RLG00000030154

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000123
Physical Location & Seq
Forward (+)
56528235 .. 56529034
800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030154

Sequence Viewer

Length: 345 bp
ATGTGTAACGAGAAAGCCTTAACGCTAATCGGACAAGCGTTGGGAGTTGTTGTTCTGGTTGATCAGGGAGCGGTGAAGAGAAAAGATGCGGTTCAGCGGATTTGGGTGATTCAGGATGTTCGCCGAAGAAATTTGGCGCGACGGCAGTTTGAGTTTTCACCGACGGTCTCGGTGATGGTGGAGCTGCATTATGAAAAGTGTCATGGCCTTTATGCTGCGTGTGGGTTCTTCGGGCATGGCGGTGAGCTCTATGACAAGCGGCTGAAGGCGGAGGTGACATCATTGGAGGCGCCGGGCCGAGATGCAGTGGGTTGTACCAGTTTAGGACTGGAAAACCATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.64

Weight (kDa)

8.41

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 71
AccII CGCG 1 cut(s) 139
AciI CCGC 6 cut(s) 71, 89, 97, 240, 259, 269
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 316
AloI GAACNNNNNNTCC 2 cut(s) 36, 68
AluBI AGCT 2 cut(s) 184, 247
AluI AGCT 2 cut(s) 184, 247
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 172
AoxI GGCC 2 cut(s) 205, 295
ApeKI GCWGC 2 cut(s) 184, 215
ApoI RAATTY 1 cut(s) 130
AspLEI GCGC 2 cut(s) 139, 292
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 6 cut(s) 85, 118, 150, 184, 254, 286
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 171, 202
BccI CCATC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 158
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 3 cut(s) 185, 216, 260
BlsI GCNGC 3 cut(s) 186, 217, 261
Bme1390I CCNGG 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 76, 292
BpuMI CCSGG 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse1I ACTGG 2 cut(s) 318, 333
BseGI GGATG 1 cut(s) 121
BseNI ACTGG 2 cut(s) 318, 333
BseXI GCAGC 2 cut(s) 171, 202
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 207, 297
BshNI GGYRCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 2 cut(s) 207, 297
Bso31I GGTCTC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 6 cut(s) 71, 89, 97, 240, 259, 269
BspANI GGCC 2 cut(s) 207, 297
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 71
BsrI ACTGG 2 cut(s) 318, 333
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 290
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 2 cut(s) 139, 292
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 292
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 171, 202
BsuRI GGCC 2 cut(s) 207, 297
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
CfoI GCGC 2 cut(s) 139, 292
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 315
CviAII CATG 2 cut(s) 203, 236
CviJI RGCY 6 cut(s) 17, 184, 207, 247, 262, 297
CviKI_1 RGCY 6 cut(s) 17, 184, 207, 247, 262, 297
CviQI GTAC 1 cut(s) 315
DinI GGCGCC 1 cut(s) 291
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
FaeI CATG 2 cut(s) 206, 239
FaiI YATR 6 cut(s) 192, 204, 213, 237, 252, 339
FatI CATG 2 cut(s) 202, 235
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 185, 216, 260
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 185, 216, 260
FspBI CTAG 1 cut(s) 343
GlaI GCGC 2 cut(s) 138, 291
GluI GCNGC 3 cut(s) 185, 216, 260
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 2 cut(s) 207, 297
HapII CCGG 1 cut(s) 293
HhaI GCGC 2 cut(s) 139, 292
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 2 cut(s) 206, 239
Hin6I GCGC 2 cut(s) 137, 290
HinP1I GCGC 2 cut(s) 137, 290
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 293
HphI GGTGA 6 cut(s) 85, 118, 150, 184, 254, 286
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 2 cut(s) 144, 166
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 187, 305
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 2 cut(s) 206, 239
HspAI GCGC 2 cut(s) 137, 290
KasI GGCGCC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 68, 181
LpnPI CCDG 6 cut(s) 41, 50, 98, 306, 314, 331
Lsp1109I GCAGC 2 cut(s) 171, 202
LweI GCATC 2 cut(s) 76, 292
MaeI CTAG 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 5, 274
MalI GATC 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 71
MboI GATC 1 cut(s) 61
MboII GAAGA 3 cut(s) 88, 138, 220
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 130
Mly113I GGCGCC 1 cut(s) 290
MnlI CCTC 2 cut(s) 265, 280
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 139
NarI GGCGCC 1 cut(s) 290
NciI CCSGG 1 cut(s) 294
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 206, 239
NlaIV GGNNCC 1 cut(s) 291
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 186, 217, 261
PluTI GGCGCC 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 295
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 185, 216, 260
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 249
SetI ASST 4 cut(s) 186, 249, 276, 344
SfaNI GCATC 2 cut(s) 76, 292
SfoI GGCGCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 1 cut(s) 130
SsiI CCGC 6 cut(s) 71, 89, 97, 240, 259, 269
SspDI GGCGCC 1 cut(s) 289
SspMI CTAG 1 cut(s) 343
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 166
TasI AATT 1 cut(s) 130
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 184, 215
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 312
XapI RAATTY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.