Rorug02G0163300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000123
Physical Location & Seq
Reverse (-)
14566411 .. 14570322
3912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0163300.1

Sequence Viewer

Length: 2877 bp
ATGCATTTTTCAATATGGAAGCCCCTATATCAGTGTGCTGCTCTGCTTATGGACAAGAAGAGCAGCAGCAGCAAGAAGAAAGATGGCTCGGATTCGACCCTTGACATCAGGAAATCGACATCAATTCTCCGAAAGCTTCAGGAGAACAAGCTCAGGGAAGCTCTGGAGGAAGCATCAGAAGATGGATCACTATTTAAGTCCCAGGATATTGAAGCTGAGACAAACCAGGATGAAGGTCTTGGACGGTCCAGATCGCTTGCTAGGCTCCATGCCCAGAGAGAGTTCCTCAGAGCCACTGCTCTTGCAGCTGAGCGCTATTTCGAGTCTGAGGATGACATCCCTGAGTTCAATGAAGCGCTCTCTAAGTTCCTCACTATGTACCCAAAGTACAAGTCTTCGGAGAAGATTGATCAGCTGAGGAAGGATGAGTACGCACATTTAACCCCAAAGGTATGCCTAGACTACTGTGGATTTGGTCTTTTTTCGTACCTTCAGACATTGCATTATTGGGAATCTTCTACATTTAGCTTGTCTGAGATTACTGCAAATTTGAATAATCATGCTCTTTATGGTGGTGCTGAGAAAGGAACTGTGGAACATGATATAAAGACTAGGATTATGGATTATTTGAACATTCCTGAGAACGAGTATGGTCTCGTGTTTACTGTGAGTAGAGGGTCTGCTTTTAGATTGTTGGCTGAATCATACCCTTTTCATACAAACAAAAGGTTGTTAACCATGTTTGATTACGAAAGTCAATCTGTGAATTGGATGGCTCAGAGTGCCAGAGAGAAAGGTGCAAAGGTGTACAGTGCCTGGTTTAAGTGGCCAACCTTGAAACTCTGCTCCACTGATTTGAGAAAGCAGATTTCGAGCAAGAAGAAGAGGAAGAAGGATTCCGCAACTGGTCTTTTTGTGTTTCCGGTTCAGTCCAGAGTTACCGGGGCCAAGTATTCTTACCAGTGGATGGCACTGGCGCAGCAGAACAATTGGCATGTCATGCTTGATGCTGGGTCATTGGGTCCCAAGGACATGGATTCACTTGGGTTGTCCTTATTCAGGCCTGATTTTATTGTCACATCATTTTACAGGGTTTTTGGGTTTGATCCCACTGGATTTGGGTGCCTTTTGATTAAGAAATCTGTAATAGGATGCCTTCAAAGTCACTCAGGGTCTACTGGTTCTGGTATGGTGAAAATTACCCCTGAATACCCAATGTATTTGAGTGATTCTGTAGATGGTCTGGATAAGTTGACTGGAACTGAAGATGATGAAGTAGCTGGGGATGGTGAAAAAAGTTCTGATGCTCGCCAGGGATCACAGATGCCTGCCTTCTCTGGAGCATACACATCTGCTCAGGTGAGGGATGTTTTTGAGACTGAGATGGATCATGATAACAGCTCTGTCATAGATGTAACAAGTACCACCATATTTGAAGAAGCAGAGAGTATGTCAGTAGGGGAGATGATGAAGAGCCCTGTTTTCAGTGAAGATGAGTCATCGGATAATTCCATTTGGATTGATTTGGGTCAGAGCCCAATGGGTTCCGAAAATGGAAGCCAGATTTACAAACAGAAGATTTCCTCTCCTTTGCCTCCTTTTTGGTTTCTTGGCCGGAAGAATCATAAGCAACAATCCCCAAAACCTTCTTCTAAGATATATGGCAGCCCCATCTATGATGACAAAGAGATAAACTCGGGGACACATGATGACTCCCATGTGCTGTCATTTGACGCTGCTATCTTATCAGTTTCTATGGAATTGGACTCTGTCAAGGAGGTTCCTGAAGAAGAACAATTTGCACAGACAGGCTCCATCTCACAAAATGGCAAAAGTGGTTCTGATCATAATAGAGAGATCCAGGAAGAATGCGGCAGCAGCAATTCATTGCCTAATGGGACGGTGTTGAACTCTACAATGAATGGTTTTTGTCACAATGATTCAACTCCTACTTCTCGGCATCATAGACTAGAGAATGGGTCAACCGCTGCAAGTTGTGCAGAGATAAGAGAGAGCGCCATAAGAAGAGAAACTGAAGGTGAGTTTAGGTTGTTAGGGAGAAGAGAGGGGAGTAGATTCACTAATGGTAGACTTTTTGGTGTGGAAGAGAATGAGTCATCAAACAGGGGGAGAAGGGTATCCTTTAGCATAGAAGATAACCATAAAGATCATGCAAGCCAAAATTTTGAGACCGGAGAAATATCTGCAGCTAGTCTGGAAGATGAAGACTACACCAGTGATGGGGAATATGCTGATGGACAAGACTGGGACAGGAGGGAAGCTGAGATAACATGCCGGCATATTGATCATGTTAATATGTTGGGACTCAACAAGACCACCTCTCGACTACGATTTTTGATTAATTGGCTTGTGACCTCGTTGCTGCAATTAAGGTTGCCTGGTTCTGATGGAGACAACAGAAGGACTCTGGTACACATATATGGCCCAAAAATAAAATACGAGAGGGGTGCAGCTGTTGCTTTCAATTTGAGAGACCGAAATAGAGGGCTAATCAACCCAGAAGTTGTTCAGAAGCTGGCTGAAAAAGAAGGCATCTCTCTTGGCATTGGTTTTCTCAATCACATAAGAATTCTAGATGGCCCAAGACAGCAACATGGGGCTGTGCAACTTCAAGATACAACGCTGTGCAGGCCAATGGAAAATGGCAGAAAGGATAAAAAAGGTGGGTTCGTGCGGGTTGAGGTTGTAACAGCTTCTCTGGGTTTTCTCACCAACTTTGAGGATGTTTACAAGTTATGGGCTTTTGTGGCGAAGTTTCTAAATCCAGCCTTTATCAGAGAGGGTGGGCTGTCTACTGTTGAAGAGGAATCTGAGATAAAATCTGAAACATCTGTCACTGATTCTGTTCCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

958

Amino Acids

107.42

Weight (kDa)

5.52

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1122
AccB7I CCANNNNNTGG 1 cut(s) 967
AccI GTMKAC 3 cut(s) 1175, 2089, 2813
AciI CCGC 4 cut(s) 900, 1872, 1986, 2695
AclWI GGATC 5 cut(s) 193, 1100, 1324, 1395, 1852
AcoI YGGCCR 2 cut(s) 827, 1612
AcsI RAATTY 3 cut(s) 547, 2182, 2589
AcuI CTGAAG 5 cut(s) 122, 476, 1284, 1806, 2055
AfaI GTAC 7 cut(s) 380, 389, 431, 488, 809, 1423, 2433
AfeI AGCGCT 2 cut(s) 314, 357
AfiI CCNNNNNNNGG 3 cut(s) 967, 1059, 2241
AjnI CCWGG 6 cut(s) 201, 225, 815, 1311, 1860, 2398
AjuI GAANNNNNNNTTGG 2 cut(s) 1633, 1665
Alw26I GTCTC 6 cut(s) 212, 659, 1370, 2183, 2406, 2487
AlwI GGATC 5 cut(s) 193, 1100, 1324, 1395, 1852
AlwNI CAGNNNCTG 2 cut(s) 816, 2536
Ama87I CYCGRG 1 cut(s) 1696
Aor51HI AGCGCT 2 cut(s) 314, 357
AoxI GGCC 7 cut(s) 827, 945, 1061, 1612, 2443, 2599, 2651
ApoI RAATTY 3 cut(s) 547, 2182, 2589
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AseI ATTAAT 1 cut(s) 2361
