGC 3 cut(s) 253, 442, 580
Cfr13I GGNCC 7 cut(s) 182, 548, 622, 674, 866, 891, 905
Cfr42I CCGCGG 1 cut(s) 647
CseI GACGC 2 cut(s) 785, 1080
CspCI CAANNNNNGTGG 2 cut(s) 1086, 1121
CviAII CATG 6 cut(s) 205, 392, 416, 506, 539, 670
DdeI CTNAG 4 cut(s) 573, 757, 943, 1080
DpnI GATC 5 cut(s) 71, 107, 390, 404, 842
DpnII GATC 5 cut(s) 69, 105, 388, 402, 840
DraI TTTAAA 1 cut(s) 967
DrdI GACNNNNNNGTC 1 cut(s) 131
DriI GACNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 3 cut(s) 24, 535, 660
Eam1104I CTCTTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 3 cut(s) 185, 505, 538
Eco24I GRGCYC 1 cut(s) 632
Eco47I GGWCC 3 cut(s) 182, 548, 891
Eco88I CYCGRG 2 cut(s) 175, 581
EcoO109I RGGNCCY 2 cut(s) 182, 622
EcoRI GAATTC 1 cut(s) 995
EcoRII CCWGG 3 cut(s) 624, 868, 1066
EcoT14I CCWWGG 3 cut(s) 185, 505, 538
EcoT38I GRGCYC 1 cut(s) 632
ErhI CCWWGG 3 cut(s) 185, 505, 538
FaeI CATG 6 cut(s) 208, 395, 419, 509, 542, 673
FaiI YATR 9 cut(s) 195, 206, 393, 417, 495, 507, 540, 671, 1135
FatI CATG 6 cut(s) 204, 391, 415, 505, 538, 669
FauI CCCGC 1 cut(s) 639
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 9 cut(s) 66, 249, 254, 257, 570, 663, 754, 780, 918
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 9 cut(s) 66, 249, 254, 257, 570, 663, 754, 780, 918
FspBI CTAG 5 cut(s) 242, 587, 921, 972, 1013
GlaI GCGC 3 cut(s) 252, 441, 579
GluI GCNGC 9 cut(s) 66, 249, 254, 257, 570, 663, 754, 780, 918
GsuI CTGGAG 1 cut(s) 783
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 7 cut(s) 26, 537, 624, 662, 676, 868, 907
HapII CCGG 6 cut(s) 109, 427, 677, 692, 992, 1075
HgaI GACGC 2 cut(s) 785, 1080
HhaI GCGC 3 cut(s) 253, 442, 580
Hin1I GRCGYC 1 cut(s) 1072
Hin1II CATG 6 cut(s) 208, 395, 419, 509, 542, 673
Hin6I GCGC 3 cut(s) 251, 440, 578
HinP1I GCGC 3 cut(s) 251, 440, 578
HinfI GANTC 3 cut(s) 4, 163, 412
HpaII CCGG 6 cut(s) 109, 427, 677, 692, 992, 1075
HphI GGTGA 6 cut(s) 169, 416, 487, 743, 754, 1019
Hpy166II GTNNAC 4 cut(s) 424, 900, 1010, 1064
Hpy188I TCNGA 3 cut(s) 238, 335, 700
Hpy188III TCNNGA 5 cut(s) 397, 416, 639, 800, 992
Hpy8I GTNNAC 4 cut(s) 424, 900, 1010, 1064
Hpy99I CGWCG 4 cut(s) 230, 447, 466, 814
HpyAV CCTTC 8 cut(s) 36, 85, 555, 739, 918, 1048, 1103, 1147
HpyCH4V TGCA 5 cut(s) 259, 379, 490, 773, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 575, 592, 779, 874
HpyF3I CTNAG 4 cut(s) 573, 757, 943, 1080
Hsp92I GRCGYC 1 cut(s) 1072
Hsp92II CATG 6 cut(s) 208, 395, 419, 509, 542, 673
HspAI GCGC 3 cut(s) 251, 440, 578
Kpn2I TCCGGA 1 cut(s) 991
KspI CCGCGG 1 cut(s) 647
Kzo9I GATC 5 cut(s) 69, 105, 388, 402, 840
LmnI GCTCC 5 cut(s) 799, 874, 1048, 1142, 1156
Lsp1109I GCAGC 6 cut(s) 243, 260, 265, 556, 766, 904
LweI GCATC 4 cut(s) 268, 294, 582, 791
MaeI CTAG 5 cut(s) 242, 587, 921, 972, 1013
MaeIII GTNAC 2 cut(s) 554, 1086
MalI GATC 5 cut(s) 71, 107, 390, 404, 842
MboI GATC 5 cut(s) 69, 105, 388, 402, 840
MboII GAAGA 4 cut(s) 127, 172, 936, 1063
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 2 cut(s) 343, 632
