Rmu_sc0003605.1_g000027

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003605.1
OG0000123
Physical Location & Seq
Forward (+)
121498 .. 125003
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003605.1_g000027.1.cds

Sequence Viewer

Length: 1464 bp
ctggaaggagcgaaagaggccgtgagcctggttacggggggcaatgtaatccaggaccccttctgttacttgtgtggccgctttctctctccgcagaaacccatcgtgatcctattgctcagggtggtggtctctgggatatgggggcttaaggagaggatcttgatccaggaggacgaaggtggagtttttgtcttccaattcaaggacaaggaggagaagaaccgtgtccttaatgggggaccatggttttacaacagttcgttgttggtgctggcggactatgacggcattagctcgttggaggtggggtctcttcatcatctgaaggtttgggtggaggtgaaggggttgagaatgcccatgcggaatgagcgtgccctaaacctcctcgggaatgatctaggggtttttgttcgggctggcctgacggaggtgcagcgcaagaatccaatccagagggtcttagtgatccacgatgtgcgactgaggaatttgggccctgcgcatgtactgcttttcgccggacgtctcgatgcttttggaattccagagcaacatgggtctcagcagcatgggtggggatcggtgttgctggaaaaggagctagaggtgaggcaggccggcgtggagagtgatctagaggcgaccccgactttctcggtgggaaaccctaaattcagtttagggttgactgctgggttgggtttgactggaataaagggagttaggctgggttttgtgaaagctattgtgcccaatgctgattctgagggctggaacccaactagtgcattgggtatgcacaagacttgggaaattgatttgatccaggataggaagatactctatttggcgcccaaaaagggtcgtcctcatggtcatcggaataagctcaagcaggtgattatgactgctgttgctaaggagttggaggaggttcccctaccccaagagccctcatattctagcacctacagtgcacacataaaagctctcagtcctaggagcccagaaccggaggcgaaaccaccagaaccggccatcggaaatttcaaactggccctgttagccttgccagacccctgcacagcccctgccgagacctaccgagaagccttgcacaacccctgccgagacctgcctagaagccccgcacagcccctgctcagatctgccgagaagcctatttcaagtgatgtgcgccagcatcttaaggctgatgggatcctgaatacgatccaagagccaagtcataacgtgcttactcctcaacaagctgccgcttttgaagcgaagagaactacaagagaggcgaatgaagctaaagccataattctcatgacaaggcacatgaatgatgaactccagaatgagtaccttaatgaggaagacctaagaaaactctgggtagaactcgagcagcgttttgacaacattcgtaactccctgcttccagactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

487

Amino Acids

54.16

Weight (kDa)

7.01

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 892
AatII GACGTC 1 cut(s) 532
Acc16I TGCGCA 1 cut(s) 507
Acc36I ACCTGC 2 cut(s) 892, 1149
AccB1I GGYRCC 1 cut(s) 856
AciI CCGC 6 cut(s) 79, 92, 278, 367, 1155, 1284
AclWI GGATC 9 cut(s) 103, 160, 167, 466, 592, 823, 1222, 1234, 1235
AcoI YGGCCR 2 cut(s) 76, 1041
AcsI RAATTY 4 cut(s) 493, 546, 677, 1051
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 2 cut(s) 529, 857
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 2 cut(s) 513, 1379
AfiI CCNNNNNNNGG 8 cut(s) 34, 205, 238, 433, 866, 1018, 1046, 1387
