FvH4_7g28010

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000051
Physical Location & Seq
Reverse (-)
20807335 .. 20810809
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28010.t4

Sequence Viewer

Length: 2754 bp
ATGAAGACGAAGCAAACCAATGCTGCTGTTTGTTCTTACTTCTTGATTCTTTCATTGAGTATTTCCTTGGTCATGGCCATTGGAGAAAACACAAGTACTATTCCGGTGAATGTGGGAGTGATTCTCGATATGGATGATTCGCCAAGTAAAGTTTGGTTGAGCTGCATCAACATGGCCCTATCAGATTTCTATGCATCTCACCGTTCTGCGAAGACGAGGCTGGTTTTGAGTACTAGGGACTCCAGAAATGATGTTGTAGGCGCAGCTGCTGCAGCTTTGGACCTCATAAAGAATGTTCAAGTTCAAGCGATTATAGGGCCTGTATCATCAATGCAAGCCAATTTCCTGATTGATCTAGGAGAGAAGGCTCACATGCCCATGATCTCATTTTCAGCAACAAGTCCTTCCCTCACCTCCCACCCAAGTTCGTATTTCTTCCGAGCTGCACAAACTGACTCCTCTCAGGTCAAAGCCATAGCTGCTATTGTCCAAGCTTTTGGGTGGAGAGAAGCTGTGCCAATCTATATAGATAATGCCTTTGGCGAGGGGGTACTACCCTACTTGGTGGATGCCTTGCAAGAGGCTCGAGCTCGCATGCCTTACCGGAGTGCCATACCTCCAACCGCAACGAATGACCAACTTATTGGAGAGCTTTACAAGTTGATGACAATGCAAATCCGAGTCTTCATTGTGCACATGACTCCCTCCCTTGGTTCTAGGCTTTTCGCCAAAGCGCAAGAGTTGGGGATGATGAAGGAAGGCTATGTTTGGATCATGACCAATGGGCTAACCAATCTGTTGAGTTCAACAAACGGTTCAGTCATCAACTCAATGCAAGGGGCATTGGGTGTGAGAACTTATGTGCCAATAACAGACGAGCTTGTTGACTTCAGGGCTCGATGGAAAAGGAAATTCCAACAAGAAAATCCGAGCATAGTTGATGTTGAACTAGATGTTTTTGGACTATGGGCATATGATGCTGCCTATGCATTAGCCATGGCAGTTGAGAATGTTGGCACTAGATCGACCTTTGGCTTCCAAAAGACGCATACTTCAATCAACTCATCATCAACAGATCTCGAAACTCTTGGTGTCTCTAGCAAAGGTCTAGAACTTTCCAAATTCTTGTCAAGTACTAGATTTAGAGGCATTGCAGGAGATTTCAGTTTTGTTAACGGTCAATTACAATCTCCAATGTTCGAAATAGTTAATGTGAATGGTAATGGAGCAAGAGGCATTGGGTTTTGGACACCAAAACGTGGACTTGTGAAAGATTTGAACACCTCAAAGGACACCAAGAGTGCATACTCAAGTTCTAAATCTGGTATGGGACCAATAATATGGCCTGGAGATTCTGCCTCAACTCCGAAAGGTTGGGAAGTTCCCACAAATGGTAAAAAGTTGAGAGTAGGAGTTCCTGTGAAGATTGGTTCTCCTGAGCTTGTGAAGGTGGTGCGTAATCCTGTCACTAATGCAACAGAAGTCACTGGGTTCTGCATTGACATCTTTAAAGCTGTTATGGAAGGATTACCCTACGCAGTTACTTATGACTTCGTTCCCTTTGCAAAGCCCGATGGTACTACTGCTGGCAGCTACAATGACTTGGTTCATCAAGTTTTTCTTGGGAATTTCGATGCTTTGGCCGCAGCGACAACGATTAGAGGGAACAGGTCTTTGTATGTTGATTTTACATTGCCATACACAGAATCGGGAGTAGTAATGGTAGTGCAAACGAAAGATAGTCGGAGCCAAGATCCATGGATTTTCCTCAAGCCTTTGGAATGGAAGCTTTGGCTGACAATTTGTTGCTCTTTCATCGCAATTGGTTTTGTGGTTTGGGTTCTTGAACATCGTATCAATGATGATTTTCGTGGTAAACCCTCGCGTCAAGTCGGCACAAGCATTTTGTTCTCCCTCTCAACAATGGTTTATGCACATCAGAATGTGGTTAGCAACTTGAGTAGGATTGTGGTGATCGTTTGGGTATTTGTTGTGCTAGTACTAGTTCAAAGTTATGGAGCTAGTCTATCATCAATACTAACGGTTCCACAGCTAAAACCAAGTTATTCTGGGATAGACGTGCTTGTGAAGAATAAGGATTATGTAGGTTACCCAAAGGGTTCGTTTGTCTACAGCCTTATGATAGAAAGAGGTTTTGATGATTCTAAAATAAAGCCTTATACAACACCGGAAGAATGTGACCAACTTTTGACAAAGGGAAGTGCAAATGGTGGTATTGCTGCTGCCATTGATGAAACTCCCAACTTGAAGCTATTTCTTGCCAAGTATTGCAAAAAATACATGGTTGGCCCAATCTTCAAAACTAGTGGCTTTGCCTTTGTTTTTCCCAAAGGTTCACCTCTTGTACCGGATGTTTCAAGGTCAATTCTAAATGTGACCGAGGGGGACGAGATGAAGAACATTGAGAGTAAATGGTTCGGAGAAACTACCTGCTTAGACAACAAACCAAATGATTCTGATCACCGCCGTTTTACATTTTACAGCTTTTGGGTTCTCTTCCTCATTTCCGGTGTCTCTTCATGTTTAGCTCTCATCATCCATACAACATTATTCTTTCATAAGAATCTACACATCTTATTGACATGTTGGTCAGTATGGCGAAGCATTCGAGTCATGTTTATTGTACTGAGTTATACTCCAAACTCATCTTTCTTGAGGGAACAAGCAGAAACAGATGTGGATCAAATGGTTACAGCTCCTCAAGGTGAAGGAGCTGATCAAGAACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

918

Amino Acids

101.06

Weight (kDa)

8.29

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 2 - 298 5.3e-69 Receptor family ligand binding region
Peripla_BP_6 PF13458 8 - 236 2e-11 Periplasmic binding protein
Lig_chan-Glu_bd PF10613 377 - 468 5.2e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 381 - 705 9.6e-11 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 485 - 735 5.9e-30 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2608
Acc36I ACCTGC 1 cut(s) 2459
AccB7I CCANNNNNTGG 1 cut(s) 1259
AccI GTMKAC 1 cut(s) 2130
AccII CGCG 1 cut(s) 1885
AciI CCGC 3 cut(s) 624, 1644, 2485
AclWI GGATC 3 cut(s) 779, 1748, 2709
AcoI YGGCCR 2 cut(s) 75, 1641
AcsI RAATTY 3 cut(s) 911, 1121, 1627
AcuI CTGAAG 1 cut(s) 874
AfaI GTAC 8 cut(s) 97, 232, 552, 1135, 1579, 2001, 2367, 2646
AfiI CCNNNNNNNGG 3 cut(s) 710, 1259, 1391
AflIII ACRYGT 1 cut(s) 2603
AhlI ACTAGT 2 cut(s) 2002, 2324
AjiI CACGTC 1 cut(s) 2080
AjnI CCWGG 1 cut(s) 1345
Alw21I GWGCWC 2 cut(s) 592, 696
Alw26I GTCTC 2 cut(s) 1099, 2539
Alw44I GTGCAC 1 cut(s) 692
AlwI GGATC 3 cut(s) 779, 1748, 2709
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 585
AoxI GGCC 6 cut(s) 75, 174, 317, 1343, 1641, 2308
ApaLI GTGCAC 1 cut(s) 692
ApoI RAATTY 3 cut(s) 911, 1121, 1627
AspLEI GCGC 2 cut(s) 263, 736
AspS9I GGNCC 5 cut(s) 175, 280, 317, 1331, 2309
AsuHPI GGTGA 7 cut(s) 118, 191, 403, 1984, 2349, 2474, 2738
AsuII TTCGAA 1 cut(s) 1200
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 2 cut(s) 280, 1331
BaeGI GKGCMC 1 cut(s) 696
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 2 cut(s) 592, 898
BbsI GAAGAC 3 cut(s) 11, 218, 676
Bbv12I GWGCWC 2 cut(s) 592, 696
BccI CCATC 2 cut(s) 894, 1568
BceAI ACGGC 1 cut(s) 2472
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 1 cut(s) 1347
BclI TGATCA 2 cut(s) 2479, 2737
BcoDI GTCTC 2 cut(s) 1099, 2539
BcuI ACTAGT 2 cut(s) 2002, 2324
BfmI CTRYAG 2 cut(s) 270, 2131
BfuAI ACCTGC 1 cut(s) 2459
