Rroxscaffold_7G00198450

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
43919860 .. 43922092
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198450.1

Sequence Viewer

Length: 1593 bp
ATGGCAGTCGAACAAGTTGGACATACAAGCATTGAATATCAAAAGGCGAGTGATTCCTTAAAGGCAACAAATCTTGATGCCCTTAAGGTATCTCAGTATGGTCAAAAACTTGTTAGAGCCCTTTCTGGTACTAGATTTGAAGGTTTAGCTGGAGATTTCAATGTCATAGAAGGGGAGCTTCAGTCATCAACTTATAAGATAATTAATGTAATTGGTGTTACGATCAAGGACATTGCATTGTGGACTCCAGAAAATAGAATTGTTTCAACAAACACAAGCAAAATCTGTACTAATTCCAAGTGCATTTTTGGAACCATTAAATGGCCAGGTGATTCTTTCTCTGTTCCTAAAGGATGGGAGATCCCAACTTATAGAAAGAAGTTGAGAATAGGAGTTCCTGTCAAGGATGGTTTCACTGAGTTTGTTAAGATCACGAAAGATCCTTACACTAATACAACTGCTGTCACAGAGTTCTGTATTGATGTTTTCCATGCTGCAGTGAAATTATTGCCGTATCATCTTGCTCATGAGTTCATTCCTTATGAAAATCCTAGTGGCTCGATGGCTGTGACTTATGATGATTTGGTCTATGAAGTATCTATTGGCGTGATTTTTTATCCAATACTATGGAGGGAGAGAGTGGTCAGCAACTCGGCTAGATTTGTGATGATTTTTTGGGTATTTGTTATGCTCATAGTGACACAAAGCTACACAGCTAATCTATCGTCCCTATTAACAGTCCAACAACTCCAGCCCACTGTAACTGAGTTAAATGATCTTTTAAGGAATGGCGATATTGTCGGATACAGCAAGAATTCTTTTGTTCGTGAGATCTTGATTGGAATGGGTTTTAATAATACCAGGCTCAAGGAAATTAATTTGGTGGAAGATGGTGATAAAGAACTCACAAAAGGTACTGCGAAGGGTGGTATTGCTGCTTTTGTTGGTCAAACCCTAGGCTTGGAGGTTTTTATTTCAAAGTACTGTTCCAAATACATCATGGTTGGACCTATCTCCAAAACTAATGGGTTTGCCTTCGTGTTCCCTAAAGGTTCATCTCTTGTAGCTGATATGTCAAGCGCAATCCTAAATGTGACCGAAGGAAAGAATATTCTAGAGATTGAGGCCAATTGGATTGAGAAAGAAAGAAATTGCCAAGACTCAAGTTCCGGCAATATCTCTGGCAACAGTCTTGGCCTTGTTAGCTTTTGGGGACTATTCCTTATTACCGGGGTTGCTTCTGTATTCGCTCTGATCATATTTTTTACTTCCTTCCTTTACAAGCATAAGCATGTCTTGATGCCCCCTGATTCAACAGCTTGTACCTGGAGAAGGATTCGTGCCATATTTGAAACTTTTGATGATAGAGATGCCAGCTATTATACTTCTCGAAGAAGTCAACAGTCGAAAAAATTCACTGGTGTTGGCCATCATGGACTGGATGCATCACAGGCTAGCAATTGGCCGGAAAGTCCGTTCAGCTATACAAACCATGGAGATCTTGATTCTGTATTTGGAGGTCAACAAACACAATCTACTGGTGGAGTATCTCCGGAACCAGTTCCAACTATTAAGCTTGCTATTACTATTTAA

Protein Analysis

530

Amino Acids

58.68

Weight (kDa)

7.11

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 2 - 71 8.9e-06 Receptor family ligand binding region
Lig_chan PF00060 211 - 413 6.6e-23 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24710 AT2G24710 AT2G24710 AT2G24720 AT2G29100 AT2G29100 AT2G29110 AT2G29110 AT2G29120 AT5G27100
