Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000051

Physical Location & Seq

Genomic Coordinates Forward (+)

62830677 .. 62834393

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGATGAAGAAGAACCATACCAACCTTCACCTTCTTATCTCTATCTTTTTCCTCTGTACTTTCTGTTCATGGGTTTCCTTAGCCCTGGCACAATCTGAAACCATTATCCCAGTGAATGTGGGGGTTGTTCTCGATGACCTTAAGTATTCATTGACCAAGGATATTTGGTTGCATTGCATGAAAATGGCTCTCGCAGACTTCTATGCTATTCATGCTCACTACAACACTAGGCTTGTTTTGAACACTAGGCACTGCAGAGAAAGTGTTGTCAGTGCAGCTGCTGCAGCTCTAGATCTGATAAAGAATGAACGAGTGAAAGCCATCATCGGGCCAGTGACATCCATGCAGACGAGCTTTGTCATTAATCTTGGAAACCAGGCTCATGTACCTATTATATCATTTTCTGCTACAAGCCCTTCTCTTACTTCTCTCCGGATCCCCTATTTCTTTCAATTTGCACAGACTGACTCATCCCAAGTGGAAGCCATTAGTGCAATTGTTCAAGCCTTTGGATGGAGGCAAGTCGTGCCTATCTATATAGAAACTGAGTATGGGGAGGGAATCATACCATACTTAACTGACGCCTTGCATGAGGTAAATGCTCGTGTCCCATACCGAAGTGTCATTCCCTCATCAGCCACTGATGGTCAAATCGTTCAAGAACTTTCCAAGTTGATGACAATGGAAACCAGAGTCTTCATTGTCCACATGACAACTGATTTATCCTCTAGATTATTTGTCAAGGCAAAAGAGATTGGGATGATGAGTAAAGGGTATGTATGGCTCACTACTAATGAGATACTTAATAGATTACAGTCACAAAATTCTACAGTCATTGATTCCATGCAAGGTGTATTGGGTGTACAAACTTTTGTTCCACTAACACCAGAGCTTGACGAACTCAAGATACGGTTGAAACAGAAATTCCATACAGACAATCCAGTCATTGGTGCTGAATTGGATGTTCTTGGACTTTGGGCTTATGATGCTGTTTTTGCAGTGGCCATGGCAATTGAACAAGTAATTGGAACTCCAACTGGCTTTCCCTTCCAAGATTCAAATGCTGCTTCCATCAACTCGACAGATCTTGAAGGTTTTCCGGTCTCTCCATATGGGCCAAAACTTCTCAGAGCTCTGTCAACTGCTAGATTTGAAGGGATAGCTGGACACTTCACGGTTGTTGGCGGGAAACGCAACTCATCAAATTTTCAGATAGTCAGTGTGAATGGTGGTGGAGCAAGAACAATTGGATTTTGGACACTGAAAAACGGCCTTGTGAAAACATTGAATTCATCAGCAGGCTCGAGTAAAATTTCAAGTTCCAAATTTGACTTTGGACCTATTAGGTGGCCGGGGGGTTCTCTCTCTGTTCCCAAAGGATGGGAAATCCCAAAAAAAGGAAAGAAATTGAGAATTGGAGTTCCTGTCAAGGTTGATTTTACTGAGTTTGTTAAGGTAGCAAAAGACAAAACTAACACAACGAATGTCACAGGCTTCAGTGTGGATGTATTTAAGGCTGCAGTGAAACTATTACCATATGATCTTTCTTATGAGTTCATTCCCTTTGCGAACTCTGATGGCACCAGTGCCGGCACTTACAATGAGTTGTGCTATCAAGTATATCTTGGGAACTTTGATGCTGTGGTGGGAGATACAACTATTAGAGCAGACAGGTCATTATATGTGGACTTTACAATGCCATACTCAGAATCTGGTGTAGCAATGGCTGTGCCAGTCATCGACTTCAAGAGCAAACATGTATTGGCTTTCTTGAAGCCTTGGACATGGGACCTGTGGCTAACAATTTGTTTTTTCTTTGTCTATATTGGTTTTGTGGTTTGGGTTCTTGAACATCGAATTAATAAAGAATTCCGCGGCCCTCTCTTACATCAAGTTGGCACCAGTGTCTGGTTCTCATGCTCAACCATGGTGTTTGCGCATAGGGAGAGACTTGTTAGCAACTTGGCTAGATTCGTTATGATTATCTGGGTGTTTGTTGTGCTTATATTGACCATAAATTACACAGCCAGTTTATCATCATTGTATACAGTTGAACAACTCCAGCCAACAGTTACTGACATAGAGGTTCTAGTAAGGCATCAAGATAATATAGGCTACATAAAGAATTCTTTTGTTTACGATCTCCTGAAACAAGTAGGTTTTGATGATTCTAAGCTGAAGGATTTTGAAACCATAGAAGAAATTGATGAAGCTCTTTCAAAAGGGACTGTGAATGGTGGTATTGCTGCTTTTGTTCATGGAACCCCCAAGATGAAGCTTTTTCTTGCCAAATATTGTTCTAAATATACCATGATTGGACCCATCTTTAAAACTGACGGATATGCCTTTGTGTTTCCGAAACGTTCCCCACTTGTAGCCGATGTTTCACAGGCAGTCCTAAACATGACTGGAGGACAGGAGATATTGAATCTTGAAAAGAAATGGTTCGAGAAAGAATCCAGTTGTCAAGACTCGAGTGATGCAACAGTTTCTAGCAATCGTCGTGGGCTTGGTAGCTTTTGGGTCCTGTTCCTCATTGCCGGTTTGGCTTCAGTACTTGCTATGATTATATTTGTAGCTTCCTTCATTTATAGGCATAGGTTCGTGTTAGTGCAACCAGCTGATTCAGAACCCTCAATATGGAGAAAGATCCGAGCTCTGTTCAAAATTTTCAATGAAAAAGACCTCGACTCTCATACTTTCAAAAGGAGTAATCGACAAAGAGATGCAGTTATGGATTCGCCAAACAACTTCCCAGGAACTTTAGTCCACCACAATTCGGATCACACTGATCAAATAAACTCTTTGTTTATTGGAGAGCAACAAACAAGCTCAATTGTTGAAGCGCCTTCAGACGAACTACTTCCTTCAGCTACTGAGGTTGTGATCACAGTTCAAGAAATGCATAGAACTACTTCTAACACAGCTCAAGAATACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

980

Amino Acids

109.3

Weight (kDa)

7.1

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	56 - 410	2.9e-78	Receptor family ligand binding region
Peripla_BP_6	PF13458	56 - 409	3.5e-15	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	487 - 576	1.7e-06	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	492 - 817	1.6e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	595 - 850	4.9e-33	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca	FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica	MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica	Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis	pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis	RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata	RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora	Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii	Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa	Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha	Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana	Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	941
Acc16I	TGCGCA	1 cut(s)	1938
AccB1I	GGYRCC	2 cut(s)	1580, 1898
AccB7I	CCANNNNNTGG	3 cut(s)	947, 1380, 1908
AccI	GTMKAC	1 cut(s)	2045
AccII	CGCG	1 cut(s)	1875
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	3 cut(s)	1185, 1873, 1875
AclI	AACGTT	1 cut(s)	2362
AclWI	GGATC	4 cut(s)	430, 443, 2644, 2790
AcoI	YGGCCR	2 cut(s)	1002, 1349
AcsI	RAATTY	9 cut(s)	823, 923, 1204, 1288, 1311, 1325, 1868, 2125, 2667
AcuI	CTGAAG	5 cut(s)	1480, 2198, 2535, 2835, 2853
AcyI	GRCGYC	1 cut(s)	582
