Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 476 |
| Acc16I | TGCGCA | 2 cut(s) | 92, 104 |
| AccIII | TCCGGA | 1 cut(s) | 574 |
| AclWI | GGATC | 2 cut(s) | 236, 547 |
| AcoI | YGGCCR | 1 cut(s) | 12 |
| AcyI | GRCGYC | 3 cut(s) | 428, 473, 485 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 418, 450 |
| AluBI | AGCT | 2 cut(s) | 116, 283 |
| AluI | AGCT | 2 cut(s) | 116, 283 |
| Alw21I | GWGCWC | 1 cut(s) | 285 |
| AlwI | GGATC | 2 cut(s) | 236, 547 |
| Ama87I | CYCGRG | 1 cut(s) | 564 |
| Aor13HI | TCCGGA | 1 cut(s) | 574 |
| AoxI | GGCC | 1 cut(s) | 12 |
| ApeKI | GCWGC | 5 cut(s) | 52, 314, 452, 548, 551 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 418, 450 |
| AspLEI | GCGC | 2 cut(s) | 93, 105 |
| AspS9I | GGNCC | 2 cut(s) | 144, 199 |
| AsuHPI | GGTGA | 1 cut(s) | 91 |
| AvaI | CYCGRG | 1 cut(s) | 564 |
| AvaII | GGWCC | 2 cut(s) | 144, 199 |
| BanII | GRGCYC | 2 cut(s) | 285, 309 |
| Bbv12I | GWGCWC | 1 cut(s) | 285 |
| BbvI | GCAGC | 5 cut(s) | 39, 301, 439, 535, 538 |
| BccI | CCATC | 2 cut(s) | 17, 361 |
| BceAI | ACGGC | 1 cut(s) | 415 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 200, 234 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BisI | GCNGC | 8 cut(s) | 53, 315, 380, 453, 483, 546, 549, 552 |
| BlsI | GCNGC | 8 cut(s) | 54, 316, 381, 454, 484, 547, 550, 553 |
| Bme18I | GGWCC | 2 cut(s) | 144, 199 |
| BmeT110I | CYCGRG | 1 cut(s) | 564 |
| BmgT120I | GGNCC | 2 cut(s) | 144, 199 |
| BmiI | GGNNCC | 2 cut(s) | 145, 200 |
| BmsI | GCATC | 2 cut(s) | 64, 162 |
| BpmI | CTGGAG | 1 cut(s) | 269 |
| BpuEI | CTTGAG | 2 cut(s) | 23, 83 |
| BsaHI | GRCGYC | 3 cut(s) | 428, 473, 485 |
| BsaJI | CCNNGG | 1 cut(s) | 301 |
| BsaWI | WCCGGW | 1 cut(s) | 574 |
| Bse1I | ACTGG | 1 cut(s) | 286 |
| Bse3DI | GCAATG | 2 cut(s) | 93, 112 |
| BseAI | TCCGGA | 1 cut(s) | 574 |
| BseDI | CCNNGG | 1 cut(s) | 301 |
| BseMI | GCAATG | 2 cut(s) | 93, 112 |
| BseNI | ACTGG | 1 cut(s) | 286 |
| BseXI | GCAGC | 5 cut(s) | 39, 301, 439, 535, 538 |
| BsgI | GTGCAG | 1 cut(s) | 423 |
| BshFI | GGCC | 1 cut(s) | 14 |
| BsiHKAI | GWGCWC | 1 cut(s) | 285 |
| BsiHKCI | CYCGRG | 1 cut(s) | 564 |
| BsiSI | CCGG | 1 cut(s) | 575 |
| BslFI | GGGAC | 3 cut(s) | 157, 460, 484 |
| BsmFI | GGGAC | 3 cut(s) | 157, 460, 484 |
| BsnI | GGCC | 1 cut(s) | 14 |
| BsoBI | CYCGRG | 1 cut(s) | 564 |
| Bsp1286I | GDGCHC | 2 cut(s) | 285, 309 |
| Bsp13I | TCCGGA | 1 cut(s) | 574 |
| Bsp143I | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| Bsp19I | CCATGG | 1 cut(s) | 301 |
| BspANI | GGCC | 1 cut(s) | 14 |
| BspEI | TCCGGA | 1 cut(s) | 574 |
| BspLI | GGNNCC | 2 cut(s) | 145, 200 |
| BspPI | GGATC | 2 cut(s) | 236, 547 |
| BsrDI | GCAATG | 2 cut(s) | 93, 112 |
| BsrI | ACTGG | 1 cut(s) | 286 |
| BssECI | CCNNGG | 1 cut(s) | 301 |
| BssMI | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| BssNI | GRCGYC | 3 cut(s) | 428, 473, 485 |
| BssT1I | CCWWGG | 1 cut(s) | 301 |
| Bst4CI | ACNGT | 1 cut(s) | 398 |
| BstACI | GRCGYC | 3 cut(s) | 428, 473, 485 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 532 |