BglII AGATCT 1 cut(s) 1075
BmcAI AGTACT 4 cut(s) 97, 232, 1135, 2001
Bme1390I CCNGG 1 cut(s) 1347
Bme18I GGWCC 2 cut(s) 280, 1331
BmeT110I CYCGRG 1 cut(s) 585
BmgBI CACGTC 1 cut(s) 2080
BmgT120I GGNCC 5 cut(s) 175, 280, 317, 1331, 2309
BmiI GGNNCC 3 cut(s) 1332, 1748, 2046
BmrFI CCNGG 1 cut(s) 1347
BmrI ACTGGG 1 cut(s) 1497
BmsI GCATC 5 cut(s) 174, 203, 559, 967, 1624
BmuI ACTGGG 1 cut(s) 1497
BpiI GAAGAC 3 cut(s) 11, 218, 676
BplI GAGNNNNNCTC 4 cut(s) 108, 140, 2641, 2673
BpmI CTGGAG 2 cut(s) 226, 1368
Bpu10I CCTNAGC 1 cut(s) 1437
Bpu14I TTCGAA 1 cut(s) 1200
BpuEI CTTGAG 5 cut(s) 1294, 1754, 1978, 2695, 2706
BsaBI GATNNNNATC 2 cut(s) 2478, 2700
BsaJI CCNNGG 5 cut(s) 66, 709, 996, 1757, 2400
BsaWI WCCGGW 5 cut(s) 103, 603, 2188, 2368, 2528
BsaXI ACNNNNNCTCC 2 cut(s) 1404, 1434
Bsc4I CCNNNNNNNGG 3 cut(s) 710, 1259, 1391
Bse1I ACTGG 1 cut(s) 1492
Bse3DI GCAATG 2 cut(s) 1149, 1691
Bse8I GATNNNNATC 2 cut(s) 2478, 2700
BseBI CCWGG 1 cut(s) 1347
BseDI CCNNGG 5 cut(s) 66, 709, 996, 1757, 2400
BseGI GGATG 5 cut(s) 139, 574, 753, 2377, 2556
BseJI GATNNNNATC 2 cut(s) 2478, 2700
BseLI CCNNNNNNNGG 3 cut(s) 710, 1259, 1391
BseMI GCAATG 2 cut(s) 1149, 1691
BseMII CTCAG 3 cut(s) 476, 1428, 2639
BseNI ACTGG 1 cut(s) 1492
BseRI GAGGAG 2 cut(s) 448, 2709
BseSI GKGCMC 1 cut(s) 696
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 1 cut(s) 1885
BshFI GGCC 6 cut(s) 77, 176, 319, 1345, 1643, 2310
BsiHKAI GWGCWC 2 cut(s) 592, 696
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 5 cut(s) 104, 604, 2189, 2369, 2529
BslFI GGGAC 3 cut(s) 251, 1344, 2420
BslI CCNNNNNNNGG 3 cut(s) 710, 1259, 1391
BsmAI GTCTC 2 cut(s) 1099, 2539
BsmFI GGGAC 3 cut(s) 251, 1344, 2420
BsmI GAATGC 1 cut(s) 2625
BsnI GGCC 6 cut(s) 77, 176, 319, 1345, 1643, 2310
BsoBI CYCGRG 1 cut(s) 585
Bsp119I TTCGAA 1 cut(s) 1200
Bsp1286I GDGCHC 3 cut(s) 592, 696, 898
Bsp19I CCATGG 2 cut(s) 996, 1757
BspACI CCGC 3 cut(s) 624, 1644, 2485
BspANI GGCC 6 cut(s) 77, 176, 319, 1345, 1643, 2310
BspCNI CTCAG 3 cut(s) 475, 1429, 2640
BspFNI CGCG 1 cut(s) 1885
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 3 cut(s) 1332, 1748, 2046
BspMAI CTGCAG 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 2459
BspPI GGATC 3 cut(s) 779, 1748, 2709
BspT104I TTCGAA 1 cut(s) 1200
BsrDI GCAATG 2 cut(s) 1149, 1691
BsrI ACTGG 1 cut(s) 1492
BssECI CCNNGG 5 cut(s) 66, 709, 996, 1757, 2400
BssT1I CCWWGG 4 cut(s) 66, 709, 996, 1757
Bst2UI CCWGG 1 cut(s) 1347
Bst4CI ACNGT 4 cut(s) 203, 815, 1178, 2044