AfaI	GTAC	4 cut(s)	58, 387, 864, 2556
AfiI	CCNNNNNNNGG	8 cut(s)	327, 513, 947, 1380, 1397, 1908, 2640, 2779
AflII	CTTAAG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	1756
AjnI	CCWGG	3 cut(s)	84, 375, 2755
AjuI	GAANNNNNNNTTGG	2 cut(s)	1008, 1040
Alw21I	GWGCWC	2 cut(s)	1135, 2659
Alw26I	GTCTC	2 cut(s)	1108, 1942
AlwI	GGATC	4 cut(s)	430, 443, 2644, 2790
AlwNI	CAGNNNCTG	6 cut(s)	281, 641, 1712, 1908, 2075, 2876
Ama87I	CYCGRG	2 cut(s)	1303, 2473
Aor13HI	TCCGGA	1 cut(s)	432
AoxI	GGCC	6 cut(s)	329, 1002, 1115, 1270, 1349, 1876
ApeKI	GCWGC	7 cut(s)	275, 278, 281, 284, 1064, 1517, 2246
ApoI	RAATTY	9 cut(s)	823, 923, 1204, 1288, 1311, 1325, 1868, 2125, 2667
AseI	ATTAAT	2 cut(s)	363, 1860
Asp700I	GAANNNNTTC	4 cut(s)	1095, 2444, 2862, 2914
AspLEI	GCGC	2 cut(s)	1939, 2848
AspS9I	GGNCC	7 cut(s)	329, 1115, 1337, 1789, 1877, 2318, 2524
AsuC2I	CCSGG	1 cut(s)	1353
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	2 cut(s)	1303, 2473
AvaII	GGWCC	4 cut(s)	1337, 1789, 2318, 2524
BalI	TGGCCA	1 cut(s)	1004
BamHI	GGATCC	1 cut(s)	435
BanI	GGYRCC	2 cut(s)	1580, 1898
BanII	GRGCYC	2 cut(s)	1135, 2659
BauI	CACGAG	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	2 cut(s)	1135, 2659
BbvI	GCAGC	7 cut(s)	265, 268, 287, 296, 1051, 1504, 2233
BccI	CCATC	7 cut(s)	329, 507, 638, 1079, 1374, 1571, 2330
BceAI	ACGGC	1 cut(s)	1285
BciT130I	CCWGG	3 cut(s)	86, 377, 2757
BclI	TGATCA	2 cut(s)	2791, 2886
BcnI	CCSGG	1 cut(s)	1353
BcoDI	GTCTC	2 cut(s)	1108, 1942
BfaI	CTAG	8 cut(s)	228, 246, 290, 729, 1146, 1968, 2090, 2493
BfmI	CTRYAG	4 cut(s)	253, 282, 828, 1518
BfoI	RGCGCY	1 cut(s)	2849
BfrI	CTTAAG	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	2546
BglII	AGATCT	2 cut(s)	292, 1084
BisI	GCNGC	8 cut(s)	276, 279, 282, 285, 1065, 1518, 1876, 2247
BlsI	GCNGC	8 cut(s)	277, 280, 283, 286, 1066, 1519, 1877, 2248
BmcAI	AGTACT	1 cut(s)	2556
Bme1390I	CCNGG	4 cut(s)	86, 377, 1353, 2757
Bme18I	GGWCC	4 cut(s)	1337, 1789, 2318, 2524
BmeT110I	CYCGRG	2 cut(s)	1303, 2473
BmgT120I	GGNCC	7 cut(s)	329, 1115, 1337, 1789, 1877, 2318, 2524
BmiI	GGNNCC	7 cut(s)	437, 1582, 1790, 1900, 2263, 2320, 2525
BmrFI	CCNGG	4 cut(s)	86, 377, 1353, 2757
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	5 cut(s)	976, 1627, 2107, 2470, 2716
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	688
BpmI	CTGGAG	2 cut(s)	2045, 2430
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	2 cut(s)	887, 2913