Asp700I GAANNNNTTC 1 cut(s) 2526
AspLEI GCGC 4 cut(s) 315, 358, 979, 2018
AspS9I GGNCC 5 cut(s) 246, 945, 1022, 2444, 2600
AsuC2I CCSGG 1 cut(s) 943
AsuHPI GGTGA 5 cut(s) 1204, 1301, 1372, 2051, 2722
AvaI CYCGRG 1 cut(s) 1696
AvaII GGWCC 2 cut(s) 246, 1022
BalI TGGCCA 1 cut(s) 829
BanI GGYRCC 1 cut(s) 1122
BanII GRGCYC 2 cut(s) 1478, 1538
BarI GAAGNNNNNNTAC 2 cut(s) 413, 445
BauI CACGAG 1 cut(s) 656
BbsI GAAGAC 2 cut(s) 387, 2232
BbvCI CCTCAGC 1 cut(s) 416
BcgI CGANNNNNNTGC 2 cut(s) 2450, 2484
BciT130I CCWGG 6 cut(s) 203, 227, 817, 1313, 1862, 2400
BciVI GTATCC 1 cut(s) 2149
BclI TGATCA 3 cut(s) 409, 1843, 2305
BcnI CCSGG 1 cut(s) 943
BcoDI GTCTC 6 cut(s) 212, 659, 1370, 2183, 2406, 2487
BfaI CTAG 6 cut(s) 261, 458, 612, 1970, 2211, 2594
BfmI CTRYAG 2 cut(s) 1233, 2205
BfoI RGCGCY 3 cut(s) 316, 359, 2019
BfuI GTATCC 1 cut(s) 2149
BlpI GCTNAGC 1 cut(s) 309
Bme1390I CCNGG 7 cut(s) 203, 227, 817, 943, 1313, 1862, 2400
Bme18I GGWCC 2 cut(s) 246, 1022
BmeT110I CYCGRG 1 cut(s) 1696
BmgT120I GGNCC 5 cut(s) 246, 945, 1022, 2444, 2600
BmiI GGNNCC 8 cut(s) 266, 946, 1023, 1024, 1124, 1546, 1782, 1813
BmrFI CCNGG 7 cut(s) 203, 227, 817, 943, 1313, 1862, 2400
BmrI ACTGGG 1 cut(s) 2275
BmsI GCATC 7 cut(s) 182, 997, 1142, 1294, 1314, 1969, 2562
BmuI ACTGGG 1 cut(s) 2275
BpiI GAAGAC 2 cut(s) 387, 2232
BplI GAGNNNNNCTC 4 cut(s) 270, 302, 1679, 1711
BpmI CTGGAG 2 cut(s) 185, 1359
Bpu10I CCTNAGC 3 cut(s) 152, 416, 1356
Bpu1102I GCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 943
BsaI GGTCTC 3 cut(s) 659, 2183, 2487
BsaJI CCNNGG 4 cut(s) 201, 942, 1026, 1312
BsaWI WCCGGW 2 cut(s) 922, 2192
Bsc4I CCNNNNNNNGG 3 cut(s) 967, 1059, 2241
Bse118I RCCGGY 1 cut(s) 2295
Bse1I ACTGG 8 cut(s) 910, 961, 978, 1117, 1183, 1261, 2235, 2270
Bse3DI GCAATG 2 cut(s) 497, 1886
BseBI CCWGG 6 cut(s) 203, 227, 817, 1313, 1862, 2400
BseDI CCNNGG 4 cut(s) 201, 942, 1026, 1312
BseLI CCNNNNNNNGG 3 cut(s) 967, 1059, 2241
BseMI GCAATG 2 cut(s) 497, 1886
BseNI ACTGG 8 cut(s) 910, 961, 978, 1117, 1183, 1261, 2235, 2270
BseYI CCCAGC 2 cut(s) 1010, 1280
BsgI GTGCAG 3 cut(s) 2019, 2490, 2668