AflII CTTAAG 2 cut(s) 149, 1214
AgsI TTSAA 4 cut(s) 205, 1057, 1194, 1292
AhlI ACTAGT 1 cut(s) 788
AjnI CCWGG 4 cut(s) 27, 51, 168, 831
AluBI AGCT 7 cut(s) 297, 607, 749, 895, 995, 1280, 1325
AluI AGCT 7 cut(s) 297, 607, 749, 895, 995, 1280, 1325
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 6 cut(s) 136, 318, 536, 570, 1097, 1131
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 9 cut(s) 103, 160, 167, 466, 592, 823, 1222, 1234, 1235
AlwNI CAGNNNCTG 2 cut(s) 1097, 1165
Ama87I CYCGRG 2 cut(s) 392, 1418
AoxI GGCC 7 cut(s) 18, 76, 424, 499, 621, 1041, 1062
ApaI GGGCCC 1 cut(s) 503
ApaLI GTGCAC 1 cut(s) 981
ApeKI GCWGC 4 cut(s) 439, 571, 1280, 1423
ApoI RAATTY 4 cut(s) 493, 546, 677, 1051
AspA2I CCTAGG 1 cut(s) 1004
AspLEI GCGC 4 cut(s) 444, 508, 859, 1206
AspS9I GGNCC 5 cut(s) 55, 242, 499, 500, 1063
AsuHPI GGTGA 3 cut(s) 355, 625, 916
AvaI CYCGRG 2 cut(s) 392, 1418
AvaII GGWCC 2 cut(s) 55, 242
AvrII CCTAGG 1 cut(s) 1004
BaeGI GKGCMC 4 cut(s) 382, 503, 759, 985
BamHI GGATCC 1 cut(s) 1227
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 3 cut(s) 503, 960, 1013
BbsI GAAGAC 2 cut(s) 187, 1398
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 4 cut(s) 451, 583, 1267, 1435
BccI CCATC 3 cut(s) 110, 1052, 1217
BceAI ACGGC 2 cut(s) 5, 304
BciT130I CCWGG 4 cut(s) 29, 53, 170, 833
BcoDI GTCTC 6 cut(s) 136, 318, 536, 570, 1097, 1131
BcuI ACTAGT 1 cut(s) 788
BfaI CTAG 7 cut(s) 404, 608, 641, 789, 969, 1005, 1146
BfmI CTRYAG 1 cut(s) 976
BfoI RGCGCY 1 cut(s) 860
BfrI CTTAAG 2 cut(s) 149, 1214
BfuAI ACCTGC 2 cut(s) 892, 1149
BglII AGATCT 1 cut(s) 1172
BisI GCNGC 6 cut(s) 79, 440, 572, 1281, 1284, 1424
BlnI CCTAGG 1 cut(s) 1004
BlsI GCNGC 6 cut(s) 80, 441, 573, 1282, 1285, 1425
Bme1390I CCNGG 4 cut(s) 29, 53, 170, 833
Bme18I GGWCC 2 cut(s) 55, 242
BmeT110I CYCGRG 2 cut(s) 392, 1418
BmgT120I GGNCC 5 cut(s) 55, 242, 499, 500, 1063
BmiI GGNNCC 8 cut(s) 57, 243, 501, 782, 858, 942, 1010, 1229
BmrFI CCNGG 4 cut(s) 29, 53, 170, 833
BmsI GCATC 2 cut(s) 526, 1219
BpiI GAAGAC 2 cut(s) 187, 1398
BpmI CTGGAG 1 cut(s) 1352
Bpu10I CCTNAGC 2 cut(s) 119, 924
BpuEI CTTGAG 1 cut(s) 881
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 2 cut(s) 529, 857
BsaI GGTCTC 5 cut(s) 136, 318, 570, 1097, 1131
BsaJI CCNNGG 3 cut(s) 245, 391, 1004
BsaWI WCCGGW 1 cut(s) 1018
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 296, 326