BpuMI	CCSGG	1 cut(s)	1353
BsaHI	GRCGYC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	1108
BsaJI	CCNNGG	8 cut(s)	84, 156, 1005, 1352, 1778, 1873, 1926, 2755
BsaWI	WCCGGW	2 cut(s)	432, 1099
BsaXI	ACNNNNNCTCC	2 cut(s)	1410, 1440
Bsc4I	CCNNNNNNNGG	8 cut(s)	327, 513, 947, 1380, 1397, 1908, 2640, 2779
Bse118I	RCCGGY	2 cut(s)	1589, 2540
Bse3DI	GCAATG	3 cut(s)	172, 1728, 2535
BseAI	TCCGGA	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	86, 377, 2757
BseDI	CCNNGG	8 cut(s)	84, 156, 1005, 1352, 1778, 1873, 1926, 2755
BseGI	GGATG	7 cut(s)	338, 470, 518, 765, 967, 1385, 1510
BseLI	CCNNNNNNNGG	8 cut(s)	327, 513, 947, 1380, 1397, 1908, 2640, 2779
BseMI	GCAATG	3 cut(s)	172, 1728, 2535
BseMII	CTCAG	5 cut(s)	537, 1141, 1434, 1719, 2868
BseXI	GCAGC	7 cut(s)	265, 268, 287, 296, 1051, 1504, 2233
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	1875
BshFI	GGCC	6 cut(s)	331, 1004, 1117, 1272, 1351, 1878
BshNI	GGYRCC	2 cut(s)	1580, 1898
BsiHKAI	GWGCWC	2 cut(s)	1135, 2659
BsiHKCI	CYCGRG	2 cut(s)	1303, 2473
BsiSI	CCGG	5 cut(s)	433, 1100, 1352, 1590, 2541
BslFI	GGGAC	3 cut(s)	593, 1802, 2239
BslI	CCNNNNNNNGG	8 cut(s)	327, 513, 947, 1380, 1397, 1908, 2640, 2779
BsmAI	GTCTC	2 cut(s)	1108, 1942
BsmFI	GGGAC	3 cut(s)	593, 1802, 2239
BsnI	GGCC	6 cut(s)	331, 1004, 1117, 1272, 1351, 1878
Bso31I	GGTCTC	1 cut(s)	1108
BsoBI	CYCGRG	2 cut(s)	1303, 2473
Bsp1286I	GDGCHC	2 cut(s)	1135, 2659
Bsp13I	TCCGGA	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	862
Bsp143I	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
Bsp19I	CCATGG	2 cut(s)	1005, 1926
BspACI	CCGC	3 cut(s)	1185, 1873, 1875
BspANI	GGCC	6 cut(s)	331, 1004, 1117, 1272, 1351, 1878
BspCNI	CTCAG	5 cut(s)	538, 1140, 1435, 1718, 2869
BspEI	TCCGGA	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	1875
BspLI	GGNNCC	7 cut(s)	437, 1582, 1790, 1900, 2263, 2320, 2525
BspMAI	CTGCAG	3 cut(s)	257, 286, 1522
BspPI	GGATC	4 cut(s)	430, 443, 2644, 2790
BspT107I	GGYRCC	2 cut(s)	1580, 1898
BspTI	CTTAAG	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	1108
BsrDI	GCAATG	3 cut(s)	172, 1728, 2535
BsrFI	RCCGGY	2 cut(s)	1589, 2540
BsrGI	TGTACA	1 cut(s)	862
BssAI	RCCGGY	2 cut(s)	1589, 2540
BssECI	CCNNGG	8 cut(s)	84, 156, 1005, 1352, 1778, 1873, 1926, 2755
BssMI	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
BssNAI	GTATAC	1 cut(s)	2046
BssNI	GRCGYC	1 cut(s)	582