fragaria_vesca FvH4_2g11260 FvH4_2g11280 FvH4_2g11310 FvH4_2g11310 FvH4_2g11331 FvH4_2g11331 FvH4_2g11340 FvH4_2g11340 FvH4_2g11340 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g11350 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31980 FvH4_2g31990 FvH4_2g37140 FvH4_2g37150 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37160 FvH4_2g37161 FvH4_2g37161 FvH4_2g37163 FvH4_2g37163 FvH4_2g37170 FvH4_2g37181 FvH4_2g37191 FvH4_3g22781 FvH4_3g22781 FvH4_3g22781 FvH4_3g22790 FvH4_3g22790 FvH4_3g22810 FvH4_5g13460 FvH4_5g34751 FvH4_7g09130 FvH4_7g27991 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010 FvH4_7g28010
malus_domestica MD08G1047600.v1.1 MD08G1047700.v1.1 MD08G1048100.v1.1 MD08G1048200.v1.1 MD08G1048300.v1.1 MD08G1048500.v1.1 MD08G1048600.v1.1 MD08G1048700.v1.1 MD08G1048900.v1.1 MD08G1049000.v1.1 MD14G1064700.v1.1 MD15G1045900.v1.1 MD15G1046000.v1.1 MD15G1046200.v1.1 MD15G1046400.v1.1 MD15G1059200.v1.1 MD15G1059500.v1.1 MD15G1059600.v1.1 MD15G1059700.v1.1
prunus_persica Prupe.1G399500_v2.0.a1 Prupe.1G399600_v2.0.a1 Prupe.1G399700_v2.0.a1 Prupe.1G399800_v2.0.a1 Prupe.1G399900_v2.0.a1 Prupe.1G400000_v2.0.a1 Prupe.1G400300_v2.0.a1 Prupe.1G400400_v2.0.a1 Prupe.1G400500_v2.0.a1 Prupe.1G400600_v2.0.a1 Prupe.1G400700_v2.0.a1 Prupe.1G412700_v2.0.a1 Prupe.1G412800_v2.0.a1
pyrus_communis pycom02g01350 pycom08g04020 pycom08g04040 pycom08g04080 pycom08g04090 pycom08g04100 pycom14g05240 pycom15g04300 pycom15g04310 pycom15g04330 pycom15g04340 pycom15g04380 pycom15g05560 pycom15g05570 pycom15g05580 pycom15g05600
rosa_chinensis RchiOBHm_Chr1g0345071 RchiOBHm_Chr1g0345081 RchiOBHm_Chr1g0345171 RchiOBHm_Chr3g0480811 RchiOBHm_Chr3g0492581 RchiOBHm_Chr5g0020871 RchiOBHm_Chr5g0039801 RchiOBHm_Chr5g0039811 RchiOBHm_Chr5g0039861 RchiOBHm_Chr5g0039911 RchiOBHm_Chr5g0039941 RchiOBHm_Chr5g0039951 RchiOBHm_Chr5g0040011 RchiOBHm_Chr6g0269601 RchiOBHm_Chr6g0269621 RchiOBHm_Chr6g0269631 RchiOBHm_Chr6g0269641 RchiOBHm_Chr6g0269671 RchiOBHm_Chr6g0269681 RchiOBHm_Chr6g0269731 RchiOBHm_Chr6g0269751 RchiOBHm_Chr6g0269761 RchiOBHm_Chr6g0269771 RchiOBHm_Chr6g0269781 RchiOBHm_Chr6g0269861 RchiOBHm_Chr6g0269871 RchiOBHm_Chr6g0269881 RchiOBHm_Chr6g0269911 RchiOBHm_Chr6g0269921 RchiOBHm_Chr6g0269941 RchiOBHm_Chr6g0269951 RchiOBHm_Chr6g0304511 RchiOBHm_Chr6g0304621 RchiOBHm_Chr6g0304641 RchiOBHm_Chr6g0304651 RchiOBHm_Chr6g0304661 RchiOBHm_Chr6g0310781 RchiOBHm_Chr6g0310801 RchiOBHm_Chr6g0310811 RchiOBHm_Chr6g0310821 RchiOBHm_Chr6g0310831 RchiOBHm_Chr7g0183621 RchiOBHm_Chr7g0183651