Bst6I CTCTTC 2 cut(s) 2522, 2542
BstAPI GCANNNNNTGC 2 cut(s) 269, 977
BstBI TTCGAA 1 cut(s) 1200
BstC8I GCNNGC 4 cut(s) 336, 592, 596, 1588
BstDEI CTNAG 4 cut(s) 462, 1437, 2455, 2648
BstDSI CCRYGG 2 cut(s) 996, 1757
BstEII GGTNACC 1 cut(s) 2108
BstF5I GGATG 5 cut(s) 139, 574, 753, 2377, 2556
BstFNI CGCG 1 cut(s) 1885
BstHHI GCGC 2 cut(s) 263, 736
BstMAI GTCTC 2 cut(s) 1099, 2539
BstMWI GCNNNNNNNGC 6 cut(s) 269, 272, 479, 977, 986, 1643
BstNI CCWGG 1 cut(s) 1347
BstNSI RCATGY 3 cut(s) 376, 598, 2607
BstPI GGTNACC 1 cut(s) 2108
BstSCI CCNGG 1 cut(s) 1345
BstSFI CTRYAG 2 cut(s) 270, 2131
BstSLI GKGCMC 1 cut(s) 696
BstUI CGCG 1 cut(s) 1885
BstV2I GAAGAC 3 cut(s) 11, 218, 676
BstX2I RGATCY 2 cut(s) 1075, 1753
BstXI CCANNNNNNTGG 3 cut(s) 497, 644, 1341
BstYI RGATCY 2 cut(s) 1075, 1753
BsuRI GGCC 6 cut(s) 77, 176, 319, 1345, 1643, 2310
BtgI CCRYGG 2 cut(s) 996, 1757
BtgZI GCGATG 1 cut(s) 1801
BtrI CACGTC 1 cut(s) 2080
BtsCI GGATG 5 cut(s) 139, 574, 753, 2377, 2556
BtsIMutI CAGTG 1 cut(s) 1485
BveI ACCTGC 1 cut(s) 2459
Cac8I GCNNGC 4 cut(s) 336, 592, 596, 1588
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 774
CfoI GCGC 2 cut(s) 263, 736
Cfr13I GGNCC 5 cut(s) 175, 280, 317, 1331, 2309
CseI GACGC 2 cut(s) 1054, 1874
Csp6I GTAC 8 cut(s) 96, 231, 551, 1134, 1578, 2000, 2366, 2645
CspCI CAANNNNNGTGG 2 cut(s) 2308, 2343
CviQI GTAC 8 cut(s) 96, 231, 551, 1134, 1578, 2000, 2366, 2645
DdeI CTNAG 4 cut(s) 462, 1437, 2455, 2648
DraI TTTAAA 1 cut(s) 1510
DrdI GACNNNNNNGTC 1 cut(s) 2608
DseDI GACNNNNNNGTC 1 cut(s) 2608
EaeI YGGCCR 2 cut(s) 75, 1641
Eam1104I CTCTTC 2 cut(s) 2522, 2542
EarI CTCTTC 2 cut(s) 2522, 2542
Ecl136II GAGCTC 1 cut(s) 590
Eco130I CCWWGG 4 cut(s) 66, 709, 996, 1757
Eco24I GRGCYC 2 cut(s) 592, 898
Eco47I GGWCC 2 cut(s) 280, 1331
Eco53kI GAGCTC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 874
Eco88I CYCGRG 1 cut(s) 585
Eco91I GGTNACC 1 cut(s) 2108
EcoICRI GAGCTC 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 317
EcoO65I GGTNACC 1 cut(s) 2108
EcoRII CCWGG 1 cut(s) 1345
EcoT14I CCWWGG 4 cut(s) 66, 709, 996, 1757
EcoT22I ATGCAT 2 cut(s) 196, 991
EcoT38I GRGCYC 2 cut(s) 592, 898
ErhI CCWWGG 4 cut(s) 66, 709, 996, 1757
FalI AAGNNNNNCTT 2 cut(s) 1605, 1637
FaqI GGGAC 3 cut(s) 251, 1344, 2420
FauNDI CATATG 1 cut(s) 973
FbaI TGATCA 2 cut(s) 2479, 2737
FblI GTMKAC 1 cut(s) 2130
FokI GGATG 5 cut(s) 146, 581, 760, 2384, 2543
FriOI GRGCYC 2 cut(s) 592, 898
GlaI GCGC 2 cut(s) 262, 735
GsuI CTGGAG 2 cut(s) 226, 1368