Bsc4I CCNNNNNNNGG 8 cut(s) 34, 205, 238, 433, 866, 1018, 1046, 1387
Bse118I RCCGGY 2 cut(s) 623, 1039
Bse1I ACTGG 2 cut(s) 718, 1065
Bse3DI GCAATG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 4 cut(s) 29, 53, 170, 833
BseDI CCNNGG 3 cut(s) 245, 391, 1004
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 8 cut(s) 34, 205, 238, 433, 866, 1018, 1046, 1387
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 6 cut(s) 133, 479, 581, 762, 1012, 1183
BseNI ACTGG 2 cut(s) 718, 1065
BseRI GAGGAG 4 cut(s) 230, 380, 950, 1260
BseSI GKGCMC 4 cut(s) 382, 503, 759, 985
BseXI GCAGC 4 cut(s) 451, 583, 1267, 1435
BseYI CCCAGC 2 cut(s) 698, 733
BsgI GTGCAG 2 cut(s) 458, 1072
BshFI GGCC 7 cut(s) 20, 78, 426, 501, 623, 1043, 1064
BshNI GGYRCC 1 cut(s) 856
BsiHKAI GWGCWC 1 cut(s) 985
BsiHKCI CYCGRG 2 cut(s) 392, 1418
BsiSI CCGG 4 cut(s) 525, 624, 1019, 1040
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 8 cut(s) 34, 205, 238, 433, 866, 1018, 1046, 1387
BsmAI GTCTC 6 cut(s) 136, 318, 536, 570, 1097, 1131
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 7 cut(s) 20, 78, 426, 501, 623, 1043, 1064
Bso31I GGTCTC 5 cut(s) 136, 318, 570, 1097, 1131
BsoBI CYCGRG 2 cut(s) 392, 1418
Bsp120I GGGCCC 1 cut(s) 499
Bsp1286I GDGCHC 6 cut(s) 382, 503, 759, 960, 985, 1013
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 6 cut(s) 79, 92, 278, 367, 1155, 1284
BspANI GGCC 7 cut(s) 20, 78, 426, 501, 623, 1043, 1064
BspCNI CTCAG 6 cut(s) 132, 480, 580, 763, 1011, 1182
BspHI TCATGA 1 cut(s) 1341
BspLI GGNNCC 8 cut(s) 57, 243, 501, 782, 858, 942, 1010, 1229
BspMI ACCTGC 2 cut(s) 892, 1149
BspPI GGATC 9 cut(s) 103, 160, 167, 466, 592, 823, 1222, 1234, 1235
BspT107I GGYRCC 1 cut(s) 856
BspTI CTTAAG 2 cut(s) 149, 1214
BspTNI GGTCTC 5 cut(s) 136, 318, 570, 1097, 1131
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 2 cut(s) 623, 1039
BsrI ACTGG 2 cut(s) 718, 1065
BssAI RCCGGY 2 cut(s) 623, 1039
BssECI CCNNGG 3 cut(s) 245, 391, 1004
BssNI GRCGYC 2 cut(s) 529, 857
BssT1I CCWWGG 2 cut(s) 245, 1004
Bst2UI CCWGG 4 cut(s) 29, 53, 170, 833
Bst4CI ACNGT 3 cut(s) 227, 260, 980
Bst6I CTCTTC 2 cut(s) 321, 1292
BstACI GRCGYC 2 cut(s) 529, 857
BstAFI CTTAAG 2 cut(s) 149, 1214
BstAPI GCANNNNNTGC 1 cut(s) 514
BstC8I GCNNGC 6 cut(s) 276, 378, 424, 621, 625, 1208
BstDEI CTNAG 9 cut(s) 119, 466, 488, 567, 771, 924, 998, 1169, 1397
BstDSI CCRYGG 1 cut(s) 245
BstENI CCTNNNNNAGG 2 cut(s) 431, 1385
BstH2I RGCGCY 1 cut(s) 860