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	4 cut(s)	156, 1005, 1778, 1926
Bst1107I	GTATAC	1 cut(s)	2046
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	3 cut(s)	86, 377, 2757
Bst4CI	ACNGT	9 cut(s)	816, 832, 912, 1177, 2050, 2071, 2230, 2488, 2893
BstACI	GRCGYC	1 cut(s)	582
BstAFI	CTTAAG	1 cut(s)	140
BstAPI	GCANNNNNTGC	2 cut(s)	281, 526
BstAUI	TGTACA	1 cut(s)	862
BstC8I	GCNNGC	2 cut(s)	1300, 1591
BstDEI	CTNAG	7 cut(s)	79, 546, 1127, 1443, 1705, 2172, 2877
BstDSI	CCRYGG	3 cut(s)	1005, 1873, 1926
BstF5I	GGATG	7 cut(s)	338, 470, 518, 765, 967, 1385, 1510
BstFNI	CGCG	1 cut(s)	1875
BstH2I	RGCGCY	1 cut(s)	2849
BstHHI	GCGC	2 cut(s)	1939, 2848
BstKTI	GATC	9 cut(s)	295, 438, 1087, 1543, 2143, 2652, 2785, 2794, 2889
BstMAI	GTCTC	2 cut(s)	1108, 1942
BstMBI	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
BstMWI	GCNNNNNNNGC	9 cut(s)	212, 281, 284, 491, 526, 986, 995, 1191, 2546
BstNI	CCWGG	3 cut(s)	86, 377, 2757
BstNSI	RCATGY	1 cut(s)	1760
BstSCI	CCNGG	4 cut(s)	84, 375, 1351, 2755
BstSFI	CTRYAG	4 cut(s)	253, 282, 828, 1518
BstUI	CGCG	1 cut(s)	1875
BstV1I	GCAGC	7 cut(s)	265, 268, 287, 296, 1051, 1504, 2233
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	4 cut(s)	292, 435, 1084, 2649
BstYI	RGATCY	4 cut(s)	292, 435, 1084, 2649
BstZ17I	GTATAC	1 cut(s)	2046
BsuRI	GGCC	6 cut(s)	331, 1004, 1117, 1272, 1351, 1878
BtgI	CCRYGG	3 cut(s)	1005, 1873, 1926
BtsCI	GGATG	7 cut(s)	338, 470, 518, 765, 967, 1385, 1510
BtsI	GCAGTG	3 cut(s)	250, 1005, 1527
Cac8I	GCNNGC	2 cut(s)	1300, 1591
CaiI	CAGNNNCTG	6 cut(s)	281, 641, 1712, 1908, 2075, 2876
CfoI	GCGC	2 cut(s)	1939, 2848
Cfr10I	RCCGGY	2 cut(s)	1589, 2540
Cfr13I	GGNCC	7 cut(s)	329, 1115, 1337, 1789, 1877, 2318, 2524
Cfr42I	CCGCGG	1 cut(s)	1876
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	4 cut(s)	57, 386, 863, 2555
CspCI	CAANNNNNGTGG	2 cut(s)	2485, 2520
CviQI	GTAC	4 cut(s)	57, 386, 863, 2555
DdeI	CTNAG	7 cut(s)	79, 546, 1127, 1443, 1705, 2172, 2877
DpnI	GATC	9 cut(s)	294, 437, 1086, 1542, 2142, 2651, 2784, 2793, 2888
DpnII	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
DraI	TTTAAA	1 cut(s)	2329
DrdI	GACNNNNNNGTC	1 cut(s)	941
DseDI	GACNNNNNNGTC	1 cut(s)	941
EaeI	YGGCCR	2 cut(s)	1002, 1349
Ecl136II	GAGCTC	2 cut(s)	1133, 2657
Eco130I	CCWWGG	4 cut(s)	156, 1005, 1778, 1926
Eco24I	GRGCYC	2 cut(s)	1135, 2659
Eco31I	GGTCTC	1 cut(s)	1108
Eco47I	GGWCC	4 cut(s)	1337, 1789, 2318, 2524
Eco53kI	GAGCTC	2 cut(s)	1133, 2657