rosa_laevigata RLG00000005035 RLG00000005036 RLG00000010458 RLG00000010459 RLG00000010460 RLG00000010961 RLG00000010962 RLG00000010963 RLG00000010964 RLG00000010966 RLG00000010970 RLG00000013824 RLG00000013825 RLG00000013826 RLG00000013828 RLG00000013829 RLG00000013831 RLG00000013833 RLG00000013835 RLG00000013837 RLG00000013840 RLG00000013842 RLG00000013844 RLG00000022758 RLG00000023449 RLG00000026705 RLG00000028849 RLG00000028853 RLG00000028854 RLG00000032569 RLG00000033944 RLG00000033945 RLG00000033947 RLG00000033949 RLG00000033951 RLG00000034239
rosa_multiflora Rmu_co8287891.1_g000001 Rmu_co8428745.1_g000001 Rmu_co8521767.1_g000002 Rmu_sc0000103.1_g000022 Rmu_sc0000103.1_g000031 Rmu_sc0000103.1_g000041 Rmu_sc0000103.1_g000053 Rmu_sc0000247.1_g000028 Rmu_sc0000247.1_g000051 Rmu_sc0000893.1_g000003 Rmu_sc0000893.1_g000017 Rmu_sc0001143.1_g000008 Rmu_sc0001143.1_g000019 Rmu_sc0001143.1_g000023 Rmu_sc0001975.1_g000003 Rmu_sc0001975.1_g000004 Rmu_sc0001975.1_g000005 Rmu_sc0001975.1_g000012 Rmu_sc0002151.1_g000006 Rmu_sc0003610.1_g000021 Rmu_sc0003682.1_g000001 Rmu_sc0003863.1_g000004 Rmu_sc0003863.1_g000007 Rmu_sc0003863.1_g000013 Rmu_sc0004196.1_g000005 Rmu_sc0004515.1_g000013 Rmu_sc0004515.1_g000024 Rmu_sc0004688.1_g000001 Rmu_sc0004688.1_g000003 Rmu_sc0004688.1_g000004 Rmu_sc0004748.1_g000006 Rmu_sc0004838.1_g000016 Rmu_sc0004838.1_g000017 Rmu_sc0005532.1_g000006 Rmu_sc0005532.1_g000011 Rmu_sc0005950.1_g000004 Rmu_sc0006576.1_g000005 Rmu_sc0006576.1_g000021 Rmu_sc0008520.1_g000002 Rmu_sc0008520.1_g000004 Rmu_sc0009130.1_g000002 Rmu_sc0018719.1_g000001 Rmu_sc0027713.1_g000005 Rmu_sc0040804.1_g000001 Rmu_ssc0000218.1_g000059 Rmu_ssc0000218.1_g000062 Rmu_ssc0000218.1_g000068 Rmu_ssc0000395.1_g000008 Rmu_ssc0000395.1_g000009 Rmu_ssc0000395.1_g000010 Rmu_ssc0000395.1_g000011 Rmu_ssc0000395.1_g000013 Rmu_ssc0000395.1_g000014
rosa_roxburghii Rroxscaffold_1G00041270 Rroxscaffold_1G00041290 Rroxscaffold_1G00041300 Rroxscaffold_1G00041360 Rroxscaffold_1G00041380 Rroxscaffold_1G00057500 Rroxscaffold_3G00270350 Rroxscaffold_4G00283160 Rroxscaffold_4G00309210 Rroxscaffold_4G00309240 Rroxscaffold_4G00309260 Rroxscaffold_4G00309290 Rroxscaffold_4G00309360 Rroxscaffold_6G00392210 Rroxscaffold_6G00401030 Rroxscaffold_7G00158260 Rroxscaffold_7G00163620 Rroxscaffold_7G00163630 Rroxscaffold_7G00163650 Rroxscaffold_7G00163680 Rroxscaffold_7G00198270 Rroxscaffold_7G00198280 Rroxscaffold_7G00198330 Rroxscaffold_7G00198340 Rroxscaffold_7G00198360 Rroxscaffold_7G00198390 Rroxscaffold_7G00198410 Rroxscaffold_7G00198450 Rroxscaffold_7G00198460 Rroxscaffold_7G00198490 Rroxscaffold_7G00198500 Rroxscaffold_7G00198510 Rroxscaffold_7G00198530 Rroxscaffold_7G00198550 Rroxscaffold_7G00198600