BshFI GGCC 7 cut(s) 829, 947, 1063, 1614, 2445, 2601, 2653
BshNI GGYRCC 1 cut(s) 1122
BsiHKCI CYCGRG 1 cut(s) 1696
BsiSI CCGG 5 cut(s) 923, 942, 1615, 2193, 2296
BslFI GGGAC 6 cut(s) 184, 1008, 1714, 1912, 2282, 2337
BslI CCNNNNNNNGG 3 cut(s) 967, 1059, 2241
BsmAI GTCTC 6 cut(s) 212, 659, 1370, 2183, 2406, 2487
BsmFI GGGAC 6 cut(s) 184, 1008, 1714, 1912, 2282, 2337
BsmI GAATGC 1 cut(s) 1874
BsnI GGCC 7 cut(s) 829, 947, 1063, 1614, 2445, 2601, 2653
Bso31I GGTCTC 3 cut(s) 659, 2183, 2487
BsoBI CYCGRG 1 cut(s) 1696
Bsp1286I GDGCHC 2 cut(s) 1478, 1538
Bsp1407I TGTACA 1 cut(s) 807
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 4 cut(s) 900, 1872, 1986, 2695
BspANI GGCC 7 cut(s) 829, 947, 1063, 1614, 2445, 2601, 2653
BspHI TCATGA 1 cut(s) 1390
BspLI GGNNCC 8 cut(s) 266, 946, 1023, 1024, 1124, 1546, 1782, 1813
BspMAI CTGCAG 1 cut(s) 2209
BspPI GGATC 5 cut(s) 193, 1100, 1324, 1395, 1852
BspQI GCTCTTC 2 cut(s) 53, 1466
BspT107I GGYRCC 1 cut(s) 1122
BspTNI GGTCTC 3 cut(s) 659, 2183, 2487
BsrDI GCAATG 2 cut(s) 497, 1886
BsrFI RCCGGY 1 cut(s) 2295
BsrGI TGTACA 1 cut(s) 807
BsrI ACTGG 8 cut(s) 910, 961, 978, 1117, 1183, 1261, 2235, 2270
BssAI RCCGGY 1 cut(s) 2295
BssECI CCNNGG 4 cut(s) 201, 942, 1026, 1312
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 6 cut(s) 203, 227, 817, 1313, 1862, 2400
Bst4CI ACNGT 7 cut(s) 246, 467, 592, 667, 812, 1903, 2818
Bst6I CTCTTC 7 cut(s) 53, 878, 1466, 2020, 2056, 2100, 2817
BstAPI GCANNNNNTGC 3 cut(s) 1000, 1997, 2477
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 7 cut(s) 258, 1309, 1329, 2176, 2297, 2538, 2651
BstENI CCTNNNNNAGG 1 cut(s) 1057
BstH2I RGCGCY 3 cut(s) 316, 359, 2019
BstHHI GCGC 4 cut(s) 315, 358, 979, 2018
BstMAI GTCTC 6 cut(s) 212, 659, 1370, 2183, 2406, 2487
BstNI CCWGG 6 cut(s) 203, 227, 817, 1313, 1862, 2400
BstNSI RCATGY 2 cut(s) 998, 2295
BstSCI CCNGG 7 cut(s) 201, 225, 815, 941, 1311, 1860, 2398
BstSFI CTRYAG 2 cut(s) 1233, 2205
BstV2I GAAGAC 2 cut(s) 387, 2232
BstX2I RGATCY 1 cut(s) 1857
BstXI CCANNNNNNTGG 1 cut(s) 1033
BstYI RGATCY 1 cut(s) 1857