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 5 cut(s) 140, 830, 981, 995, 1026
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 3 cut(s) 744, 1024, 1164
Mox20I TGGCCA 1 cut(s) 537
MroI TCCGGA 1 cut(s) 991
MscI TGGCCA 1 cut(s) 537
MseI TTAA 3 cut(s) 144, 267, 966
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 3 cut(s) 256, 646, 665
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 6 cut(s) 109, 427, 677, 692, 992, 1075
MspR9I CCNGG 4 cut(s) 626, 870, 1068, 1076
MvaI CCWGG 3 cut(s) 626, 870, 1068
MvnI CGCG 2 cut(s) 442, 646
MwoI GCNNNNNNNGC 4 cut(s) 575, 592, 779, 874
NciI CCSGG 1 cut(s) 1076
NcoI CCATGG 2 cut(s) 505, 538
NdeII GATC 5 cut(s) 69, 105, 388, 402, 840
NlaIII CATG 6 cut(s) 208, 395, 419, 509, 542, 673
NlaIV GGNNCC 6 cut(s) 183, 404, 675, 795, 892, 1023
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 554
PagI TCATGA 1 cut(s) 415
PaqCI CACCTGC 1 cut(s) 727
PfeI GAWTC 2 cut(s) 4, 412
PflFI GACNNNGTC 1 cut(s) 889
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 9 cut(s) 67, 250, 255, 258, 571, 664, 755, 781, 919
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PpuMI RGGWCCY 1 cut(s) 182
PshAI GACNNNNGTC 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 3 cut(s) 624, 868, 1066
PspGI CCWGG 3 cut(s) 624, 868, 1066
PspN4I GGNNCC 6 cut(s) 183, 404, 675, 795, 892, 1023
PspPI GGNCC 7 cut(s) 182, 548, 622, 674, 866, 891, 905
PspPPI RGGWCCY 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 402
PsyI GACNNNGTC 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 256
SacII CCGCGG 1 cut(s) 647
SaqAI TTAA 3 cut(s) 144, 267, 966
SatI GCNGC 9 cut(s) 66, 249, 254, 257, 570, 663, 754, 780, 918
Sau3AI GATC 5 cut(s) 69, 105, 388, 402, 840
Sau96I GGNCC 7 cut(s) 182, 548, 622, 674, 866, 891, 905
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 4 cut(s) 626, 870, 1068, 1076
SduI GDGCHC 2 cut(s) 343, 632
SfaNI GCATC 4 cut(s) 268, 294, 582, 791
Sfr303I CCGCGG 1 cut(s) 647
SgrBI CCGCGG 1 cut(s) 647
SinI GGWCC 3 cut(s) 182, 548, 891
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SpeI ACTAGT 1 cut(s) 1012
Sse9I AATT 5 cut(s) 140, 830, 981, 995, 1026
SsiI CCGC 8 cut(s) 46, 65, 295, 374, 644, 646, 663, 753
SspMI CTAG 5 cut(s) 242, 587, 921, 972, 1013
StyD4I CCNGG 4 cut(s) 624, 868, 1066, 1074
StyI CCWWGG 3 cut(s) 185, 505, 538
TaqI TCGA 3 cut(s) 611, 1031, 1145
TasI AATT 5 cut(s) 140, 830, 981, 995, 1026
TauI GCSGC 3 cut(s) 68, 665, 756
TfiI GAWTC 2 cut(s) 4, 412
Tru1I TTAA 3 cut(s) 144, 267, 966
Tru9I TTAA 3 cut(s) 144, 267, 966
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 6 cut(s) 248, 253, 256, 569, 779, 917
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 2 cut(s) 404, 510
TspGWI ACGGA 5 cut(s) 243, 395, 460, 540, 573
Tth111I GACNNNGTC 1 cut(s) 889
Van91I CCANNNNNTGG 1 cut(s) 81
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 182, 548, 891
XapI RAATTY 1 cut(s) 995
XcmI CCANNNNNNNNNTGG 2 cut(s) 45, 211
XmiI GTMKAC 1 cut(s) 899
XspI CTAG 5 cut(s) 242, 587, 921, 972, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.