| BstDSI | CCRYGG | 1 cut(s) | 301 |
| BstHHI | GCGC | 2 cut(s) | 93, 105 |
| BstKTI | GATC | 6 cut(s) | 129, 163, 231, 409, 466, 542 |
| BstMBI | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 436, 521, 551, 557 |
| BstV1I | GCAGC | 5 cut(s) | 39, 301, 439, 535, 538 |
| BstX2I | RGATCY | 1 cut(s) | 228 |
| BstYI | RGATCY | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 14 |
| BtgI | CCRYGG | 1 cut(s) | 301 |
| BtgZI | GCGATG | 1 cut(s) | 185 |
| BtsI | GCAGTG | 1 cut(s) | 374 |
| BtsIMutI | CAGTG | 1 cut(s) | 374 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 532 |
| CfoI | GCGC | 2 cut(s) | 93, 105 |
| Cfr13I | GGNCC | 2 cut(s) | 144, 199 |
| CseI | GACGC | 3 cut(s) | 53, 436, 474 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CviAII | CATG | 4 cut(s) | 212, 302, 335, 479 |
| CviJI | RGCY | 9 cut(s) | 14, 116, 263, 283, 307, 418, 452, 534, 548 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 116, 263, 283, 307, 418, 452, 534, 548 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DpnI | GATC | 6 cut(s) | 128, 162, 230, 408, 465, 541 |
| DpnII | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| EaeI | YGGCCR | 1 cut(s) | 12 |
| EciI | GGCGGA | 2 cut(s) | 354, 530 |
| Ecl136II | GAGCTC | 1 cut(s) | 283 |
| Eco130I | CCWWGG | 1 cut(s) | 301 |
| Eco24I | GRGCYC | 2 cut(s) | 285, 309 |
| Eco32I | GATATC | 1 cut(s) | 580 |
| Eco47I | GGWCC | 2 cut(s) | 144, 199 |
| Eco53kI | GAGCTC | 1 cut(s) | 283 |
| Eco88I | CYCGRG | 1 cut(s) | 564 |
| EcoICRI | GAGCTC | 1 cut(s) | 283 |
| EcoO109I | RGGNCCY | 1 cut(s) | 144 |
| EcoRV | GATATC | 1 cut(s) | 580 |
| EcoT14I | CCWWGG | 1 cut(s) | 301 |
| EcoT38I | GRGCYC | 2 cut(s) | 285, 309 |
| ErhI | CCWWGG | 1 cut(s) | 301 |
| FaeI | CATG | 4 cut(s) | 215, 305, 338, 482 |
| FaqI | GGGAC | 3 cut(s) | 157, 460, 484 |
| FatI | CATG | 4 cut(s) | 211, 301, 334, 478 |
| FauI | CCCGC | 1 cut(s) | 523 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 8 cut(s) | 53, 315, 380, 453, 483, 546, 549, 552 |
| FriOI | GRGCYC | 2 cut(s) | 285, 309 |
| Fsp4HI | GCNGC | 8 cut(s) | 53, 315, 380, 453, 483, 546, 549, 552 |
| FspI | TGCGCA | 2 cut(s) | 92, 104 |
| GlaI | GCGC | 2 cut(s) | 92, 104 |
| GluI | GCNGC | 8 cut(s) | 53, 315, 380, 453, 483, 546, 549, 552 |
| GsuI | CTGGAG | 1 cut(s) | 269 |
| HaeIII | GGCC | 1 cut(s) | 14 |
| HapII | CCGG | 1 cut(s) | 575 |
| HgaI | GACGC | 3 cut(s) | 53, 436, 474 |
| HhaI | GCGC | 2 cut(s) | 93, 105 |
| Hin1I | GRCGYC | 3 cut(s) | 428, 473, 485 |
| Hin1II | CATG | 4 cut(s) | 215, 305, 338, 482 |
| Hin6I | GCGC | 2 cut(s) | 91, 103 |
| HinP1I | GCGC | 2 cut(s) | 91, 103 |
| HindIII | AAGCTT | 1 cut(s) | 114 |
| HinfI | GANTC | 1 cut(s) | 185 |
| HpaII | CCGG | 1 cut(s) | 575 |
| HphI | GGTGA | 1 cut(s) | 91 |
| Hpy188I | TCNGA | 5 cut(s) | 126, 131, 195, 225, 394 |
| Hpy188III | TCNNGA | 1 cut(s) | 575 |
| Hpy99I | CGWCG | 2 cut(s) | 225, 490 |
| HpyAV | CCTTC | 3 cut(s) | 175, 484, 503 |
| HpyCH4III | ACNGT | 1 cut(s) | 398 |
| HpyCH4IV | ACGT | 1 cut(s) | 473 |
| HpyCH4V | TGCA | 6 cut(s) | 55, 175, 211, 404, 554, 560 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 436, 521, 551, 557 |