rosa_rugosa Rorug01G0175900 Rorug01G0176200 Rorug03G0186700 Rorug03G0254500 Rorug05G0182700 Rorug05G0183000 Rorug05G0183000 Rorug06G0049000 Rorug06G0049500 Rorug06G0049600.1 Rorug06G0049700 Rorug06G0050000 Rorug06G0050000 Rorug06G0050100 Rorug06G0050300.1 Rorug06G0050400 Rorug06G0051100 Rorug06G0051200 Rorug06G0051300 Rorug06G0051500 Rorug06G0051600 Rorug06G0051700 Rorug06G0332600 Rorug06G0332700 Rorug06G0332700 Rorug06G0383100 Rorug06G0383200 Rorug06G0383300 Rorug06G0383400 Rorug06G0459100 Rorug06G0459200
rosa_samantha Rh1BG160400 Rh1BG160500 Rh1BG160700 Rh3DG263900 Rh3DG338400 Rh5CG164400 Rh5CG164500 Rh5CG305500 Rh5CG305900 Rh5CG306000 Rh5DG280800 Rh5DG281300 Rh6AG445300 Rh6AG497000 Rh6BG174700 Rh6BG457200 Rh6CG168900 Rh6CG169800 Rh6CG512700 Rh6CG512900 Rh6DG034100 Rh6DG160500 Rh6DG160800 Rh6DG160900 Rh6DG161100 Rh6DG161400 Rh6DG161800 Rh6DG162000 Rh6DG162100 Rh6DG162200 Rh6DG444800 Rh6DG445000 Rh6DG445100 Rh6DG445200 Rh6DG445300 Rh6DG499100 Rh6DG499200 Rh6DG499300 Rh6DG499400 Rh6DG499500 Rh6DG499700 Rh7BG059800 Rh7BG060000 Rh7BG258500 Rh7BG258700
rosa_wichuraiana Rw0G006180 Rw0G007950 Rw0G018490 Rw0G022090 Rw1G015970 Rw1G015990 Rw3G021330 Rw5G025120 Rw5G025140 Rw5G025150 Rw5G025160 Rw5G025180 Rw5G025830 Rw5G025850 Rw6G014550 Rw6G014570 Rw6G014580 Rw6G014600 Rw6G014620 Rw6G014650 Rw6G014670 Rw6G038650 Rw6G038670 Rw6G038680 Rw6G038700 Rw6G038710 Rw6G038720 Rw6G043280 Rw6G043290 Rw7G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 1552
AclWI GGATC 2 cut(s) 355, 434
AcoI YGGCCR 3 cut(s) 323, 1426, 1463
AcsI RAATTY 2 cut(s) 814, 1412
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 5 cut(s) 130, 289, 916, 983, 1324
AfiI CCNNNNNNNGG 3 cut(s) 321, 961, 1332
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 7 cut(s) 35, 140, 160, 267, 978, 1314, 1352
AjnI CCWGG 3 cut(s) 325, 860, 1325
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AloI GAACNNNNNNTCC 2 cut(s) 1460, 1492
AlwI GGATC 2 cut(s) 355, 434
Aor13HI TCCGGA 1 cut(s) 1552
AoxI GGCC 5 cut(s) 323, 1125, 1195, 1426, 1463
ApeKI GCWGC 2 cut(s) 494, 935
ApoI RAATTY 2 cut(s) 814, 1412
AseI ATTAAT 2 cut(s) 204, 876