HaeIII GGCC 6 cut(s) 77, 176, 319, 1345, 1643, 2310
HapII CCGG 5 cut(s) 104, 604, 2189, 2369, 2529
HgaI GACGC 2 cut(s) 1054, 1874
HhaI GCGC 2 cut(s) 263, 736
Hin6I GCGC 2 cut(s) 261, 734
HinP1I GCGC 2 cut(s) 261, 734
HincII GTYRAC 2 cut(s) 886, 1174
HindII GTYRAC 2 cut(s) 886, 1174
HindIII AAGCTT 2 cut(s) 492, 1787
HpaI GTTAAC 1 cut(s) 1174
HpaII CCGG 5 cut(s) 104, 604, 2189, 2369, 2529
HphI GGTGA 7 cut(s) 118, 191, 403, 1984, 2349, 2474, 2738
Hpy166II GTNNAC 7 cut(s) 694, 886, 1174, 1262, 1877, 2131, 2357
Hpy188I TCNGA 9 cut(s) 184, 440, 680, 930, 1368, 1746, 1941, 2441, 2479
Hpy8I GTNNAC 7 cut(s) 694, 886, 1174, 1262, 1877, 2131, 2357
HpyAV CCTTC 7 cut(s) 358, 414, 748, 752, 1441, 1517, 2723
HpyCH4III ACNGT 4 cut(s) 203, 815, 1178, 2044
HpyCH4IV ACGT 2 cut(s) 1258, 2079
HpyF10VI GCNNNNNNNGC 6 cut(s) 269, 272, 479, 977, 986, 1643
HpyF3I CTNAG 4 cut(s) 462, 1437, 2455, 2648
HpySE526I ACGT 2 cut(s) 1258, 2079
HspAI GCGC 2 cut(s) 261, 734
Ksp22I TGATCA 2 cut(s) 2479, 2737
KspAI GTTAAC 1 cut(s) 1174
LmnI GCTCC 5 cut(s) 1226, 1746, 2018, 2722, 2732
LweI GCATC 5 cut(s) 174, 203, 559, 967, 1624
MaeII ACGT 2 cut(s) 1258, 2079
MaeIII GTNAC 7 cut(s) 1465, 1483, 1540, 2108, 2198, 2395, 2710
MfeI CAATTG 2 cut(s) 1821, 2749
MflI RGATCY 2 cut(s) 1075, 1753
MhlI GDGCHC 3 cut(s) 592, 696, 898
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 9 cut(s) 340, 911, 1121, 1181, 1627, 1800, 1821, 2385, 2749
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 5 cut(s) 233, 449, 690, 694, 2640
MmeI TCCRAC 3 cut(s) 644, 940, 1724
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 2 cut(s) 196, 991
MscI TGGCCA 1 cut(s) 77
MseI TTAA 3 cut(s) 1173, 1209, 1509
MslI CAYNNNNRTG 3 cut(s) 170, 377, 1941
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 5 cut(s) 104, 604, 2189, 2369, 2529
MspR9I CCNGG 1 cut(s) 1347
MunI CAATTG 2 cut(s) 1821, 2749
Mva1269I GAATGC 1 cut(s) 2625
MvaI CCWGG 1 cut(s) 1347
MvnI CGCG 1 cut(s) 1885
MwoI GCNNNNNNNGC 6 cut(s) 269, 272, 479, 977, 986, 1643
NcoI CCATGG 2 cut(s) 996, 1757
NdeI CATATG 1 cut(s) 973
NlaIV GGNNCC 3 cut(s) 1332, 1748, 2046
NmuCI GTSAC 4 cut(s) 1465, 1483, 2198, 2395
NsiI ATGCAT 2 cut(s) 196, 991
NspI RCATGY 3 cut(s) 376, 598, 2607
NspV TTCGAA 1 cut(s) 1200
PaeI GCATGC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 585
PagI TCATGA 1 cut(s) 774
PciI ACATGT 1 cut(s) 2603
PctI GAATGC 1 cut(s) 2625
PfeI GAWTC 8 cut(s) 46, 121, 137, 1352, 1706, 2162, 2474, 2584
PflMI CCANNNNNTGG 1 cut(s) 1259
