Rmu_sc0013860.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013860.1
OG0000123
Physical Location & Seq
Forward (+)
19271 .. 20511
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013860.1_g000004.1.cds

Sequence Viewer

Length: 1098 bp
atggcggcagtggctccgtcagtactgtttgaagagatcgtggtgagcctgcttggtagagaggatgctatccatgattcttttttctatctgtgtggccgacttctgtccaagaaggcggaggaggatgacatctttgtcttccaatttaaggagatggaggtgaagaatcgggttatctcggggggtccttggttctataacaactccatgctgttactggcggattacgaccgaatttctgacctagaagcagcgctgctgcatctccttaaggtgtgggtggctgtgaaagggttgcagatagcgatgcgaaatgagaaagccctaaccctaatcggacgagcactgggggactttattcgagttgatcagggggcggtgcagagaaaggatcatgtccagaggatccatgtgattcatgatgttcgccagaggatttgggcgagacggaggtttgacttttcatcggttgtttcggtgatgggggagttgcaatatgaaaaatgccatgggttgtgtgtggcttgtggtctttttggccatgggggaggaccgtgtgacggaaggttggctgcggaggcgctcgggctggtgatgccgggcacggtcgtggggccggaggtgttttctccggtgtcaggggttctgggtttggtggcggaggcgactggtgatcaggtgggtggctcggagttggaggttgcaaacgctgcatctgggctggctgcttcggaaaaaccgacgggaaaccctaactttgaattagggttgaccgcaggtttgactaggggcttgattgggtctgttgggccaggggagcaaagtttgactgggtccaagtgtgctgggccttctgctgctgctggaagaagtccaaacttgggcttgggcttgggtgtgagaaaaaaggtttttaaacctagtctggcaattatccctccagaattccaactgggtgaactagtggaggttccaatttcgatgggagtagctccaaagaagaagggtcgtccatctagatgccgggctaagcagttacaatctccaaagaaagtggaaggtaatgatgttggtgtggatttatgctccaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

365

Amino Acids

38.91

Weight (kDa)