Asp700I GAANNNNTTC 3 cut(s) 262, 1412, 1560
AspA2I CCTAGG 1 cut(s) 955
AspLEI GCGC 1 cut(s) 1082
AspS9I GGNCC 1 cut(s) 1007
AsuC2I CCSGG 1 cut(s) 1231
AsuHPI GGTGA 2 cut(s) 341, 905
AsuNHI GCTAGC 1 cut(s) 1454
AvaII GGWCC 1 cut(s) 1007
AvrII CCTAGG 1 cut(s) 955
BalI TGGCCA 2 cut(s) 325, 1428
BanII GRGCYC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 481, 922
BccI CCATC 5 cut(s) 348, 401, 556, 884, 1437
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 3 cut(s) 327, 862, 1327
BciVI GTATCC 1 cut(s) 797
BclI TGATCA 1 cut(s) 1254
BcnI CCSGG 1 cut(s) 1231
BfaI CTAG 6 cut(s) 132, 552, 657, 956, 1115, 1455
BfmI CTRYAG 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 797
BglII AGATCT 2 cut(s) 831, 1498
BisI GCNGC 2 cut(s) 495, 936
BlnI CCTAGG 1 cut(s) 955
BlsI GCNGC 2 cut(s) 496, 937
BmcAI AGTACT 1 cut(s) 983
Bme1390I CCNGG 4 cut(s) 327, 862, 1231, 1327
Bme18I GGWCC 1 cut(s) 1007
BmgT120I GGNCC 1 cut(s) 1007
BmiI GGNNCC 2 cut(s) 313, 1557
BmrFI CCNGG 4 cut(s) 327, 862, 1231, 1327
BmsI GCATC 5 cut(s) 67, 1290, 1360, 1432, 1454
BmtI GCTAGC 1 cut(s) 1458
BpmI CTGGAG 4 cut(s) 171, 231, 734, 1348
BpuEI CTTGAG 2 cut(s) 851, 1147
BpuMI CCSGG 1 cut(s) 1231
BsaJI CCNNGG 3 cut(s) 955, 1230, 1492
BsaWI WCCGGW 1 cut(s) 1552
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 384, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 961, 1332
Bse1I ACTGG 4 cut(s) 1423, 1443, 1543, 1559
Bse3DI GCAATG 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 1552
BseBI CCWGG 3 cut(s) 327, 862, 1327
BseDI CCNNGG 3 cut(s) 955, 1230, 1492
BseGI GGATG 3 cut(s) 359, 412, 1447
BseLI CCNNNNNNNGG 3 cut(s) 321, 961, 1332
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 107, 408, 756
BseNI ACTGG 4 cut(s) 1423, 1443, 1543, 1559
BseXI GCAGC 2 cut(s) 481, 922
BshFI GGCC 5 cut(s) 325, 1127, 1197, 1428, 1465
BsiSI CCGG 4 cut(s) 1170, 1230, 1466, 1553
BslFI GGGAC 2 cut(s) 712, 1227
BslI CCNNNNNNNGG 3 cut(s) 321, 961, 1332
BsmFI GGGAC 2 cut(s) 712, 1227
BsnI GGCC 5 cut(s) 325, 1127, 1197, 1428, 1465
Bsp1286I GDGCHC 1 cut(s) 121
Bsp13I TCCGGA 1 cut(s) 1552
Bsp143I GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
Bsp19I CCATGG 1 cut(s) 1492
BspANI GGCC 5 cut(s) 325, 1127, 1197, 1428, 1465
BspCNI CTCAG 3 cut(s) 106, 409, 757
BspEI TCCGGA 1 cut(s) 1552
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 313, 1557
BspMAI CTGCAG 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 1458