Eco57I	CTGAAG	5 cut(s)	1480, 2198, 2535, 2835, 2853
Eco88I	CYCGRG	2 cut(s)	1303, 2473
EcoICRI	GAGCTC	2 cut(s)	1133, 2657
EcoO109I	RGGNCCY	2 cut(s)	1789, 2524
EcoRI	GAATTC	3 cut(s)	1288, 1868, 2125
EcoRII	CCWGG	3 cut(s)	84, 375, 2755
EcoT14I	CCWWGG	4 cut(s)	156, 1005, 1778, 1926
EcoT22I	ATGCAT	1 cut(s)	2907
EcoT38I	GRGCYC	2 cut(s)	1135, 2659
ErhI	CCWWGG	4 cut(s)	156, 1005, 1778, 1926
FalI	AAGNNNNNCTT	2 cut(s)	1608, 1640
FaqI	GGGAC	3 cut(s)	593, 1802, 2239
FauI	CCCGC	1 cut(s)	1178
FauNDI	CATATG	2 cut(s)	1111, 1537
FbaI	TGATCA	2 cut(s)	2791, 2886
FblI	GTMKAC	1 cut(s)	2045
Fnu4HI	GCNGC	8 cut(s)	276, 279, 282, 285, 1065, 1518, 1876, 2247
FokI	GGATG	7 cut(s)	325, 457, 525, 772, 974, 1392, 1517
FriOI	GRGCYC	2 cut(s)	1135, 2659
Fsp4HI	GCNGC	8 cut(s)	276, 279, 282, 285, 1065, 1518, 1876, 2247
FspBI	CTAG	8 cut(s)	228, 246, 290, 729, 1146, 1968, 2090, 2493
FspI	TGCGCA	1 cut(s)	1938
GlaI	GCGC	2 cut(s)	1938, 2847
GluI	GCNGC	8 cut(s)	276, 279, 282, 285, 1065, 1518, 1876, 2247
GsuI	CTGGAG	2 cut(s)	2045, 2430
HaeII	RGCGCY	1 cut(s)	2849
HaeIII	GGCC	6 cut(s)	331, 1004, 1117, 1272, 1351, 1878
HapII	CCGG	5 cut(s)	433, 1100, 1352, 1590, 2541
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	2 cut(s)	1939, 2848
Hin1I	GRCGYC	1 cut(s)	582
Hin6I	GCGC	2 cut(s)	1937, 2846
HinP1I	GCGC	2 cut(s)	1937, 2846
HincII	GTYRAC	1 cut(s)	1140
HindII	GTYRAC	1 cut(s)	1140
HindIII	AAGCTT	1 cut(s)	2276
HpaII	CCGG	5 cut(s)	433, 1100, 1352, 1590, 2541
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	7 cut(s)	706, 863, 1140, 1687, 2046, 2137, 2770
Hpy8I	GTNNAC	7 cut(s)	706, 863, 1140, 1687, 2046, 2137, 2770
Hpy99I	CGWCG	1 cut(s)	2505
HpyCH4III	ACNGT	9 cut(s)	816, 832, 912, 1177, 2050, 2071, 2230, 2488, 2893
HpyCH4IV	ACGT	1 cut(s)	2362
HpyF10VI	GCNNNNNNNGC	9 cut(s)	212, 281, 284, 491, 526, 986, 995, 1191, 2546
HpyF3I	CTNAG	7 cut(s)	79, 546, 1127, 1443, 1705, 2172, 2877
HpySE526I	ACGT	1 cut(s)	2362
Hsp92I	GRCGYC	1 cut(s)	582
HspAI	GCGC	2 cut(s)	1937, 2846
Kpn2I	TCCGGA	1 cut(s)	432
KroI	GCCGGC	1 cut(s)	1589
KroNI	GCCGGC	1 cut(s)	1591
Ksp22I	TGATCA	2 cut(s)	2791, 2886
KspI	CCGCGG	1 cut(s)	1876
Kzo9I	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
LmnI	GCTCC	1 cut(s)	1235
Lsp1109I	GCAGC	7 cut(s)	265, 268, 287, 296, 1051, 1504, 2233
LweI	GCATC	5 cut(s)	976, 1627, 2107, 2470, 2716
MaeI	CTAG	8 cut(s)	228, 246, 290, 729, 1146, 1968, 2090, 2493
MaeII	ACGT	1 cut(s)	2362
