ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 203, 227 |
| Acc16I | TGCGCA | 2 cut(s) | 368, 380 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 153 |
| AciI | CCGC | 3 cut(s) | 94, 326, 353 |
| AclWI | GGATC | 1 cut(s) | 172 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 153, 187, 217 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AluBI | AGCT | 2 cut(s) | 42, 392 |
| AluI | AGCT | 2 cut(s) | 42, 392 |
| Alw21I | GWGCWC | 2 cut(s) | 44, 123 |
| AlwI | GGATC | 1 cut(s) | 172 |
| AoxI | GGCC | 3 cut(s) | 288, 318, 411 |
| ApeKI | GCWGC | 3 cut(s) | 97, 137, 328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 185, 217 |
| AspLEI | GCGC | 2 cut(s) | 369, 381 |
| AspS9I | GGNCC | 2 cut(s) | 411, 420 |
| AsuHPI | GGTGA | 1 cut(s) | 367 |
| AvaII | GGWCC | 1 cut(s) | 420 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| BbsI | GAAGAC | 1 cut(s) | 199 |
| Bbv12I | GWGCWC | 2 cut(s) | 44, 123 |
| BbvI | GCAGC | 3 cut(s) | 84, 149, 315 |
| BclI | TGATCA | 1 cut(s) | 436 |
| BisI | GCNGC | 4 cut(s) | 95, 98, 138, 329 |
| BlsI | GCNGC | 4 cut(s) | 96, 99, 139, 330 |
| Bme18I | GGWCC | 1 cut(s) | 420 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 420 |
| BmiI | GGNNCC | 2 cut(s) | 9, 421 |
| BmsI | GCATC | 4 cut(s) | 49, 54, 340, 378 |
| BpiI | GAAGAC | 1 cut(s) | 199 |
| BpuEI | CTTGAG | 2 cut(s) | 299, 359 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 153, 187, 217 |
| Bse3DI | GCAATG | 1 cut(s) | 388 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 153, 187, 217 |
| BseMI | GCAATG | 1 cut(s) | 388 |
| BseMII | CTCAG | 1 cut(s) | 147 |
| BseRI | GAGGAG | 3 cut(s) | 41, 66, 203 |
| BseXI | GCAGC | 3 cut(s) | 84, 149, 315 |
| BshFI | GGCC | 3 cut(s) | 290, 320, 413 |
| BsiHKAI | GWGCWC | 2 cut(s) | 44, 123 |
| BslFI | GGGAC | 1 cut(s) | 433 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 153, 187, 217 |
| BsmFI | GGGAC | 1 cut(s) | 433 |
| BsnI | GGCC | 3 cut(s) | 290, 320, 413 |
| Bsp1286I | GDGCHC | 2 cut(s) | 44, 123 |
| Bsp143I | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| BspACI | CCGC | 3 cut(s) | 94, 326, 353 |
| BspANI | GGCC | 3 cut(s) | 290, 320, 413 |
| BspCNI | CTCAG | 1 cut(s) | 146 |
| BspLI | GGNNCC | 2 cut(s) | 9, 421 |
| BspPI | GGATC | 1 cut(s) | 172 |
| BsrDI | GCAATG | 1 cut(s) | 388 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| BssT1I | CCWWGG | 1 cut(s) | 414 |
| Bst4CI | ACNGT | 1 cut(s) | 302 |
| BstDEI | CTNAG | 2 cut(s) | 105, 133 |
| BstHHI | GCGC | 2 cut(s) | 369, 381 |
| BstKTI | GATC | 5 cut(s) | 144, 180, 313, 405, 439 |
| BstMBI | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstV1I | GCAGC | 3 cut(s) | 84, 149, 315 |
| BstV2I | GAAGAC | 1 cut(s) | 199 |
| BsuRI | GGCC | 3 cut(s) | 290, 320, 413 |
| BtgZI | GCGATG | 2 cut(s) | 77, 355 |
| BtsIMutI | CAGTG | 1 cut(s) | 307 |
| CfoI | GCGC | 2 cut(s) | 369, 381 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 420 |
| CviAII | CATG | 3 cut(s) | 14, 258, 277 |
| CviJI | RGCY | 9 cut(s) | 8, 32, 42, 97, 227, 290, 320, 392, 413 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 32, 42, 97, 227, 290, 320, 392, 413 |
| DdeI | CTNAG | 2 cut(s) | 105, 133 |
| DpnI | GATC | 5 cut(s) | 143, 179, 312, 404, 438 |
| DpnII | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 203, 227 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 203, 227 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Ecl136II | GAGCTC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 1 cut(s) | 414 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco47I | GGWCC | 1 cut(s) | 420 |
| Eco53kI | GAGCTC | 1 cut(s) | 42 |
| EcoICRI | GAGCTC | 1 cut(s) | 42 |
| EcoO109I | RGGNCCY | 1 cut(s) | 420 |
| EcoT14I | CCWWGG | 1 cut(s) | 414 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 1 cut(s) | 414 |