BspPI GGATC 2 cut(s) 355, 434
BspTI CTTAAG 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 4 cut(s) 1423, 1443, 1543, 1559
BssECI CCNNGG 3 cut(s) 955, 1230, 1492
BssMI GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
BssT1I CCWWGG 2 cut(s) 955, 1492
Bst2UI CCWGG 3 cut(s) 327, 862, 1327
Bst4CI ACNGT 5 cut(s) 739, 760, 986, 1190, 1404
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 1375, 1456, 1578
BstDEI CTNAG 3 cut(s) 93, 417, 765
BstDSI CCRYGG 1 cut(s) 1492
BstENI CCTNNNNNAGG 1 cut(s) 1330
BstF5I GGATG 3 cut(s) 359, 412, 1447
BstHHI GCGC 1 cut(s) 1082
BstKTI GATC 8 cut(s) 225, 363, 432, 442, 778, 834, 1257, 1501
BstMBI GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
BstMWI GCNNNNNNNGC 2 cut(s) 1203, 1451
BstNI CCWGG 3 cut(s) 327, 862, 1327
BstNSI RCATGY 1 cut(s) 1295
BstSCI CCNGG 4 cut(s) 325, 860, 1229, 1325
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 2 cut(s) 481, 922
BstX2I RGATCY 4 cut(s) 360, 439, 831, 1498
BstXI CCANNNNNNTGG 1 cut(s) 627
BstYI RGATCY 4 cut(s) 360, 439, 831, 1498
BsuI GTATCC 1 cut(s) 797
BsuRI GGCC 5 cut(s) 325, 1127, 1197, 1428, 1465
BtgI CCRYGG 1 cut(s) 1492
BtsCI GGATG 3 cut(s) 359, 412, 1447
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 4 cut(s) 414, 504, 756, 1416
Cac8I GCNNGC 3 cut(s) 1375, 1456, 1578
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 1082
Cfr13I GGNCC 1 cut(s) 1007
Csp6I GTAC 5 cut(s) 129, 288, 915, 982, 1323
CviAII CATG 6 cut(s) 491, 527, 1000, 1292, 1433, 1493
CviQI GTAC 5 cut(s) 129, 288, 915, 982, 1323
DdeI CTNAG 3 cut(s) 93, 417, 765
DpnI GATC 8 cut(s) 224, 362, 431, 441, 777, 833, 1256, 1500
DpnII GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
EaeI YGGCCR 3 cut(s) 323, 1426, 1463
Eco130I CCWWGG 2 cut(s) 955, 1492
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 1330
EcoRI GAATTC 1 cut(s) 814
EcoRII CCWGG 3 cut(s) 325, 860, 1325
EcoT14I CCWWGG 2 cut(s) 955, 1492
EcoT22I ATGCAT 1 cut(s) 1447
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 955, 1492
FaeI CATG 6 cut(s) 494, 530, 1003, 1295, 1436, 1496
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 1280, 1312
FaqI GGGAC 2 cut(s) 712, 1227
FatI CATG 6 cut(s) 490, 526, 999, 1291, 1432, 1492
FbaI TGATCA 1 cut(s) 1254
Fnu4HI GCNGC 2 cut(s) 495, 936
FokI GGATG 3 cut(s) 366, 419, 1454
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 495, 936