BstHHI GCGC 4 cut(s) 444, 508, 859, 1206
BstMAI GTCTC 6 cut(s) 136, 318, 536, 570, 1097, 1131
BstMWI GCNNNNNNNGC 6 cut(s) 17, 373, 514, 1070, 1292, 1322
BstNI CCWGG 4 cut(s) 29, 53, 170, 833
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 4 cut(s) 27, 51, 168, 831
BstSFI CTRYAG 1 cut(s) 976
BstSLI GKGCMC 4 cut(s) 382, 503, 759, 985
BstV1I GCAGC 4 cut(s) 451, 583, 1267, 1435
BstV2I GAAGAC 2 cut(s) 187, 1398
BstX2I RGATCY 3 cut(s) 159, 1172, 1227
BstYI RGATCY 3 cut(s) 159, 1172, 1227
BsuRI GGCC 7 cut(s) 20, 78, 426, 501, 623, 1043, 1064
BtgI CCRYGG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 985
BveI ACCTGC 2 cut(s) 892, 1149
Cac8I GCNNGC 6 cut(s) 276, 378, 424, 621, 625, 1208
CaiI CAGNNNCTG 2 cut(s) 1097, 1165
CciI TCATGA 1 cut(s) 1341
CfoI GCGC 4 cut(s) 444, 508, 859, 1206
Cfr10I RCCGGY 2 cut(s) 623, 1039
Cfr13I GGNCC 5 cut(s) 55, 242, 499, 500, 1063
Csp6I GTAC 2 cut(s) 512, 1378
CviAII CATG 8 cut(s) 246, 364, 509, 560, 575, 878, 1342, 1354
CviQI GTAC 2 cut(s) 512, 1378
DdeI CTNAG 9 cut(s) 119, 466, 488, 567, 771, 924, 998, 1169, 1397
DinI GGCGCC 1 cut(s) 858
DraIII CACNNNGTG 1 cut(s) 481
EaeI YGGCCR 2 cut(s) 76, 1041
Eam1104I CTCTTC 2 cut(s) 321, 1292
EarI CTCTTC 2 cut(s) 321, 1292
EciI GGCGGA 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 245, 1004
Eco24I GRGCYC 3 cut(s) 503, 960, 1013
Eco31I GGTCTC 5 cut(s) 136, 318, 570, 1097, 1131
Eco47I GGWCC 2 cut(s) 55, 242
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 2 cut(s) 392, 1418
EcoNI CCTNNNNNAGG 2 cut(s) 431, 1385
EcoO109I RGGNCCY 2 cut(s) 55, 500
EcoRI GAATTC 1 cut(s) 546
EcoRII CCWGG 4 cut(s) 27, 51, 168, 831
EcoT14I CCWWGG 2 cut(s) 245, 1004
EcoT38I GRGCYC 3 cut(s) 503, 960, 1013
EgeI GGCGCC 1 cut(s) 858
EheI GGCGCC 1 cut(s) 858
ErhI CCWWGG 2 cut(s) 245, 1004
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 8 cut(s) 249, 367, 512, 563, 578, 881, 1345, 1357
FaqI GGGAC 1 cut(s) 255
FatI CATG 8 cut(s) 245, 363, 508, 559, 574, 877, 1341, 1353
FauI CCCGC 1 cut(s) 1162
Fnu4HI GCNGC 6 cut(s) 79, 440, 572, 1281, 1284, 1424
FriOI GRGCYC 3 cut(s) 503, 960, 1013
Fsp4HI GCNGC 6 cut(s) 79, 440, 572, 1281, 1284, 1424
FspBI CTAG 7 cut(s) 404, 608, 641, 789, 969, 1005, 1146
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 4 cut(s) 443, 507, 858, 1205
GluI GCNGC 6 cut(s) 79, 440, 572, 1281, 1284, 1424
GsaI CCCAGC 2 cut(s) 702, 737
GsuI CTGGAG 1 cut(s) 1352