MaeIII	GTNAC	4 cut(s)	334, 816, 1486, 2071
MalI	GATC	9 cut(s)	294, 437, 1086, 1542, 2142, 2651, 2784, 2793, 2888
MboI	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
MboII	GAAGA	4 cut(s)	19, 22, 688, 2210
MfeI	CAATTG	5 cut(s)	495, 1011, 1245, 2835, 2938
MflI	RGATCY	4 cut(s)	292, 435, 1084, 2649
MhlI	GDGCHC	2 cut(s)	1135, 2659
MlsI	TGGCCA	1 cut(s)	1004
MluNI	TGGCCA	1 cut(s)	1004
MlyI	GAGTC	4 cut(s)	461, 702, 2465, 2684
MmeI	TCCRAC	1 cut(s)	1058
Mox20I	TGGCCA	1 cut(s)	1004
Mph1103I	ATGCAT	1 cut(s)	2907
MroI	TCCGGA	1 cut(s)	432
MroNI	GCCGGC	1 cut(s)	1589
MroXI	GAANNNNTTC	4 cut(s)	1095, 2444, 2862, 2914
MscI	TGGCCA	1 cut(s)	1004
MseI	TTAA	8 cut(s)	141, 363, 575, 804, 1452, 1512, 1860, 2328
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	3 cut(s)	278, 1875, 2621
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	5 cut(s)	433, 1100, 1352, 1590, 2541
MspR9I	CCNGG	4 cut(s)	86, 377, 1353, 2757
MunI	CAATTG	5 cut(s)	495, 1011, 1245, 2835, 2938
MvaI	CCWGG	3 cut(s)	86, 377, 2757
MvnI	CGCG	1 cut(s)	1875
MwoI	GCNNNNNNNGC	9 cut(s)	212, 281, 284, 491, 526, 986, 995, 1191, 2546
NaeI	GCCGGC	1 cut(s)	1591
NciI	CCSGG	1 cut(s)	1353
NcoI	CCATGG	2 cut(s)	1005, 1926
NdeI	CATATG	2 cut(s)	1111, 1537
NdeII	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
NgoMIV	GCCGGC	1 cut(s)	1589
NlaIV	GGNNCC	7 cut(s)	437, 1582, 1790, 1900, 2263, 2320, 2525
NmuCI	GTSAC	3 cut(s)	334, 816, 1486
NsbI	TGCGCA	1 cut(s)	1938
NsiI	ATGCAT	1 cut(s)	2907
NspI	RCATGY	1 cut(s)	1760
PaeR7I	CTCGAG	2 cut(s)	1303, 2473
PciI	ACATGT	1 cut(s)	1756
PdiI	GCCGGC	1 cut(s)	1591
PdmI	GAANNNNTTC	4 cut(s)	1095, 2444, 2862, 2914
PflMI	CCANNNNNTGG	3 cut(s)	947, 1380, 1908
PkrI	GCNGC	8 cut(s)	277, 280, 283, 286, 1066, 1519, 1877, 2248
PleI	GAGTC	4 cut(s)	461, 701, 2465, 2684
PpsI	GAGTC	4 cut(s)	461, 701, 2465, 2684
PpuMI	RGGWCCY	2 cut(s)	1789, 2524
PscI	ACATGT	1 cut(s)	1756
PshBI	ATTAAT	2 cut(s)	363, 1860
Psp124BI	GAGCTC	2 cut(s)	1135, 2659
Psp1406I	AACGTT	1 cut(s)	2362
Psp5II	RGGWCCY	2 cut(s)	1789, 2524
Psp6I	CCWGG	3 cut(s)	84, 375, 2755
PspGI	CCWGG	3 cut(s)	84, 375, 2755
PspN4I	GGNNCC	7 cut(s)	437, 1582, 1790, 1900, 2263, 2320, 2525
PspPI	GGNCC	7 cut(s)	329, 1115, 1337, 1789, 1877, 2318, 2524
PspPPI	RGGWCCY	2 cut(s)	1789, 2524
PspXI	VCTCGAGB	2 cut(s)	1303, 2473
PsrI	GAACNNNNNNTAC	4 cut(s)	49, 81, 891, 923
PstI	CTGCAG	3 cut(s)	257, 286, 1522
PstNI	CAGNNNCTG	6 cut(s)	281, 641, 1712, 1908, 2075, 2876