8.08

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 770
AciI CCGC 7 cut(s) 5, 119, 224, 380, 578, 662, 777
AclWI GGATC 3 cut(s) 402, 403, 416
AcoI YGGCCR 2 cut(s) 97, 541
AcsI RAATTY 2 cut(s) 237, 947
AfaI GTAC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 4 cut(s) 151, 563, 641, 884
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 32, 764
AhlI ACTAGT 1 cut(s) 964
AjnI CCWGG 1 cut(s) 814
AleI CACNNNNGTG 1 cut(s) 611
AluBI AGCT 1 cut(s) 995
AluI AGCT 1 cut(s) 995
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 3 cut(s) 402, 403, 416
Ama87I CYCGRG 2 cut(s) 181, 587
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 5 cut(s) 97, 541, 617, 812, 851
ApeKI GCWGC 8 cut(s) 254, 259, 262, 575, 713, 728, 860, 863
ApoI RAATTY 2 cut(s) 237, 947
ArsI GACNNNNNNTTYG 2 cut(s) 766, 798
AspLEI GCGC 2 cut(s) 259, 586
AspS9I GGNCC 6 cut(s) 188, 554, 617, 812, 837, 851
AsuC2I CCSGG 2 cut(s) 603, 1028
AsuHPI GGTGA 6 cut(s) 55, 175, 493, 607, 686, 971
AvaI CYCGRG 2 cut(s) 181, 587
AvaII GGWCC 3 cut(s) 188, 554, 837
BaeGI GKGCMC 1 cut(s) 608
BalI TGGCCA 1 cut(s) 543
BamHI GGATCC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 8 cut(s) 246, 249, 266, 562, 700, 715, 847, 850
BccI CCATC 4 cut(s) 151, 478, 979, 1024
BciT130I CCWGG 1 cut(s) 816
BclI TGATCA 2 cut(s) 370, 676
BcnI CCSGG 2 cut(s) 603, 1028
BcoDI GTCTC 1 cut(s) 442
BcuI ACTAGT 1 cut(s) 964
BfaI CTAG 6 cut(s) 248, 789, 924, 965, 1020, 1096
BfoI RGCGCY 2 cut(s) 260, 587
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 770
BisI GCNGC 9 cut(s) 6, 255, 260, 263, 576, 714, 729, 861, 864
BlpI GCTNAGC 1 cut(s) 1032
BlsI GCNGC 9 cut(s) 7, 256, 261, 264, 577, 715, 730, 862, 865
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 3 cut(s) 603, 816, 1028
Bme18I GGWCC 3 cut(s) 188, 554, 837
BmeT110I CYCGRG 2 cut(s) 181, 587
BmgT120I GGNCC 6 cut(s) 188, 554, 617, 812, 837, 851
BmiI GGNNCC 6 cut(s) 15, 189, 410, 618, 838, 975
BmrFI CCNGG 3 cut(s) 603, 816, 1028
BmrI ACTGGG 3 cut(s) 359, 843, 965
BmsI GCATC 6 cut(s) 55, 274, 300, 588, 725, 1013
BmuI ACTGGG 3 cut(s) 359, 843, 965
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 927
Bpu1102I GCTNAGC 1 cut(s) 1032
BpuMI CCSGG 2 cut(s) 603, 1028
BsaJI CCNNGG 4 cut(s) 191, 511, 544, 815
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 563, 641, 884
Bse1I ACTGG 5 cut(s) 225, 354, 676, 838, 960
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 4 cut(s) 191, 511, 544, 815
BseGI GGATG 2 cut(s) 70, 133
BseLI CCNNNNNNNGG 4 cut(s) 151, 563, 641, 884
BseNI ACTGG 5 cut(s) 225, 354, 676, 838, 960
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 608
BseXI GCAGC 8 cut(s) 246, 249, 266, 562, 700, 715, 847, 850
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 1 cut(s) 404
Bsh1285I CGRYCG 2 cut(s) 235, 612
BshFI GGCC 5 cut(s) 99, 543, 619, 814, 853
BsiEI CGRYCG 2 cut(s) 235, 612
BsiHKAI GWGCWC 1 cut(s) 349
BsiHKCI CYCGRG 2 cut(s) 181, 587
BsiSI CCGG 4 cut(s) 602, 620, 635, 1027
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 4 cut(s) 151, 563, 641, 884
BsmAI GTCTC 1 cut(s) 442
BsmBI CGTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 5 cut(s) 99, 543, 619, 814, 853
BsoBI CYCGRG 2 cut(s) 181, 587
Bsp1286I GDGCHC 2 cut(s) 349, 608
Bsp143I GATC 5 cut(s) 36, 370, 394, 408, 676
Bsp1720I GCTNAGC 1 cut(s) 1032
Bsp19I CCATGG 2 cut(s) 511, 544
BspACI CCGC 7 cut(s) 5, 119, 224, 380, 578, 662, 777
BspANI GGCC 5 cut(s) 99, 543, 619, 814, 853
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 6 cut(s) 15, 189, 410, 618, 838, 975
