Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 216 |
| AatII | GACGTC | 1 cut(s) | 112 |
| AciI | CCGC | 6 cut(s) | 17, 44, 66, 239, 392, 602 |
| AclWI | GGATC | 7 cut(s) | 73, 80, 86, 404, 417, 427, 539 |
| AcyI | GRCGYC | 1 cut(s) | 109 |
| AfaI | GTAC | 4 cut(s) | 383, 444, 473, 515 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 166, 565 |
| AgsI | TTSAA | 3 cut(s) | 166, 356, 590 |
| AluBI | AGCT | 1 cut(s) | 643 |
| AluI | AGCT | 1 cut(s) | 643 |
| AlwI | GGATC | 7 cut(s) | 73, 80, 86, 404, 417, 427, 539 |
| AoxI | GGCC | 1 cut(s) | 464 |
| ApeKI | GCWGC | 2 cut(s) | 201, 277 |
| AspS9I | GGNCC | 1 cut(s) | 465 |
| AsuHPI | GGTGA | 3 cut(s) | 64, 412, 442 |
| BamHI | GGATCC | 2 cut(s) | 78, 409 |
| BanII | GRGCYC | 1 cut(s) | 463 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 297, 329 |
| BbvI | GCAGC | 2 cut(s) | 213, 264 |
| BccI | CCATC | 4 cut(s) | 242, 391, 589, 621 |
| BfaI | CTAG | 1 cut(s) | 624 |
| BglII | AGATCT | 1 cut(s) | 583 |
| BisI | GCNGC | 5 cut(s) | 45, 202, 278, 393, 603 |
| BlsI | GCNGC | 5 cut(s) | 46, 203, 279, 394, 604 |
| BmgT120I | GGNCC | 1 cut(s) | 465 |
| BmiI | GGNNCC | 2 cut(s) | 80, 411 |
| BoxI | GACNNNNGTC | 1 cut(s) | 188 |
| BpmI | CTGGAG | 1 cut(s) | 506 |
| BpuEI | CTTGAG | 1 cut(s) | 308 |
| BsaHI | GRCGYC | 1 cut(s) | 109 |
| BsaJI | CCNNGG | 2 cut(s) | 206, 559 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 497, 527 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 166, 565 |
| Bse1I | ACTGG | 1 cut(s) | 160 |
| BseDI | CCNNGG | 2 cut(s) | 206, 559 |
| BseGI | GGATG | 1 cut(s) | 600 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 166, 565 |
| BseNI | ACTGG | 1 cut(s) | 160 |
| BseRI | GAGGAG | 2 cut(s) | 152, 281 |
| BseXI | GCAGC | 2 cut(s) | 213, 264 |
| BsgI | GTGCAG | 1 cut(s) | 263 |
| Bsh1285I | CGRYCG | 1 cut(s) | 76 |
| BshFI | GGCC | 1 cut(s) | 466 |
| BsiEI | CGRYCG | 1 cut(s) | 76 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 166, 565 |
| BsnI | GGCC | 1 cut(s) | 466 |
| Bsp1286I | GDGCHC | 1 cut(s) | 463 |
| Bsp143I | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| Bsp19I | CCATGG | 1 cut(s) | 559 |
| BspACI | CCGC | 6 cut(s) | 17, 44, 66, 239, 392, 602 |
| BspANI | GGCC | 1 cut(s) | 466 |
| BspLI | GGNNCC | 2 cut(s) | 80, 411 |
| BspPI | GGATC | 7 cut(s) | 73, 80, 86, 404, 417, 427, 539 |
| BsrI | ACTGG | 1 cut(s) | 160 |
| BssECI | CCNNGG | 2 cut(s) | 206, 559 |
| BssMI | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| BssNI | GRCGYC | 1 cut(s) | 109 |
| BssT1I | CCWWGG | 2 cut(s) | 206, 559 |