| HpySE526I | ACGT | 1 cut(s) | 473 |
| Hsp92I | GRCGYC | 3 cut(s) | 428, 473, 485 |
| Hsp92II | CATG | 4 cut(s) | 215, 305, 338, 482 |
| HspAI | GCGC | 2 cut(s) | 91, 103 |
| Kpn2I | TCCGGA | 1 cut(s) | 574 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| LmnI | GCTCC | 2 cut(s) | 52, 288 |
| LpnPI | CCDG | 7 cut(s) | 140, 217, 278, 299, 368, 452, 491 |
| Lsp1109I | GCAGC | 5 cut(s) | 39, 301, 439, 535, 538 |
| LweI | GCATC | 2 cut(s) | 64, 162 |
| MaeII | ACGT | 1 cut(s) | 473 |
| MalI | GATC | 6 cut(s) | 128, 162, 230, 408, 465, 541 |
| MboI | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| MboII | GAAGA | 1 cut(s) | 530 |
| MflI | RGATCY | 1 cut(s) | 228 |
| MhlI | GDGCHC | 2 cut(s) | 285, 309 |
| MluCI | AATT | 1 cut(s) | 570 |
| MlyI | GAGTC | 1 cut(s) | 179 |
| MmeI | TCCRAC | 3 cut(s) | 203, 342, 372 |
| MnlI | CCTC | 6 cut(s) | 58, 171, 189, 219, 335, 351 |
| MroI | TCCGGA | 1 cut(s) | 574 |
| MseI | TTAA | 1 cut(s) | 119 |
| MslI | CAYNNNNRTG | 1 cut(s) | 98 |
| MspA1I | CMGCKG | 2 cut(s) | 52, 382 |
| MspI | CCGG | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 436, 521, 551, 557 |
| NcoI | CCATGG | 1 cut(s) | 301 |
| NdeII | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| NlaIII | CATG | 4 cut(s) | 215, 305, 338, 482 |
| NlaIV | GGNNCC | 2 cut(s) | 145, 200 |
| NsbI | TGCGCA | 2 cut(s) | 92, 104 |
| PkrI | GCNGC | 8 cut(s) | 54, 316, 381, 454, 484, 547, 550, 553 |
| PleI | GAGTC | 1 cut(s) | 179 |
| PpsI | GAGTC | 1 cut(s) | 179 |
| PpuMI | RGGWCCY | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 1 cut(s) | 285 |
| Psp5II | RGGWCCY | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 2 cut(s) | 145, 200 |
| PspPI | GGNCC | 2 cut(s) | 144, 199 |
| PspPPI | RGGWCCY | 1 cut(s) | 144 |
| PsuI | RGATCY | 1 cut(s) | 228 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| RseI | CAYNNNNRTG | 1 cut(s) | 98 |
| SacI | GAGCTC | 1 cut(s) | 285 |
| SaqAI | TTAA | 1 cut(s) | 119 |
| SatI | GCNGC | 8 cut(s) | 53, 315, 380, 453, 483, 546, 549, 552 |
| Sau3AI | GATC | 6 cut(s) | 126, 160, 228, 406, 463, 539 |
| Sau96I | GGNCC | 2 cut(s) | 144, 199 |
| SchI | GAGTC | 1 cut(s) | 179 |
| SduI | GDGCHC | 2 cut(s) | 285, 309 |
| SetI | ASST | 8 cut(s) | 69, 88, 118, 149, 285, 346, 362, 476 |
| SfaNI | GCATC | 2 cut(s) | 64, 162 |
| SinI | GGWCC | 2 cut(s) | 144, 199 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 98 |
| SmlI | CTYRAG | 2 cut(s) | 38, 62 |
| SmoI | CTYRAG | 2 cut(s) | 38, 62 |
| Sse9I | AATT | 1 cut(s) | 570 |
| SstI | GAGCTC | 1 cut(s) | 285 |
| StyI | CCWWGG | 1 cut(s) | 301 |
| TaaI | ACNGT | 1 cut(s) | 398 |
| TaiI | ACGT | 1 cut(s) | 476 |
| TaqI | TCGA | 1 cut(s) | 488 |
| TasI | AATT | 1 cut(s) | 570 |
| TauI | GCSGC | 3 cut(s) | 382, 485, 548 |
| Tru1I | TTAA | 1 cut(s) | 119 |
| Tru9I | TTAA | 1 cut(s) | 119 |
| TscAI | CASTG | 1 cut(s) | 381 |
| TseI | GCWGC | 5 cut(s) | 52, 314, 452, 548, 551 |
| TspGWI | ACGGA | 1 cut(s) | 191 |
| TspRI | CASTG | 1 cut(s) | 381 |
| VpaK11BI | GGWCC | 2 cut(s) | 144, 199 |
| ZraI | GACGTC | 1 cut(s) | 474 |