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 3 cut(s) 402, 403, 416
BspTI CTTAAG 1 cut(s) 272
BsrI ACTGG 5 cut(s) 225, 354, 676, 838, 960
BssECI CCNNGG 4 cut(s) 191, 511, 544, 815
BssMI GATC 5 cut(s) 36, 370, 394, 408, 676
BssT1I CCWWGG 3 cut(s) 191, 511, 544
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 3 cut(s) 27, 558, 610
Bst6I CTCTTC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 2 cut(s) 50, 726
BstDEI CTNAG 1 cut(s) 1032
BstDSI CCRYGG 2 cut(s) 511, 544
BstF5I GGATG 2 cut(s) 70, 133
BstH2I RGCGCY 2 cut(s) 260, 587
BstHHI GCGC 2 cut(s) 259, 586
BstKTI GATC 5 cut(s) 39, 373, 397, 411, 679
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 5 cut(s) 36, 370, 394, 408, 676
BstMCI CGRYCG 2 cut(s) 235, 612
BstMWI GCNNNNNNNGC 5 cut(s) 11, 581, 598, 713, 820
BstNI CCWGG 1 cut(s) 816
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 3 cut(s) 601, 814, 1026
BstSLI GKGCMC 1 cut(s) 608
BstV1I GCAGC 8 cut(s) 246, 249, 266, 562, 700, 715, 847, 850
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 5 cut(s) 99, 543, 619, 814, 853
BtgI CCRYGG 2 cut(s) 511, 544
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 70, 133
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 347
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 2 cut(s) 50, 726
CciI TCATGA 1 cut(s) 421
CfoI GCGC 2 cut(s) 259, 586
Cfr13I GGNCC 6 cut(s) 188, 554, 617, 812, 837, 851
Csp6I GTAC 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 1038, 1073
CviAII CATG 7 cut(s) 74, 211, 398, 413, 422, 512, 545
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 1032
DpnI GATC 5 cut(s) 38, 372, 396, 410, 678
DpnII GATC 5 cut(s) 36, 370, 394, 408, 676
DraI TTTAAA 1 cut(s) 919
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 97, 541
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 3 cut(s) 134, 239, 677
Eco130I CCWWGG 3 cut(s) 191, 511, 544
Eco47I GGWCC 3 cut(s) 188, 554, 837
Eco47III AGCGCT 1 cut(s) 258
Eco88I CYCGRG 2 cut(s) 181, 587
EcoO109I RGGNCCY 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 947
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 3 cut(s) 191, 511, 544
ErhI CCWWGG 3 cut(s) 191, 511, 544
Esp3I CGTCTC 1 cut(s) 442
FaeI CATG 7 cut(s) 77, 214, 401, 416, 425, 515, 548
FaqI GGGAC 1 cut(s) 368
FatI CATG 7 cut(s) 73, 210, 397, 412, 421, 511, 544
FbaI TGATCA 2 cut(s) 370, 676
Fnu4HI GCNGC 9 cut(s) 6, 255, 260, 263, 576, 714, 729, 861, 864
FokI GGATG 2 cut(s) 77, 140
Fsp4HI GCNGC 9 cut(s) 6, 255, 260, 263, 576, 714, 729, 861, 864
FspBI CTAG 6 cut(s) 248, 789, 924, 965, 1020, 1096
GlaI GCGC 2 cut(s) 258, 585
GluI GCNGC 9 cut(s) 6, 255, 260, 263, 576, 714, 729, 861, 864
GsaI CCCAGC 1 cut(s) 852
GsuI CTGGAG 1 cut(s) 927
HaeII RGCGCY 2 cut(s) 260, 587
HaeIII GGCC 5 cut(s) 99, 543, 619, 814, 853
HapII CCGG 4 cut(s) 602, 620, 635, 1027
HhaI GCGC 2 cut(s) 259, 586
Hin1II CATG 7 cut(s) 77, 214, 401, 416, 425, 515, 548
Hin6I GCGC 2 cut(s) 257, 584
HinP1I GCGC 2 cut(s) 257, 584
HincII GTYRAC 1 cut(s) 774
HindII GTYRAC 1 cut(s) 774
HinfI GANTC 3 cut(s) 77, 169, 418
HpaII CCGG 4 cut(s) 602, 620, 635, 1027
HphI GGTGA 6 cut(s) 55, 175, 493, 607, 686, 971
Hpy166II GTNNAC 2 cut(s) 774, 962
Hpy188I TCNGA 4 cut(s) 244, 341, 694, 736
Hpy188III TCNNGA 4 cut(s) 403, 422, 944, 1020
Hpy8I GTNNAC 2 cut(s) 774, 962
Hpy99I CGWCG 1 cut(s) 748
HpyAV CCTTC 5 cut(s) 109, 561, 864, 1000, 1055
HpyCH4III ACNGT 3 cut(s) 27, 558, 610
HpyCH4V TGCA 6 cut(s) 265, 301, 385, 496, 707, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 581, 598, 713, 820