PleI GAGTC 5 cut(s) 233, 449, 689, 694, 2639
PpsI GAGTC 5 cut(s) 233, 449, 689, 694, 2639
PscI ACATGT 1 cut(s) 2603
Psp124BI GAGCTC 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 1345
PspEI GGTNACC 1 cut(s) 2108
PspGI CCWGG 1 cut(s) 1345
PspN4I GGNNCC 3 cut(s) 1332, 1748, 2046
PspPI GGNCC 5 cut(s) 175, 280, 317, 1331, 2309
PspXI VCTCGAGB 1 cut(s) 585
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 2 cut(s) 1075, 1753
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 8 cut(s) 97, 232, 552, 1135, 1579, 2001, 2367, 2646
RsaNI GTAC 8 cut(s) 96, 231, 551, 1134, 1578, 2000, 2366, 2645
RseI CAYNNNNRTG 3 cut(s) 170, 377, 1941
SacI GAGCTC 1 cut(s) 592
SaqAI TTAA 3 cut(s) 1173, 1209, 1509
Sau96I GGNCC 5 cut(s) 175, 280, 317, 1331, 2309
ScaI AGTACT 4 cut(s) 97, 232, 1135, 2001
SchI GAGTC 5 cut(s) 233, 449, 690, 694, 2640
ScrFI CCNGG 1 cut(s) 1347
SduI GDGCHC 3 cut(s) 592, 696, 898
SfaNI GCATC 5 cut(s) 174, 203, 559, 967, 1624
SfcI CTRYAG 2 cut(s) 270, 2131
Sfr274I CTCGAG 1 cut(s) 585
SfuI TTCGAA 1 cut(s) 1200
SinI GGWCC 2 cut(s) 280, 1331
SlaI CTCGAG 1 cut(s) 585
SmiMI CAYNNNNRTG 3 cut(s) 170, 377, 1941
SmlI CTYRAG 6 cut(s) 585, 1309, 1769, 1957, 2674, 2721
SmoI CTYRAG 6 cut(s) 585, 1309, 1769, 1957, 2674, 2721
SpeI ACTAGT 2 cut(s) 2002, 2324
SphI GCATGC 1 cut(s) 598
Sse9I AATT 9 cut(s) 340, 911, 1121, 1181, 1627, 1800, 1821, 2385, 2749
SsiI CCGC 3 cut(s) 624, 1644, 2485
SstI GAGCTC 1 cut(s) 592
StyD4I CCNGG 1 cut(s) 1345
StyI CCWWGG 4 cut(s) 66, 709, 996, 1757
TaaI ACNGT 4 cut(s) 203, 815, 1178, 2044
TaiI ACGT 2 cut(s) 1261, 2082
TaqI TCGA 8 cut(s) 126, 586, 898, 1025, 1080, 1200, 1632, 2629
TaqII GACCGA 1 cut(s) 2414
TasI AATT 9 cut(s) 340, 911, 1121, 1181, 1627, 1800, 1821, 2385, 2749
TatI WGTACW 5 cut(s) 95, 230, 1133, 1999, 2644
TauI GCSGC 1 cut(s) 1646
TfiI GAWTC 8 cut(s) 46, 121, 137, 1352, 1706, 2162, 2474, 2584
Tru1I TTAA 3 cut(s) 1173, 1209, 1509
Tru9I TTAA 3 cut(s) 1173, 1209, 1509
TscAI CASTG 1 cut(s) 1492
TseFI GTSAC 4 cut(s) 1465, 1483, 2198, 2395
Tsp45I GTSAC 4 cut(s) 1465, 1483, 2198, 2395
TspRI CASTG 1 cut(s) 1492
Van91I CCANNNNNTGG 1 cut(s) 1259
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 280, 1331
XapI RAATTY 3 cut(s) 911, 1121, 1627
XbaI TCTAGA 1 cut(s) 1108
XceI RCATGY 3 cut(s) 376, 598, 2607
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 585
XmiI GTMKAC 1 cut(s) 2130
ZrmI AGTACT 4 cut(s) 97, 232, 1135, 2001
Zsp2I ATGCAT 2 cut(s) 196, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.