FspBI CTAG 6 cut(s) 132, 552, 657, 956, 1115, 1455
GlaI GCGC 1 cut(s) 1081
GluI GCNGC 2 cut(s) 495, 936
GsuI CTGGAG 4 cut(s) 171, 231, 734, 1348
HaeIII GGCC 5 cut(s) 325, 1127, 1197, 1428, 1465
HapII CCGG 4 cut(s) 1170, 1230, 1466, 1553
HhaI GCGC 1 cut(s) 1082
Hin1II CATG 6 cut(s) 494, 530, 1003, 1295, 1436, 1496
Hin6I GCGC 1 cut(s) 1080
HinP1I GCGC 1 cut(s) 1080
HincII GTYRAC 2 cut(s) 1400, 1523
HindII GTYRAC 2 cut(s) 1400, 1523
HindIII AAGCTT 1 cut(s) 1574
HinfI GANTC 7 cut(s) 53, 244, 332, 1160, 1310, 1336, 1505
HpaII CCGG 4 cut(s) 1170, 1230, 1466, 1553
HphI GGTGA 2 cut(s) 341, 905
Hpy166II GTNNAC 3 cut(s) 243, 1400, 1523
Hpy188I TCNGA 2 cut(s) 803, 1254
Hpy8I GTNNAC 3 cut(s) 243, 1400, 1523
HpyAV CCTTC 7 cut(s) 134, 164, 916, 1045, 1094, 1282, 1326
HpyCH4III ACNGT 5 cut(s) 739, 760, 986, 1190, 1404
HpyCH4V TGCA 4 cut(s) 236, 303, 497, 1445
HpyF10VI GCNNNNNNNGC 2 cut(s) 1203, 1451
HpyF3I CTNAG 3 cut(s) 93, 417, 765
Hsp92II CATG 6 cut(s) 494, 530, 1003, 1295, 1436, 1496
HspAI GCGC 1 cut(s) 1080
Kpn2I TCCGGA 1 cut(s) 1552
Ksp22I TGATCA 1 cut(s) 1254
Kzo9I GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 2 cut(s) 481, 922
LweI GCATC 5 cut(s) 67, 1290, 1360, 1432, 1454
MaeI CTAG 6 cut(s) 132, 552, 657, 956, 1115, 1455
MaeIII GTNAC 6 cut(s) 217, 463, 568, 697, 760, 1093
MalI GATC 8 cut(s) 224, 362, 431, 441, 777, 833, 1256, 1500
MboI GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
MboII GAAGA 2 cut(s) 899, 1404
MfeI CAATTG 2 cut(s) 1129, 1459
MflI RGATCY 4 cut(s) 360, 439, 831, 1498
MhlI GDGCHC 1 cut(s) 121
MlsI TGGCCA 2 cut(s) 325, 1428
MluNI TGGCCA 2 cut(s) 325, 1428
MlyI GAGTC 2 cut(s) 238, 1154
MmeI TCCRAC 4 cut(s) 766, 781, 985, 1589
MnlI CCTC 4 cut(s) 624, 958, 1117, 1511
Mox20I TGGCCA 2 cut(s) 325, 1428
Mph1103I ATGCAT 1 cut(s) 1447
MroI TCCGGA 1 cut(s) 1552
MroXI GAANNNNTTC 3 cut(s) 262, 1412, 1560
MscI TGGCCA 2 cut(s) 325, 1428
MslI CAYNNNNRTG 1 cut(s) 1290
Msp20I TGGCCA 2 cut(s) 325, 1428
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 4 cut(s) 1170, 1230, 1466, 1553
MspR9I CCNGG 4 cut(s) 327, 862, 1231, 1327
MunI CAATTG 2 cut(s) 1129, 1459
MvaI CCWGG 3 cut(s) 327, 862, 1327
MwoI GCNNNNNNNGC 2 cut(s) 1203, 1451
NciI CCSGG 1 cut(s) 1231
NcoI CCATGG 1 cut(s) 1492
NdeII GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
NheI GCTAGC 1 cut(s) 1454
NlaIII CATG 6 cut(s) 494, 530, 1003, 1295, 1436, 1496