BsuI GTATCC 1 cut(s) 2149
BsuRI GGCC 7 cut(s) 829, 947, 1063, 1614, 2445, 2601, 2653
BtsI GCAGTG 1 cut(s) 294
Cac8I GCNNGC 7 cut(s) 258, 1309, 1329, 2176, 2297, 2538, 2651
CaiI CAGNNNCTG 2 cut(s) 816, 2536
CciI TCATGA 1 cut(s) 1390
CfoI GCGC 4 cut(s) 315, 358, 979, 2018
Cfr10I RCCGGY 1 cut(s) 2295
Cfr13I GGNCC 5 cut(s) 246, 945, 1022, 2444, 2600
CseI GACGC 1 cut(s) 1742
Csp6I GTAC 7 cut(s) 379, 388, 430, 487, 808, 1422, 2432
CspCI CAANNNNNGTGG 6 cut(s) 283, 318, 1099, 1134, 1414, 1449
CviQI GTAC 7 cut(s) 379, 388, 430, 487, 808, 1422, 2432
EaeI YGGCCR 2 cut(s) 827, 1612
Eam1104I CTCTTC 7 cut(s) 53, 878, 1466, 2020, 2056, 2100, 2817
EarI CTCTTC 7 cut(s) 53, 878, 1466, 2020, 2056, 2100, 2817
Eco130I CCWWGG 1 cut(s) 1026
Eco147I AGGCCT 1 cut(s) 1063
Eco24I GRGCYC 2 cut(s) 1478, 1538
Eco31I GGTCTC 3 cut(s) 659, 2183, 2487
Eco47I GGWCC 2 cut(s) 246, 1022
Eco47III AGCGCT 2 cut(s) 314, 357
Eco57I CTGAAG 5 cut(s) 122, 476, 1284, 1806, 2055
Eco88I CYCGRG 1 cut(s) 1696
EcoNI CCTNNNNNAGG 1 cut(s) 1057
EcoO109I RGGNCCY 1 cut(s) 1022
EcoRI GAATTC 1 cut(s) 2589
EcoRII CCWGG 6 cut(s) 201, 225, 815, 1311, 1860, 2398
EcoT14I CCWWGG 1 cut(s) 1026
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 1478, 1538
ErhI CCWWGG 1 cut(s) 1026
FaqI GGGAC 6 cut(s) 184, 1008, 1714, 1912, 2282, 2337
FauI CCCGC 1 cut(s) 2688
FbaI TGATCA 3 cut(s) 409, 1843, 2305
FblI GTMKAC 3 cut(s) 1175, 2089, 2813
FriOI GRGCYC 2 cut(s) 1478, 1538
FspBI CTAG 6 cut(s) 261, 458, 612, 1970, 2211, 2594
GlaI GCGC 4 cut(s) 314, 357, 978, 2017
GsaI CCCAGC 2 cut(s) 1014, 1284
GsuI CTGGAG 2 cut(s) 185, 1359
HaeII RGCGCY 3 cut(s) 316, 359, 2019
HaeIII GGCC 7 cut(s) 829, 947, 1063, 1614, 2445, 2601, 2653
HapII CCGG 5 cut(s) 923, 942, 1615, 2193, 2296
HgaI GACGC 1 cut(s) 1742
HhaI GCGC 4 cut(s) 315, 358, 979, 2018
Hin6I GCGC 4 cut(s) 313, 356, 977, 2016
HinP1I GCGC 4 cut(s) 313, 356, 977, 2016
HincII GTYRAC 3 cut(s) 735, 1254, 1983
HindII GTYRAC 3 cut(s) 735, 1254, 1983
HindIII AAGCTT 1 cut(s) 134
HpaI GTTAAC 1 cut(s) 735
HpaII CCGG 5 cut(s) 923, 942, 1615, 2193, 2296