HaeII RGCGCY 1 cut(s) 860
HaeIII GGCC 7 cut(s) 20, 78, 426, 501, 623, 1043, 1064
HapII CCGG 4 cut(s) 525, 624, 1019, 1040
HhaI GCGC 4 cut(s) 444, 508, 859, 1206
Hin1I GRCGYC 2 cut(s) 529, 857
Hin1II CATG 8 cut(s) 249, 367, 512, 563, 578, 881, 1345, 1357
Hin6I GCGC 4 cut(s) 442, 506, 857, 1204
HinP1I GCGC 4 cut(s) 442, 506, 857, 1204
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HinfI GANTC 2 cut(s) 448, 767
HpaII CCGG 4 cut(s) 525, 624, 1019, 1040
HphI GGTGA 3 cut(s) 355, 625, 916
Hpy166II GTNNAC 2 cut(s) 693, 983
Hpy188I TCNGA 5 cut(s) 327, 772, 888, 1049, 1172
Hpy8I GTNNAC 2 cut(s) 693, 983
HpyAV CCTTC 4 cut(s) 70, 173, 322, 340
HpyCH4III ACNGT 3 cut(s) 227, 260, 980
HpyCH4IV ACGT 2 cut(s) 529, 1260
HpyCH4V TGCA 6 cut(s) 439, 794, 805, 983, 1089, 1123
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 373, 514, 1070, 1292, 1322
HpyF3I CTNAG 9 cut(s) 119, 466, 488, 567, 771, 924, 998, 1169, 1397
HpySE526I ACGT 2 cut(s) 529, 1260
Hsp92I GRCGYC 2 cut(s) 529, 857
Hsp92II CATG 8 cut(s) 249, 367, 512, 563, 578, 881, 1345, 1357
HspAI GCGC 4 cut(s) 442, 506, 857, 1204
KasI GGCGCC 1 cut(s) 856
KroI GCCGGC 1 cut(s) 623
KroNI GCCGGC 1 cut(s) 625
LmnI GCTCC 3 cut(s) 8, 604, 1008
Lsp1109I GCAGC 4 cut(s) 451, 583, 1267, 1435
LweI GCATC 2 cut(s) 526, 1219
MaeI CTAG 7 cut(s) 404, 608, 641, 789, 969, 1005, 1146
MaeII ACGT 2 cut(s) 529, 1260
MaeIII GTNAC 3 cut(s) 31, 65, 1442
MboII GAAGA 6 cut(s) 187, 232, 308, 853, 1309, 1403
MflI RGATCY 3 cut(s) 159, 1172, 1227
MhlI GDGCHC 6 cut(s) 382, 503, 759, 960, 985, 1013
MluCI AATT 7 cut(s) 200, 493, 546, 677, 819, 1051, 1335
Mly113I GGCGCC 1 cut(s) 857
MmeI TCCRAC 2 cut(s) 282, 912
MroNI GCCGGC 1 cut(s) 623
MseI TTAA 4 cut(s) 150, 234, 1215, 1383
MslI CAYNNNNRTG 1 cut(s) 1356
MspCI CTTAAG 2 cut(s) 149, 1214
MspI CCGG 4 cut(s) 525, 624, 1019, 1040
MspR9I CCNGG 4 cut(s) 29, 53, 170, 833
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 4 cut(s) 29, 53, 170, 833
MwoI GCNNNNNNNGC 6 cut(s) 17, 373, 514, 1070, 1292, 1322
NaeI GCCGGC 1 cut(s) 625
NarI GGCGCC 1 cut(s) 857
NcoI CCATGG 1 cut(s) 245
NgoMIV GCCGGC 1 cut(s) 623
NlaIII CATG 8 cut(s) 249, 367, 512, 563, 578, 881, 1345, 1357
NlaIV GGNNCC 8 cut(s) 57, 243, 501, 782, 858, 942, 1010, 1229
NmeAIII GCCGAG 3 cut(s) 1126, 1160, 1204
NsbI TGCGCA 1 cut(s) 507
NspI RCATGY 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 1418
PagI TCATGA 1 cut(s) 1341
PaqCI CACCTGC 1 cut(s) 892