| Bst4CI | ACNGT | 1 cut(s) | 104 |
| BstACI | GRCGYC | 1 cut(s) | 109 |
| BstDSI | CCRYGG | 1 cut(s) | 559 |
| BstF5I | GGATG | 1 cut(s) | 600 |
| BstKTI | GATC | 8 cut(s) | 76, 81, 88, 388, 412, 435, 534, 586 |
| BstMBI | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| BstMCI | CGRYCG | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 29 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 188 |
| BstV1I | GCAGC | 2 cut(s) | 213, 264 |
| BstX2I | RGATCY | 4 cut(s) | 78, 409, 531, 583 |
| BstYI | RGATCY | 4 cut(s) | 78, 409, 531, 583 |
| BsuRI | GGCC | 1 cut(s) | 466 |
| BtgI | CCRYGG | 1 cut(s) | 559 |
| BtgZI | GCGATG | 1 cut(s) | 410 |
| BtsCI | GGATG | 1 cut(s) | 600 |
| BtsIMutI | CAGTG | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 1 cut(s) | 465 |
| Csp6I | GTAC | 4 cut(s) | 382, 443, 472, 514 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 526, 561 |
| CviAII | CATG | 5 cut(s) | 33, 83, 188, 437, 560 |
| CviQI | GTAC | 4 cut(s) | 382, 443, 472, 514 |
| DpnI | GATC | 8 cut(s) | 75, 80, 87, 387, 411, 434, 533, 585 |
| DpnII | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| EciI | GGCGGA | 1 cut(s) | 254 |
| Eco130I | CCWWGG | 2 cut(s) | 206, 559 |
| Eco24I | GRGCYC | 1 cut(s) | 463 |
| EcoT14I | CCWWGG | 2 cut(s) | 206, 559 |
| EcoT38I | GRGCYC | 1 cut(s) | 463 |
| ErhI | CCWWGG | 2 cut(s) | 206, 559 |
| FaeI | CATG | 5 cut(s) | 36, 86, 191, 440, 563 |
| FatI | CATG | 5 cut(s) | 32, 82, 187, 436, 559 |
| Fnu4HI | GCNGC | 5 cut(s) | 45, 202, 278, 393, 603 |
| FokI | GGATG | 1 cut(s) | 607 |
| FriOI | GRGCYC | 1 cut(s) | 463 |
| Fsp4HI | GCNGC | 5 cut(s) | 45, 202, 278, 393, 603 |
| FspBI | CTAG | 1 cut(s) | 624 |
| GluI | GCNGC | 5 cut(s) | 45, 202, 278, 393, 603 |
| GsuI | CTGGAG | 1 cut(s) | 506 |
| HaeIII | GGCC | 1 cut(s) | 466 |
| Hin1I | GRCGYC | 1 cut(s) | 109 |
| Hin1II | CATG | 5 cut(s) | 36, 86, 191, 440, 563 |
| HinfI | GANTC | 4 cut(s) | 55, 339, 415, 636 |
| HphI | GGTGA | 3 cut(s) | 64, 412, 442 |
| Hpy166II | GTNNAC | 1 cut(s) | 107 |
| Hpy188I | TCNGA | 7 cut(s) | 60, 78, 123, 414, 420, 453, 620 |
| Hpy188III | TCNNGA | 1 cut(s) | 587 |
| Hpy8I | GTNNAC | 1 cut(s) | 107 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 453 |
| HpyAV | CCTTC | 3 cut(s) | 99, 400, 584 |
| HpyCH4III | ACNGT | 1 cut(s) | 104 |
| HpyCH4IV | ACGT | 2 cut(s) | 109, 448 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 280, 537 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 29 |
| HpySE526I | ACGT | 2 cut(s) | 109, 448 |
| Hsp92I | GRCGYC | 1 cut(s) | 109 |