HphI GGTGA 5 cut(s) 1204, 1301, 1372, 2051, 2722
HpyCH4III ACNGT 7 cut(s) 246, 467, 592, 667, 812, 1903, 2818
HspAI GCGC 4 cut(s) 313, 356, 977, 2016
KflI GGGWCCC 1 cut(s) 1022
KroI GCCGGC 1 cut(s) 2295
KroNI GCCGGC 1 cut(s) 2297
Ksp22I TGATCA 3 cut(s) 409, 1843, 2305
KspAI GTTAAC 1 cut(s) 735
LguI GCTCTTC 2 cut(s) 53, 1466
LmnI GCTCC 4 cut(s) 270, 851, 1340, 1817
LweI GCATC 7 cut(s) 182, 997, 1142, 1294, 1314, 1969, 2562
MaeI CTAG 6 cut(s) 261, 458, 612, 1970, 2211, 2594
MaeIII GTNAC 8 cut(s) 937, 1075, 1163, 1414, 1931, 2371, 2707, 2854
MfeI CAATTG 1 cut(s) 988
MflI RGATCY 1 cut(s) 1857
MhlI GDGCHC 2 cut(s) 1478, 1538
MlsI TGGCCA 1 cut(s) 829
MluNI TGGCCA 1 cut(s) 829
MlyI GAGTC 7 cut(s) 332, 1505, 1706, 1760, 2123, 2319, 2419
Mox20I TGGCCA 1 cut(s) 829
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 2295
MroXI GAANNNNTTC 1 cut(s) 2526
MscI TGGCCA 1 cut(s) 829
MseI TTAA 8 cut(s) 195, 440, 734, 822, 1134, 2313, 2361, 2390
MslI CAYNNNNRTG 1 cut(s) 2439
Msp20I TGGCCA 1 cut(s) 829
MspA1I CMGCKG 4 cut(s) 308, 415, 1988, 2474
MspI CCGG 5 cut(s) 923, 942, 1615, 2193, 2296
MspR9I CCNGG 7 cut(s) 203, 227, 817, 943, 1313, 1862, 2400
MunI CAATTG 1 cut(s) 988
Mva1269I GAATGC 1 cut(s) 1874
MvaI CCWGG 6 cut(s) 203, 227, 817, 1313, 1862, 2400
NaeI GCCGGC 1 cut(s) 2297
NciI CCSGG 1 cut(s) 943
NgoMIV GCCGGC 1 cut(s) 2295
NlaIV GGNNCC 8 cut(s) 266, 946, 1023, 1024, 1124, 1546, 1782, 1813
NmeAIII GCCGAG 1 cut(s) 1936
NmuCI GTSAC 5 cut(s) 1075, 1163, 1931, 2371, 2854
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 998, 2295
PagI TCATGA 1 cut(s) 1390
PceI AGGCCT 1 cut(s) 1063
PciSI GCTCTTC 2 cut(s) 53, 1466
PctI GAATGC 1 cut(s) 1874
PdiI GCCGGC 1 cut(s) 2297
PdmI GAANNNNTTC 1 cut(s) 2526
PflFI GACNNNGTC 1 cut(s) 1769
PflMI CCANNNNNTGG 1 cut(s) 967
PfoI TCCNGGA 1 cut(s) 1860
PleI GAGTC 7 cut(s) 331, 1504, 1706, 1760, 2122, 2319, 2419
PpsI GAGTC 7 cut(s) 331, 1504, 1706, 1760, 2122, 2319, 2419
PpuMI RGGWCCY 1 cut(s) 1022
PshBI ATTAAT 1 cut(s) 2361
Psp5II RGGWCCY 1 cut(s) 1022
Psp6I CCWGG 6 cut(s) 201, 225, 815, 1311, 1860, 2398
PspFI CCCAGC 2 cut(s) 1010, 1280