| FaeI | CATG | 3 cut(s) | 17, 261, 280 |
| FaiI | YATR | 7 cut(s) | 15, 259, 267, 278, 297, 346, 377 |
| FaqI | GGGAC | 1 cut(s) | 433 |
| FatI | CATG | 3 cut(s) | 13, 257, 276 |
| FbaI | TGATCA | 1 cut(s) | 436 |
| Fnu4HI | GCNGC | 4 cut(s) | 95, 98, 138, 329 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 4 cut(s) | 95, 98, 138, 329 |
| FspI | TGCGCA | 2 cut(s) | 368, 380 |
| GlaI | GCGC | 2 cut(s) | 368, 380 |
| GluI | GCNGC | 4 cut(s) | 95, 98, 138, 329 |
| HaeIII | GGCC | 3 cut(s) | 290, 320, 413 |
| HhaI | GCGC | 2 cut(s) | 369, 381 |
| Hin1II | CATG | 3 cut(s) | 17, 261, 280 |
| Hin6I | GCGC | 2 cut(s) | 367, 379 |
| HinP1I | GCGC | 2 cut(s) | 367, 379 |
| HindIII | AAGCTT | 1 cut(s) | 390 |
| HinfI | GANTC | 1 cut(s) | 241 |
| HphI | GGTGA | 1 cut(s) | 367 |
| Hpy188I | TCNGA | 4 cut(s) | 182, 310, 402, 407 |
| HpyAV | CCTTC | 2 cut(s) | 103, 352 |
| HpyCH4III | ACNGT | 1 cut(s) | 302 |
| HpyCH4V | TGCA | 3 cut(s) | 17, 67, 331 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 133 |
| Hsp92II | CATG | 3 cut(s) | 17, 261, 280 |
| HspAI | GCGC | 2 cut(s) | 367, 379 |
| Ksp22I | TGATCA | 1 cut(s) | 436 |
| Kzo9I | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| LmnI | GCTCC | 2 cut(s) | 13, 126 |
| LpnPI | CCDG | 6 cut(s) | 139, 170, 208, 234, 416, 425 |
| Lsp1109I | GCAGC | 3 cut(s) | 84, 149, 315 |
| LweI | GCATC | 4 cut(s) | 49, 54, 340, 378 |
| MalI | GATC | 5 cut(s) | 143, 179, 312, 404, 438 |
| MboI | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| MboII | GAAGA | 3 cut(s) | 68, 193, 199 |
| MhlI | GDGCHC | 2 cut(s) | 44, 123 |
| MluCI | AATT | 2 cut(s) | 212, 271 |
| MmeI | TCCRAC | 2 cut(s) | 28, 205 |
| MnlI | CCTC | 7 cut(s) | 19, 21, 22, 44, 181, 184, 334 |
| MseI | TTAA | 2 cut(s) | 161, 395 |
| MslI | CAYNNNNRTG | 1 cut(s) | 374 |
| MspA1I | CMGCKG | 1 cut(s) | 328 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NdeII | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| NlaIII | CATG | 3 cut(s) | 17, 261, 280 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 421 |
| NsbI | TGCGCA | 2 cut(s) | 368, 380 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 201 |
| PfeI | GAWTC | 1 cut(s) | 241 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 153 |
| PkrI | GCNGC | 4 cut(s) | 96, 99, 139, 330 |
| PpuMI | RGGWCCY | 1 cut(s) | 420 |
| Psp124BI | GAGCTC | 1 cut(s) | 44 |
| Psp5II | RGGWCCY | 1 cut(s) | 420 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 421 |
| PspPI | GGNCC | 2 cut(s) | 411, 420 |
| PspPPI | RGGWCCY | 1 cut(s) | 420 |
| RseI | CAYNNNNRTG | 1 cut(s) | 374 |
| SacI | GAGCTC | 1 cut(s) | 44 |
| SaqAI | TTAA | 2 cut(s) | 161, 395 |
| SatI | GCNGC | 4 cut(s) | 95, 98, 138, 329 |
| Sau3AI | GATC | 5 cut(s) | 141, 177, 310, 402, 436 |
| Sau96I | GGNCC | 2 cut(s) | 411, 420 |
| SduI | GDGCHC | 2 cut(s) | 44, 123 |
| SetI | ASST | 8 cut(s) | 22, 44, 87, 114, 345, 394, 425, 435 |
| SfaNI | GCATC | 4 cut(s) | 49, 54, 340, 378 |
| SinI | GGWCC | 1 cut(s) | 420 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 374 |
| SmlI | CTYRAG | 2 cut(s) | 314, 338 |
| SmoI | CTYRAG | 2 cut(s) | 314, 338 |
| Sse9I | AATT | 2 cut(s) | 212, 271 |
| SsiI | CCGC | 3 cut(s) | 94, 326, 353 |
| SstI | GAGCTC | 1 cut(s) | 44 |
| StyI | CCWWGG | 1 cut(s) | 414 |
| TaaI | ACNGT | 1 cut(s) | 302 |
| TasI | AATT | 2 cut(s) | 212, 271 |
| TauI | GCSGC | 1 cut(s) | 97 |
| TfiI | GAWTC | 1 cut(s) | 241 |
| Tru1I | TTAA | 2 cut(s) | 161, 395 |
| Tru9I | TTAA | 2 cut(s) | 161, 395 |
| TscAI | CASTG | 1 cut(s) | 307 |
| TseI | GCWGC | 3 cut(s) | 97, 137, 328 |
| TspDTI | ATGAA | 1 cut(s) | 246 |
| TspRI | CASTG | 1 cut(s) | 307 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 1 cut(s) | 420 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 283 |