PctI GAATGC 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 448, 767
PfoI TCCNGGA 3 cut(s) 51, 168, 831
PkrI GCNGC 6 cut(s) 80, 441, 573, 1282, 1285, 1425
PluTI GGCGCC 1 cut(s) 860
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 4 cut(s) 27, 51, 168, 831
PspFI CCCAGC 2 cut(s) 698, 733
PspGI CCWGG 4 cut(s) 27, 51, 168, 831
PspN4I GGNNCC 8 cut(s) 57, 243, 501, 782, 858, 942, 1010, 1229
PspOMI GGGCCC 1 cut(s) 499
PspPI GGNCC 5 cut(s) 55, 242, 499, 500, 1063
PspPPI RGGWCCY 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 1418
PstNI CAGNNNCTG 2 cut(s) 1097, 1165
PsuI RGATCY 3 cut(s) 159, 1172, 1227
RsaI GTAC 2 cut(s) 513, 1379
RsaNI GTAC 2 cut(s) 512, 1378
RseI CAYNNNNRTG 1 cut(s) 1356
SaqAI TTAA 4 cut(s) 150, 234, 1215, 1383
SatI GCNGC 6 cut(s) 79, 440, 572, 1281, 1284, 1424
Sau96I GGNCC 5 cut(s) 55, 242, 499, 500, 1063
ScrFI CCNGG 4 cut(s) 29, 53, 170, 833
SduI GDGCHC 6 cut(s) 382, 503, 759, 960, 985, 1013
SfaNI GCATC 2 cut(s) 526, 1219
SfcI CTRYAG 1 cut(s) 976
SfoI GGCGCC 1 cut(s) 858
Sfr274I CTCGAG 1 cut(s) 1418
SinI GGWCC 2 cut(s) 55, 242
SlaI CTCGAG 1 cut(s) 1418
SmiMI CAYNNNNRTG 1 cut(s) 1356
SmlI CTYRAG 4 cut(s) 149, 896, 1214, 1418
SmoI CTYRAG 4 cut(s) 149, 896, 1214, 1418
SpeI ACTAGT 1 cut(s) 788
Sse9I AATT 7 cut(s) 200, 493, 546, 677, 819, 1051, 1335
SsiI CCGC 6 cut(s) 79, 92, 278, 367, 1155, 1284
SspDI GGCGCC 1 cut(s) 856
SspMI CTAG 7 cut(s) 404, 608, 641, 789, 969, 1005, 1146
StyD4I CCNGG 4 cut(s) 27, 51, 168, 831
StyI CCWWGG 2 cut(s) 245, 1004
TaaI ACNGT 3 cut(s) 227, 260, 980
TaiI ACGT 2 cut(s) 532, 1263
TaqI TCGA 2 cut(s) 534, 1419
TasI AATT 7 cut(s) 200, 493, 546, 677, 819, 1051, 1335
TatI WGTACW 1 cut(s) 511
TauI GCSGC 2 cut(s) 81, 1286
TfiI GAWTC 2 cut(s) 448, 767
Tru1I TTAA 4 cut(s) 150, 234, 1215, 1383
Tru9I TTAA 4 cut(s) 150, 234, 1215, 1383
TscAI CASTG 1 cut(s) 985
TseI GCWGC 4 cut(s) 439, 571, 1280, 1423
TspDTI ATGAA 4 cut(s) 308, 1335, 1370, 1377
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 985
Vha464I CTTAAG 2 cut(s) 149, 1214
VneI GTGCAC 1 cut(s) 981
VpaK11BI GGWCC 2 cut(s) 55, 242
XagI CCTNNNNNAGG 2 cut(s) 431, 1385
XapI RAATTY 4 cut(s) 493, 546, 677, 1051
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 1 cut(s) 512
XhoI CTCGAG 1 cut(s) 1418
XmaJI CCTAGG 1 cut(s) 1004
XspI CTAG 7 cut(s) 404, 608, 641, 789, 969, 1005, 1146
ZraI GACGTC 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.