| Hsp92II | CATG | 5 cut(s) | 36, 86, 191, 440, 563 |
| Kzo9I | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| LpnPI | CCDG | 5 cut(s) | 42, 158, 173, 470, 551 |
| Lsp1109I | GCAGC | 2 cut(s) | 213, 264 |
| MaeI | CTAG | 1 cut(s) | 624 |
| MaeII | ACGT | 2 cut(s) | 109, 448 |
| MaeIII | GTNAC | 2 cut(s) | 304, 575 |
| MalI | GATC | 8 cut(s) | 75, 80, 87, 387, 411, 434, 533, 585 |
| MboI | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| MflI | RGATCY | 4 cut(s) | 78, 409, 531, 583 |
| MhlI | GDGCHC | 1 cut(s) | 463 |
| MluCI | AATT | 1 cut(s) | 220 |
| MlyI | GAGTC | 1 cut(s) | 348 |
| MmeI | TCCRAC | 1 cut(s) | 431 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 29 |
| NcoI | CCATGG | 1 cut(s) | 559 |
| NdeII | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| NlaIII | CATG | 5 cut(s) | 36, 86, 191, 440, 563 |
| NlaIV | GGNNCC | 2 cut(s) | 80, 411 |
| NmeAIII | GCCGAG | 1 cut(s) | 442 |
| NmuCI | GTSAC | 1 cut(s) | 575 |
| PfeI | GAWTC | 3 cut(s) | 55, 415, 636 |
| PkrI | GCNGC | 5 cut(s) | 46, 203, 279, 394, 604 |
| Ple19I | CGATCG | 1 cut(s) | 76 |
| PleI | GAGTC | 1 cut(s) | 347 |
| PpsI | GAGTC | 1 cut(s) | 347 |
| PshAI | GACNNNNGTC | 1 cut(s) | 188 |
| PsiI | TTATAA | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 2 cut(s) | 80, 411 |
| PspPI | GGNCC | 1 cut(s) | 465 |
| PsuI | RGATCY | 4 cut(s) | 78, 409, 531, 583 |
| PvuI | CGATCG | 1 cut(s) | 76 |
| RsaI | GTAC | 4 cut(s) | 383, 444, 473, 515 |
| RsaNI | GTAC | 4 cut(s) | 382, 443, 472, 514 |
| SatI | GCNGC | 5 cut(s) | 45, 202, 278, 393, 603 |
| Sau3AI | GATC | 8 cut(s) | 73, 78, 85, 385, 409, 432, 531, 583 |
| Sau96I | GGNCC | 1 cut(s) | 465 |
| SchI | GAGTC | 1 cut(s) | 348 |
| SduI | GDGCHC | 1 cut(s) | 463 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| Sse9I | AATT | 1 cut(s) | 220 |
| SsiI | CCGC | 6 cut(s) | 17, 44, 66, 239, 392, 602 |
| SspMI | CTAG | 1 cut(s) | 624 |
| StyI | CCWWGG | 2 cut(s) | 206, 559 |
| TaaI | ACNGT | 1 cut(s) | 104 |
| TaiI | ACGT | 2 cut(s) | 112, 451 |
| TaqI | TCGA | 1 cut(s) | 639 |
| TasI | AATT | 1 cut(s) | 220 |
| TatI | WGTACW | 1 cut(s) | 442 |
| TauI | GCSGC | 3 cut(s) | 47, 395, 605 |
| TfiI | GAWTC | 3 cut(s) | 55, 415, 636 |
| TscAI | CASTG | 1 cut(s) | 107 |
| TseFI | GTSAC | 1 cut(s) | 575 |
| TseI | GCWGC | 2 cut(s) | 201, 277 |
| Tsp45I | GTSAC | 1 cut(s) | 575 |
| TspDTI | ATGAA | 1 cut(s) | 348 |
| TspRI | CASTG | 1 cut(s) | 107 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 194 |
| XspI | CTAG | 1 cut(s) | 624 |
| ZraI | GACGTC | 1 cut(s) | 110 |