HpyF3I CTNAG 1 cut(s) 1032
Hsp92II CATG 7 cut(s) 77, 214, 401, 416, 425, 515, 548
HspAI GCGC 2 cut(s) 257, 584
Ksp22I TGATCA 2 cut(s) 370, 676
Kzo9I GATC 5 cut(s) 36, 370, 394, 408, 676
LmnI GCTCC 4 cut(s) 19, 820, 1000, 1094
Lsp1109I GCAGC 8 cut(s) 246, 249, 266, 562, 700, 715, 847, 850
LweI GCATC 6 cut(s) 55, 274, 300, 588, 725, 1013
MaeI CTAG 6 cut(s) 248, 789, 924, 965, 1020, 1096
MaeIII GTNAC 3 cut(s) 216, 560, 1038
MalI GATC 5 cut(s) 38, 372, 396, 410, 678
MboI GATC 5 cut(s) 36, 370, 394, 408, 676
MboII GAAGA 5 cut(s) 44, 133, 178, 882, 1015
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 349, 608
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 6 cut(s) 146, 237, 764, 933, 947, 978
MluNI TGGCCA 1 cut(s) 543
MmeI TCCRAC 2 cut(s) 678, 976
Mox20I TGGCCA 1 cut(s) 543
MscI TGGCCA 1 cut(s) 543
MseI TTAA 3 cut(s) 150, 273, 918
MslI CAYNNNNRTG 2 cut(s) 611, 1021
Msp20I TGGCCA 1 cut(s) 543
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 4 cut(s) 602, 620, 635, 1027
MspR9I CCNGG 3 cut(s) 603, 816, 1028
MvaI CCWGG 1 cut(s) 816
MwoI GCNNNNNNNGC 5 cut(s) 11, 581, 598, 713, 820
NciI CCSGG 2 cut(s) 603, 1028
NcoI CCATGG 2 cut(s) 511, 544
NdeII GATC 5 cut(s) 36, 370, 394, 408, 676
NlaIII CATG 7 cut(s) 77, 214, 401, 416, 425, 515, 548
NlaIV GGNNCC 6 cut(s) 15, 189, 410, 618, 838, 975
NmuCI GTSAC 1 cut(s) 560
OliI CACNNNNGTG 1 cut(s) 611
PagI TCATGA 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 740
PfeI GAWTC 3 cut(s) 77, 169, 418
PflFI GACNNNGTC 1 cut(s) 835
PkrI GCNGC 9 cut(s) 7, 256, 261, 264, 577, 715, 730, 862, 865
PpuMI RGGWCCY 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 814
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 6 cut(s) 15, 189, 410, 618, 838, 975
PspPI GGNCC 6 cut(s) 188, 554, 617, 812, 837, 851
PspPPI RGGWCCY 1 cut(s) 188
PsuI RGATCY 1 cut(s) 408
PsyI GACNNNGTC 1 cut(s) 835
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 2 cut(s) 611, 1021
SaqAI TTAA 3 cut(s) 150, 273, 918
SatI GCNGC 9 cut(s) 6, 255, 260, 263, 576, 714, 729, 861, 864
Sau3AI GATC 5 cut(s) 36, 370, 394, 408, 676
Sau96I GGNCC 6 cut(s) 188, 554, 617, 812, 837, 851
ScaI AGTACT 1 cut(s) 24
ScrFI CCNGG 3 cut(s) 603, 816, 1028
SduI GDGCHC 2 cut(s) 349, 608
SfaNI GCATC 6 cut(s) 55, 274, 300, 588, 725, 1013
SinI GGWCC 3 cut(s) 188, 554, 837
SmiMI CAYNNNNRTG 2 cut(s) 611, 1021
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SpeI ACTAGT 1 cut(s) 964
Sse9I AATT 6 cut(s) 146, 237, 764, 933, 947, 978
SsiI CCGC 7 cut(s) 5, 119, 224, 380, 578, 662, 777
SspMI CTAG 6 cut(s) 248, 789, 924, 965, 1020, 1096
StyD4I CCNGG 3 cut(s) 601, 814, 1026
StyI CCWWGG 3 cut(s) 191, 511, 544
TaaI ACNGT 3 cut(s) 27, 558, 610
TaqI TCGA 2 cut(s) 364, 983
TaqII GACCGA 1 cut(s) 249
TasI AATT 6 cut(s) 146, 237, 764, 933, 947, 978
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 77, 169, 418
Tru1I TTAA 3 cut(s) 150, 273, 918
Tru9I TTAA 3 cut(s) 150, 273, 918
TscAI CASTG 2 cut(s) 15, 354
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 8 cut(s) 254, 259, 262, 575, 713, 728, 860, 863
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 3 cut(s) 410, 456, 516
TspGWI ACGGA 3 cut(s) 6, 466, 579
TspRI CASTG 2 cut(s) 15, 354
Tth111I GACNNNGTC 1 cut(s) 835
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 3 cut(s) 188, 554, 837
XapI RAATTY 2 cut(s) 237, 947
XbaI TCTAGA 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XspI CTAG 6 cut(s) 248, 789, 924, 965, 1020, 1096
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.