PsuI	RGATCY	4 cut(s)	292, 435, 1084, 2649
PvuII	CAGCTG	2 cut(s)	278, 2621
RsaI	GTAC	4 cut(s)	58, 387, 864, 2556
RsaNI	GTAC	4 cut(s)	57, 386, 863, 2555
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	2 cut(s)	1135, 2659
SacII	CCGCGG	1 cut(s)	1876
SaqAI	TTAA	8 cut(s)	141, 363, 575, 804, 1452, 1512, 1860, 2328
SatI	GCNGC	8 cut(s)	276, 279, 282, 285, 1065, 1518, 1876, 2247
Sau3AI	GATC	9 cut(s)	292, 435, 1084, 1540, 2140, 2649, 2782, 2791, 2886
Sau96I	GGNCC	7 cut(s)	329, 1115, 1337, 1789, 1877, 2318, 2524
ScaI	AGTACT	1 cut(s)	2556
SchI	GAGTC	4 cut(s)	461, 702, 2465, 2684
ScrFI	CCNGG	4 cut(s)	86, 377, 1353, 2757
SduI	GDGCHC	2 cut(s)	1135, 2659
SfaNI	GCATC	5 cut(s)	976, 1627, 2107, 2470, 2716
SfcI	CTRYAG	4 cut(s)	253, 282, 828, 1518
Sfr274I	CTCGAG	2 cut(s)	1303, 2473
Sfr303I	CCGCGG	1 cut(s)	1876
SgrBI	CCGCGG	1 cut(s)	1876
SinI	GGWCC	4 cut(s)	1337, 1789, 2318, 2524
SlaI	CTCGAG	2 cut(s)	1303, 2473
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	5 cut(s)	140, 902, 1303, 2473, 2928
SmoI	CTYRAG	5 cut(s)	140, 902, 1303, 2473, 2928
SsiI	CCGC	3 cut(s)	1185, 1873, 1875
SspI	AATATT	1 cut(s)	2294
SspMI	CTAG	8 cut(s)	228, 246, 290, 729, 1146, 1968, 2090, 2493
SstI	GAGCTC	2 cut(s)	1135, 2659
StyD4I	CCNGG	4 cut(s)	84, 375, 1351, 2755
StyI	CCWWGG	4 cut(s)	156, 1005, 1778, 1926
TaaI	ACNGT	9 cut(s)	816, 832, 912, 1177, 2050, 2071, 2230, 2488, 2893
TaiI	ACGT	1 cut(s)	2365
TaqI	TCGA	9 cut(s)	132, 1079, 1304, 1740, 1855, 2448, 2474, 2688, 2716
TatI	WGTACW	3 cut(s)	56, 862, 2554
TauI	GCSGC	1 cut(s)	1878
Tru1I	TTAA	8 cut(s)	141, 363, 575, 804, 1452, 1512, 1860, 2328
Tru9I	TTAA	8 cut(s)	141, 363, 575, 804, 1452, 1512, 1860, 2328
TseFI	GTSAC	3 cut(s)	334, 816, 1486
TseI	GCWGC	7 cut(s)	275, 278, 281, 284, 1064, 1517, 2246
Tsp45I	GTSAC	3 cut(s)	334, 816, 1486
TspGWI	ACGGA	1 cut(s)	2352
Van91I	CCANNNNNTGG	3 cut(s)	947, 1380, 1908
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	4 cut(s)	1337, 1789, 2318, 2524
VspI	ATTAAT	2 cut(s)	363, 1860
XapI	RAATTY	9 cut(s)	823, 923, 1204, 1288, 1311, 1325, 1868, 2125, 2667
XbaI	TCTAGA	2 cut(s)	289, 728
XceI	RCATGY	1 cut(s)	1760
XhoI	CTCGAG	2 cut(s)	1303, 2473
XmiI	GTMKAC	1 cut(s)	2045
XmnI	GAANNNNTTC	4 cut(s)	1095, 2444, 2862, 2914
XspI	CTAG	8 cut(s)	228, 246, 290, 729, 1146, 1968, 2090, 2493
ZrmI	AGTACT	1 cut(s)	2556
Zsp2I	ATGCAT	1 cut(s)	2907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.