PspGI CCWGG 6 cut(s) 201, 225, 815, 1311, 1860, 2398
PspN4I GGNNCC 8 cut(s) 266, 946, 1023, 1024, 1124, 1546, 1782, 1813
PspPI GGNCC 5 cut(s) 246, 945, 1022, 2444, 2600
PspPPI RGGWCCY 1 cut(s) 1022
PstI CTGCAG 1 cut(s) 2209
PstNI CAGNNNCTG 2 cut(s) 816, 2536
PsuI RGATCY 1 cut(s) 1857
PsyI GACNNNGTC 1 cut(s) 1769
PvuII CAGCTG 3 cut(s) 308, 415, 2474
RsaI GTAC 7 cut(s) 380, 389, 431, 488, 809, 1423, 2433
RsaNI GTAC 7 cut(s) 379, 388, 430, 487, 808, 1422, 2432
RseI CAYNNNNRTG 1 cut(s) 2439
SapI GCTCTTC 2 cut(s) 53, 1466
SaqAI TTAA 8 cut(s) 195, 440, 734, 822, 1134, 2313, 2361, 2390
Sau96I GGNCC 5 cut(s) 246, 945, 1022, 2444, 2600
SchI GAGTC 7 cut(s) 332, 1505, 1706, 1760, 2123, 2319, 2419
ScrFI CCNGG 7 cut(s) 203, 227, 817, 943, 1313, 1862, 2400
SduI GDGCHC 2 cut(s) 1478, 1538
SfaNI GCATC 7 cut(s) 182, 997, 1142, 1294, 1314, 1969, 2562
SfcI CTRYAG 2 cut(s) 1233, 2205
SinI GGWCC 2 cut(s) 246, 1022
SmiMI CAYNNNNRTG 1 cut(s) 2439
SseBI AGGCCT 1 cut(s) 1063
SsiI CCGC 4 cut(s) 900, 1872, 1986, 2695
SspMI CTAG 6 cut(s) 261, 458, 612, 1970, 2211, 2594
StuI AGGCCT 1 cut(s) 1063
StyD4I CCNGG 7 cut(s) 201, 225, 815, 941, 1311, 1860, 2398
StyI CCWWGG 1 cut(s) 1026
TaaI ACNGT 7 cut(s) 246, 467, 592, 667, 812, 1903, 2818
TaqI TCGA 5 cut(s) 95, 116, 321, 872, 2344
TaqII GACCGA 1 cut(s) 2511
TatI WGTACW 2 cut(s) 387, 807
TauI GCSGC 1 cut(s) 1875
Tru1I TTAA 8 cut(s) 195, 440, 734, 822, 1134, 2313, 2361, 2390
Tru9I TTAA 8 cut(s) 195, 440, 734, 822, 1134, 2313, 2361, 2390
TseFI GTSAC 5 cut(s) 1075, 1163, 1931, 2371, 2854
Tsp45I GTSAC 5 cut(s) 1075, 1163, 1931, 2371, 2854
TspDTI ATGAA 8 cut(s) 246, 366, 704, 1287, 1484, 1875, 1934, 2238
Tth111I GACNNNGTC 1 cut(s) 1769
Van91I CCANNNNNTGG 1 cut(s) 967
VpaK11BI GGWCC 2 cut(s) 246, 1022
VspI ATTAAT 1 cut(s) 2361
XagI CCTNNNNNAGG 1 cut(s) 1057
XapI RAATTY 3 cut(s) 547, 2182, 2589
XbaI TCTAGA 1 cut(s) 2593
XceI RCATGY 2 cut(s) 998, 2295
XmiI GTMKAC 3 cut(s) 1175, 2089, 2813
XmnI GAANNNNTTC 1 cut(s) 2526
XspI CTAG 6 cut(s) 261, 458, 612, 1970, 2211, 2594
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.