NlaIV GGNNCC 2 cut(s) 313, 1557
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 4 cut(s) 463, 568, 697, 1093
NsiI ATGCAT 1 cut(s) 1447
NspI RCATGY 1 cut(s) 1295
PagI TCATGA 1 cut(s) 526
PdmI GAANNNNTTC 3 cut(s) 262, 1412, 1560
PfeI GAWTC 5 cut(s) 53, 332, 1310, 1336, 1505
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 2 cut(s) 496, 937
PleI GAGTC 2 cut(s) 238, 1154
PpsI GAGTC 2 cut(s) 238, 1154
PshBI ATTAAT 2 cut(s) 204, 876
PsiI TTATAA 1 cut(s) 195
Psp6I CCWGG 3 cut(s) 325, 860, 1325
PspGI CCWGG 3 cut(s) 325, 860, 1325
PspN4I GGNNCC 2 cut(s) 313, 1557
PspPI GGNCC 1 cut(s) 1007
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 4 cut(s) 360, 439, 831, 1498
RsaI GTAC 5 cut(s) 130, 289, 916, 983, 1324
RsaNI GTAC 5 cut(s) 129, 288, 915, 982, 1323
RseI CAYNNNNRTG 1 cut(s) 1290
SatI GCNGC 2 cut(s) 495, 936
Sau3AI GATC 8 cut(s) 222, 360, 429, 439, 775, 831, 1254, 1498
Sau96I GGNCC 1 cut(s) 1007
ScaI AGTACT 1 cut(s) 983
SchI GAGTC 2 cut(s) 238, 1154
ScrFI CCNGG 4 cut(s) 327, 862, 1231, 1327
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 5 cut(s) 67, 1290, 1360, 1432, 1454
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 1007
SmiMI CAYNNNNRTG 1 cut(s) 1290
SmlI CTYRAG 3 cut(s) 83, 866, 1162
SmoI CTYRAG 3 cut(s) 83, 866, 1162
SspI AATATT 1 cut(s) 1111
SspMI CTAG 6 cut(s) 132, 552, 657, 956, 1115, 1455
StyD4I CCNGG 4 cut(s) 325, 860, 1229, 1325
StyI CCWWGG 2 cut(s) 955, 1492
TaaI ACNGT 5 cut(s) 739, 760, 986, 1190, 1404
TaqI TCGA 4 cut(s) 9, 560, 1390, 1406
TaqII GACCGA 1 cut(s) 1112
TatI WGTACW 2 cut(s) 287, 981
TfiI GAWTC 5 cut(s) 53, 332, 1310, 1336, 1505
TscAI CASTG 4 cut(s) 421, 504, 763, 1423
TseFI GTSAC 4 cut(s) 463, 568, 697, 1093
TseI GCWGC 2 cut(s) 494, 935
Tsp45I GTSAC 4 cut(s) 463, 568, 697, 1093
TspDTI ATGAA 4 cut(s) 523, 558, 606, 1044
TspGWI ACGGA 1 cut(s) 1464
TspRI CASTG 4 cut(s) 421, 504, 763, 1423
Van91I CCANNNNNTGG 1 cut(s) 321
Vha464I CTTAAG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 1007
VspI ATTAAT 2 cut(s) 204, 876
XagI CCTNNNNNAGG 1 cut(s) 1330
XapI RAATTY 2 cut(s) 814, 1412
XbaI TCTAGA 1 cut(s) 1114
XceI RCATGY 1 cut(s) 1295
XcmI CCANNNNNNNNNTGG 1 cut(s) 997
XmaJI CCTAGG 1 cut(s) 955
XmnI GAANNNNTTC 3 cut(s) 262, 1412, 1560
XspI CTAG 6 cut(s) 132, 552, 657, 956, 1115, 1455
ZrmI AGTACT 1 cut(s) 983
Zsp2I ATGCAT 1 cut(s) 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.